Incidental Mutation 'IGL03122:Cry2'
ID410003
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Cry2
Ensembl Gene ENSMUSG00000068742
Gene Namecryptochrome 2 (photolyase-like)
Synonyms
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.855) question?
Stock #IGL03122
Quality Score
Status
Chromosome2
Chromosomal Location92403646-92434043 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 92413295 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Cysteine at position 439 (R439C)
Ref Sequence ENSEMBL: ENSMUSP00000106909 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000090559] [ENSMUST00000111278]
Predicted Effect probably damaging
Transcript: ENSMUST00000090559
AA Change: R439C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000088047
Gene: ENSMUSG00000068742
AA Change: R439C

DomainStartEndE-ValueType
low complexity region 2 13 N/A INTRINSIC
Pfam:DNA_photolyase 23 187 2.4e-50 PFAM
Pfam:FAD_binding_7 231 504 4.4e-89 PFAM
low complexity region 562 573 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000111278
AA Change: R439C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000106909
Gene: ENSMUSG00000068742
AA Change: R439C

DomainStartEndE-ValueType
low complexity region 2 13 N/A INTRINSIC
Pfam:DNA_photolyase 23 189 3.6e-50 PFAM
Pfam:FAD_binding_7 230 506 1.4e-105 PFAM
low complexity region 562 573 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126002
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: This gene encodes a flavin adenine dinucleotide-binding protein that is a key component of the circadian core oscillator complex, which regulates the circadian clock. This gene is upregulated by Clock/Arntl heterodimers but then represses this upregulation in a feedback loop using Per/Cry heterodimers to interact with Clock/Arntl. Polymorphisms in this gene have been associated with altered sleep patterns. The encoded protein is widely conserved across plants and animals. [provided by RefSeq, Feb 2014]
PHENOTYPE: Homozygotes for targeted null mutations exhibit a one-hour longer circadian period under constant darkness, and reduced expression of another circadian gene in the suprachiasmatic nucleus in response to acute light exposure. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 35 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
5430419D17Rik A G 7: 131,196,514 Q84R possibly damaging Het
Adgrg7 G A 16: 56,770,362 probably benign Het
Afap1l1 T C 18: 61,733,831 D719G probably benign Het
Amph C T 13: 19,102,943 T274M probably damaging Het
Atp2c2 T A 8: 119,742,675 D396E possibly damaging Het
Atpaf1 T C 4: 115,791,278 I164T probably damaging Het
Avpr1b C A 1: 131,600,519 P260Q probably damaging Het
Cacna1a T C 8: 84,462,676 probably benign Het
Cald1 A G 6: 34,765,028 I449V probably damaging Het
Ccdc24 A G 4: 117,871,745 probably null Het
Cenpk C A 13: 104,242,377 Q134K probably damaging Het
Clasp1 A G 1: 118,510,277 N373D probably damaging Het
Col7a1 T A 9: 108,961,683 S1042T unknown Het
Dip2a G T 10: 76,275,046 D1138E probably benign Het
Dlgap3 T C 4: 127,195,225 S205P possibly damaging Het
Echdc2 T A 4: 108,165,580 S18T probably benign Het
Efcab2 T A 1: 178,437,477 V36E probably damaging Het
Galk1 A T 11: 116,010,239 probably null Het
Hoxc11 A T 15: 102,954,955 N144Y probably damaging Het
Ift140 T A 17: 25,086,910 C824S probably damaging Het
Inf2 A G 12: 112,604,229 S401G probably benign Het
Kcnn1 T G 8: 70,855,080 D106A probably damaging Het
Lama4 A G 10: 39,067,963 N754S probably benign Het
March6 A G 15: 31,478,293 probably null Het
Nlrp1b A C 11: 71,181,833 C395G probably benign Het
Olfr136 T C 17: 38,335,301 V48A probably benign Het
Olfr1500 A G 19: 13,827,650 S249P possibly damaging Het
Olfr194 T C 16: 59,119,438 M211V probably benign Het
Olfr730 A T 14: 50,187,004 M71K probably damaging Het
Scel A G 14: 103,599,406 R477G possibly damaging Het
Sdk2 A G 11: 113,842,068 S984P probably damaging Het
Slc4a7 C T 14: 14,782,040 probably benign Het
Tas2r103 A G 6: 133,036,909 S65P probably damaging Het
Tnip2 T C 5: 34,503,751 E119G possibly damaging Het
Zgrf1 T A 3: 127,588,133 L310M possibly damaging Het
Other mutations in Cry2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01995:Cry2 APN 2 92424632 missense probably benign 0.15
IGL02167:Cry2 APN 2 92433821 missense possibly damaging 0.93
IGL02183:Cry2 APN 2 92413039 missense probably damaging 0.99
IGL02343:Cry2 APN 2 92426921 missense possibly damaging 0.90
IGL02432:Cry2 APN 2 92413667 missense probably damaging 0.99
IGL02725:Cry2 APN 2 92413260 splice site probably benign
IGL02932:Cry2 APN 2 92413117 nonsense probably null
IGL03366:Cry2 APN 2 92413715 missense probably damaging 1.00
R0679:Cry2 UTSW 2 92413715 missense probably damaging 1.00
R1325:Cry2 UTSW 2 92413770 missense probably damaging 1.00
R1862:Cry2 UTSW 2 92424566 missense probably damaging 1.00
R1891:Cry2 UTSW 2 92413640 missense possibly damaging 0.93
R2189:Cry2 UTSW 2 92411692 missense possibly damaging 0.84
R4032:Cry2 UTSW 2 92413827 missense probably benign 0.00
R4689:Cry2 UTSW 2 92424554 missense probably benign 0.38
R5130:Cry2 UTSW 2 92424599 missense probably benign 0.28
R5145:Cry2 UTSW 2 92413060 missense probably benign
R5970:Cry2 UTSW 2 92412967 missense probably benign 0.08
R6179:Cry2 UTSW 2 92413842 missense probably damaging 0.98
R7102:Cry2 UTSW 2 92413093 missense probably damaging 0.99
R7158:Cry2 UTSW 2 92413715 missense probably damaging 1.00
R7213:Cry2 UTSW 2 92413659 missense probably benign 0.00
R7257:Cry2 UTSW 2 92412981 missense possibly damaging 0.67
R7378:Cry2 UTSW 2 92413664 missense probably damaging 1.00
R7427:Cry2 UTSW 2 92413047 missense possibly damaging 0.74
R7428:Cry2 UTSW 2 92413047 missense possibly damaging 0.74
R7440:Cry2 UTSW 2 92413638 missense probably damaging 1.00
R7531:Cry2 UTSW 2 92413005 missense probably damaging 0.98
Posted On2016-08-02