Incidental Mutation 'R4640:Or13g1'
| ID |
351609 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or13g1
|
| Ensembl Gene |
ENSMUSG00000054054 |
| Gene Name |
olfactory receptor family 13 subfamily G member 1 |
| Synonyms |
MOR251-4P, GA_x6K02T2NHDJ-9801340-9802266, Olfr309 |
| MMRRC Submission |
041902-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.058)
|
| Stock # |
R4640 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
85955393-85956319 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 85956274 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Serine
at position 16
(T16S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000134377
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000055690]
[ENSMUST00000174158]
|
| AlphaFold |
Q7TS01 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000055690
AA Change: T16S
PolyPhen 2
Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
|
| SMART Domains |
Protein: ENSMUSP00000061929
Gene: ENSMUSG00000054054
AA Change: T16S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7TM_GPCR_Srsx
|
33 |
303 |
4.5e-11 |
PFAM |
|
Pfam:7tm_1
|
39 |
288 |
1.5e-26 |
PFAM |
|
Pfam:7tm_4
|
137 |
281 |
7.9e-44 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174158
AA Change: T16S
PolyPhen 2
Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
|
| SMART Domains |
Protein: ENSMUSP00000134377
Gene: ENSMUSG00000054054
AA Change: T16S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
305 |
1.6e-55 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
33 |
303 |
4.5e-11 |
PFAM |
|
Pfam:7tm_1
|
39 |
288 |
2.4e-18 |
PFAM |
|
| Meta Mutation Damage Score |
0.1274 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.3%
- 20x: 95.4%
|
| Validation Efficiency |
93% (39/42) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts16 |
G |
A |
13: 70,927,637 (GRCm39) |
|
probably benign |
Het |
| Adgrl4 |
T |
C |
3: 151,205,947 (GRCm39) |
|
probably benign |
Het |
| Ano4 |
C |
T |
10: 88,790,559 (GRCm39) |
A847T |
probably damaging |
Het |
| Atp11a |
A |
G |
8: 12,878,434 (GRCm39) |
|
probably benign |
Het |
| Cct4 |
T |
A |
11: 22,952,297 (GRCm39) |
S463T |
probably benign |
Het |
| Cfap251 |
G |
T |
5: 123,440,495 (GRCm39) |
V1094L |
probably benign |
Het |
| Cnmd |
T |
C |
14: 79,894,093 (GRCm39) |
N98S |
probably damaging |
Het |
| Copz2 |
A |
T |
11: 96,747,533 (GRCm39) |
Q172L |
possibly damaging |
Het |
| Ctdp1 |
C |
A |
18: 80,494,369 (GRCm39) |
|
probably null |
Het |
| Cyfip1 |
C |
T |
7: 55,563,199 (GRCm39) |
T865I |
possibly damaging |
Het |
| Cyp2c37 |
A |
T |
19: 40,000,276 (GRCm39) |
D466V |
possibly damaging |
Het |
| Dytn |
A |
G |
1: 63,682,507 (GRCm39) |
L380P |
possibly damaging |
Het |
| Fam124b |
G |
A |
1: 80,191,243 (GRCm39) |
R47C |
probably damaging |
Het |
| Foxe3 |
G |
A |
4: 114,782,972 (GRCm39) |
A80V |
probably damaging |
Het |
| Gm5884 |
A |
G |
6: 128,622,734 (GRCm39) |
|
noncoding transcript |
Het |
| Kera |
A |
T |
10: 97,448,749 (GRCm39) |
Y323F |
probably damaging |
Het |
| Lipf |
A |
T |
19: 33,946,197 (GRCm39) |
Y205F |
probably damaging |
Het |
| Lipo2 |
T |
C |
19: 33,698,237 (GRCm39) |
E380G |
probably benign |
Het |
| Mcm2 |
A |
T |
6: 88,864,786 (GRCm39) |
H563Q |
possibly damaging |
Het |
| Mindy3 |
T |
C |
2: 12,352,974 (GRCm39) |
E409G |
probably benign |
Het |
| Mns1 |
A |
G |
9: 72,346,564 (GRCm39) |
K16E |
probably benign |
Het |
| Naip5 |
T |
A |
13: 100,356,338 (GRCm39) |
E1092D |
probably benign |
Het |
| Nlrp4g |
T |
C |
9: 124,349,153 (GRCm38) |
|
noncoding transcript |
Het |
| Nrxn1 |
A |
G |
17: 90,868,196 (GRCm39) |
S1105P |
probably damaging |
Het |
| Odf2l |
G |
A |
3: 144,834,706 (GRCm39) |
R186H |
probably damaging |
Het |
| Or2d3c |
T |
C |
7: 106,525,800 (GRCm39) |
I289V |
possibly damaging |
Het |
| Phxr2 |
T |
C |
10: 98,961,931 (GRCm39) |
|
probably benign |
Het |
| Plcxd3 |
T |
C |
15: 4,546,725 (GRCm39) |
F243S |
probably damaging |
Het |
| Ppp1r27 |
T |
C |
11: 120,441,553 (GRCm39) |
N76D |
possibly damaging |
Het |
| Ptprz1 |
A |
G |
6: 22,972,797 (GRCm39) |
T236A |
probably damaging |
Het |
| Pyroxd1 |
C |
G |
6: 142,300,467 (GRCm39) |
S199* |
probably null |
Het |
| R3hdm1 |
T |
C |
1: 128,102,975 (GRCm39) |
|
probably benign |
Het |
| Sall2 |
T |
A |
14: 52,552,616 (GRCm39) |
Q193L |
probably damaging |
Het |
| Srpk1 |
T |
C |
17: 28,827,698 (GRCm39) |
S39G |
probably benign |
Het |
| Tcaf3 |
A |
G |
6: 42,564,513 (GRCm39) |
V883A |
probably damaging |
Het |
| Tmem104 |
T |
A |
11: 115,134,550 (GRCm39) |
V362E |
probably damaging |
Het |
|
| Other mutations in Or13g1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00886:Or13g1
|
APN |
7 |
85,956,259 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0370:Or13g1
|
UTSW |
7 |
85,956,057 (GRCm39) |
missense |
probably benign |
0.42 |
|
R1869:Or13g1
|
UTSW |
7 |
85,955,875 (GRCm39) |
missense |
possibly damaging |
0.96 |
|
R2047:Or13g1
|
UTSW |
7 |
85,956,012 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3939:Or13g1
|
UTSW |
7 |
85,955,437 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4562:Or13g1
|
UTSW |
7 |
85,956,360 (GRCm39) |
start gained |
probably benign |
|
|
R4811:Or13g1
|
UTSW |
7 |
85,956,166 (GRCm39) |
missense |
probably benign |
0.41 |
|
R4867:Or13g1
|
UTSW |
7 |
85,955,491 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4954:Or13g1
|
UTSW |
7 |
85,955,809 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5784:Or13g1
|
UTSW |
7 |
85,955,743 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6043:Or13g1
|
UTSW |
7 |
85,955,547 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6498:Or13g1
|
UTSW |
7 |
85,956,226 (GRCm39) |
missense |
probably benign |
|
|
R6849:Or13g1
|
UTSW |
7 |
85,956,248 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R7238:Or13g1
|
UTSW |
7 |
85,955,799 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7811:Or13g1
|
UTSW |
7 |
85,955,554 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7917:Or13g1
|
UTSW |
7 |
85,955,686 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8010:Or13g1
|
UTSW |
7 |
85,956,260 (GRCm39) |
missense |
probably benign |
0.24 |
|
R8271:Or13g1
|
UTSW |
7 |
85,955,962 (GRCm39) |
missense |
probably benign |
0.13 |
|
R9017:Or13g1
|
UTSW |
7 |
85,955,957 (GRCm39) |
nonsense |
probably null |
|
|
R9150:Or13g1
|
UTSW |
7 |
85,955,942 (GRCm39) |
missense |
probably damaging |
0.96 |
|
T0975:Or13g1
|
UTSW |
7 |
85,955,492 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AAGAGCTGGGACATGCAACC -3'
(R):5'- TGGAAATCAGTATCCCATCATAGAG -3'
Sequencing Primer
(F):5'- TGGGACATGCAACCCCCATATG -3'
(R):5'- TCCCATCATAGAGAAACTTATGCTAC -3'
|
| Posted On |
2015-10-08 |
Incidental Mutation