Mutagenetix > Incidental Mutation

Incidental Mutation 'R5328:Itk'

422158

Institutional Source

Beutler Lab

Gene Symbol

Itk

Ensembl Gene

ENSMUSG00000020395

Gene Name

IL2 inducible T cell kinase

Synonyms

Tcsk, Tsk, Emt

MMRRC Submission

042843-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.116) question?

Stock #

R5328 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

46215977-46280342 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 46222703 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 583 (S583P)

Ref Sequence

ENSEMBL: ENSMUSP00000020664 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020664] [ENSMUST00000109237]

AlphaFold

Q03526

Predicted Effect

probably benign
Transcript: ENSMUST00000020664
AA Change: S583P

PolyPhen 2 Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000020664
Gene: ENSMUSG00000020395
AA Change: S583P

Domain	Start	End	E-Value	Type
PH	5	113	2.3e-13	SMART
BTK	113	149	1.1e-21	SMART
SH3	174	230	5.87e-14	SMART
SH2	237	328	9.44e-29	SMART
TyrKc	362	611	3.28e-133	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000109237
AA Change: S589P

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000104860
Gene: ENSMUSG00000020395
AA Change: S589P

Domain	Start	End	E-Value	Type
PH	5	119	3.94e-12	SMART
BTK	119	155	1.1e-21	SMART
SH3	180	236	5.87e-14	SMART
SH2	243	334	9.44e-29	SMART
TyrKc	368	617	3.28e-133	SMART

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an intracellular tyrosine kinase expressed in T-cells. The protein contains both SH2 and SH3 domains which are often found in intracellular kinases. It is thought to play a role in T-cell proliferation and differentiation. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruptions in this gene display decreased percentages of CD4 and CD8 cells, increased percentage of B cells, impaired T cell receptor signaling, and increased susceptibility to Toxoplasma gondii infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1b	T	A	5: 8,887,694 (GRCm39)	V860E	possibly damaging	Het
Abcc6	T	C	7: 45,641,735 (GRCm39)	D881G	probably benign	Het
Abcc9	A	G	6: 142,627,785 (GRCm39)	V415A	probably benign	Het
Adgrb3	A	C	1: 25,133,356 (GRCm39)	N1003K	possibly damaging	Het
Adora3	C	T	3: 105,814,619 (GRCm39)	T123I	probably benign	Het
Amotl2	A	C	9: 102,600,967 (GRCm39)	T345P	probably benign	Het
Arap3	C	T	18: 38,124,740 (GRCm39)	E247K	possibly damaging	Het
Atp8b1	A	T	18: 64,664,462 (GRCm39)	D1235E	probably benign	Het
Axl	A	T	7: 25,472,836 (GRCm39)	V400E	probably damaging	Het
Brd8	T	A	18: 34,741,034 (GRCm39)	N431Y	probably benign	Het
Cadps	A	T	14: 12,457,790 (GRCm38)	N1025K	probably benign	Het
Cblc	A	T	7: 19,526,505 (GRCm39)	S195T	possibly damaging	Het
Chd2	C	T	7: 73,113,429 (GRCm39)	A1184T	possibly damaging	Het
Chst10	G	A	1: 38,935,043 (GRCm39)		probably benign	Het
Col12a1	T	C	9: 79,527,342 (GRCm39)	K2663E	probably damaging	Het
Cspg4	A	T	9: 56,793,140 (GRCm39)	I292L	probably benign	Het
Cul1	T	C	6: 47,485,251 (GRCm39)	V294A	probably damaging	Het
Cyp2d11	G	A	15: 82,275,972 (GRCm39)	P203L	probably benign	Het
Dnaaf10	C	A	11: 17,172,220 (GRCm39)	P103Q	probably damaging	Het
Dscam	T	C	16: 96,474,878 (GRCm39)	H1228R	probably benign	Het
Eif3l	A	T	15: 78,977,561 (GRCm39)	K534*	probably null	Het
Enpep	T	C	3: 129,074,159 (GRCm39)	E796G	probably benign	Het
Ext1	C	A	15: 52,939,213 (GRCm39)	W612L	probably damaging	Het
Faap100	T	A	11: 120,268,458 (GRCm39)	E105V	possibly damaging	Het
Fam117a	T	A	11: 95,254,996 (GRCm39)		probably null	Het
Fan1	A	T	7: 64,004,217 (GRCm39)	Y750N	probably damaging	Het
Fat4	T	A	3: 39,011,017 (GRCm39)	I2039N	probably damaging	Het
Gabrr2	G	T	4: 33,082,565 (GRCm39)	D106Y	probably damaging	Het
Gak	A	C	5: 108,764,867 (GRCm39)	C145G	possibly damaging	Het
Galnt14	A	T	17: 73,812,454 (GRCm39)	N406K	possibly damaging	Het
Gm10439	T	G	X: 148,419,159 (GRCm39)	*434E	probably null	Het
Gm10837	G	T	14: 122,728,190 (GRCm39)	R22L	unknown	Het
Gm19965	T	A	1: 116,749,148 (GRCm39)	H276Q	possibly damaging	Het
Gm43517	T	C	12: 49,437,939 (GRCm39)		probably benign	Het
Greb1l	A	T	18: 10,553,720 (GRCm39)	I1574F	probably damaging	Het
Gzme	G	A	14: 56,355,224 (GRCm39)	H236Y	probably benign	Het
Heatr5b	G	A	17: 79,133,791 (GRCm39)	T266I	possibly damaging	Het
Hk3	T	C	13: 55,161,306 (GRCm39)	I185V	probably benign	Het
Hnrnpr	A	G	4: 136,066,527 (GRCm39)	E302G	probably benign	Het
Itgal	T	C	7: 126,910,847 (GRCm39)		probably null	Het
Loxhd1	A	T	18: 77,498,268 (GRCm39)	I1448F	probably damaging	Het
Macf1	GCCCCC	GCCCCCC	4: 123,244,784 (GRCm39)		probably null	Het
Man2a2	A	T	7: 80,018,504 (GRCm39)	F118L	probably benign	Het
Mfsd5	T	A	15: 102,189,447 (GRCm39)	V273E	probably damaging	Het
Nfe2l2	A	G	2: 75,507,200 (GRCm39)	L300P	probably damaging	Het
Nt5c1a	T	G	4: 123,102,786 (GRCm39)	L122R	possibly damaging	Het
Nt5c3b	A	G	11: 100,331,067 (GRCm39)	F42S	probably damaging	Het
Or2av9	C	A	11: 58,381,255 (GRCm39)	A109S	possibly damaging	Het
Or51g2	T	A	7: 102,623,175 (GRCm39)	N8I	possibly damaging	Het
Pabpc1	A	T	15: 36,603,121 (GRCm39)	D204E	probably benign	Het
Panx2	A	G	15: 88,952,298 (GRCm39)	N255S	probably damaging	Het
Pcnt	A	G	10: 76,247,553 (GRCm39)	L993P	probably damaging	Het
Pfas	A	T	11: 68,879,418 (GRCm39)	C1160S	probably damaging	Het
Plekhh3	T	A	11: 101,058,484 (GRCm39)		probably benign	Het
Plod3	T	A	5: 137,018,537 (GRCm39)	N258K	probably damaging	Het
Prr14l	T	C	5: 32,987,365 (GRCm39)	Q710R	probably benign	Het
Rnf216	G	T	5: 143,078,754 (GRCm39)	T65K	possibly damaging	Het
Samd9l	T	C	6: 3,376,739 (GRCm39)	E174G	probably damaging	Het
Septin12	T	A	16: 4,811,857 (GRCm39)	M63L	possibly damaging	Het
Sh3bgrl2	T	A	9: 83,459,509 (GRCm39)	D22E	probably benign	Het
Sirpd	T	C	3: 15,397,234 (GRCm39)	M17V	unknown	Het
Skil	A	G	3: 31,171,718 (GRCm39)	K488R	probably benign	Het
Slamf6	T	A	1: 171,765,662 (GRCm39)	I262K	probably benign	Het
Slc27a3	T	C	3: 90,294,139 (GRCm39)	D470G	probably damaging	Het
Sorbs3	A	T	14: 70,418,623 (GRCm39)	V680E	probably damaging	Het
Sox9	C	T	11: 112,673,484 (GRCm39)	T25I	probably benign	Het
Srsf1	G	T	11: 87,940,819 (GRCm39)		probably benign	Het
Stard9	A	C	2: 120,529,711 (GRCm39)	E1989D	probably damaging	Het
Thumpd2	T	A	17: 81,351,591 (GRCm39)	I277F	possibly damaging	Het
Tinag	C	A	9: 76,912,913 (GRCm39)	G299*	probably null	Het
Tk2	A	T	8: 104,955,931 (GRCm39)		probably null	Het
Tmem44	A	G	16: 30,359,709 (GRCm39)	S210P	possibly damaging	Het
Traf3ip1	C	A	1: 91,447,791 (GRCm39)	P423T	probably damaging	Het
Trmt12	A	G	15: 58,744,704 (GRCm39)	D34G	probably damaging	Het
Ttc39b	A	G	4: 83,180,178 (GRCm39)	Y72H	probably damaging	Het
Ttn	G	A	2: 76,708,755 (GRCm39)		probably benign	Het
Ttyh2	T	A	11: 114,600,894 (GRCm39)	I381N	possibly damaging	Het
Uaca	A	T	9: 60,777,814 (GRCm39)	N734Y	probably benign	Het
Usp34	T	C	11: 23,414,616 (GRCm39)	I2853T	probably benign	Het
Usp34	G	A	11: 23,438,659 (GRCm39)	G3407D	probably benign	Het
Vmn2r78	A	G	7: 86,570,238 (GRCm39)	Y252C	probably damaging	Het
Wdr19	G	A	5: 65,401,522 (GRCm39)	C979Y	probably damaging	Het
Yeats2	A	T	16: 19,989,955 (GRCm39)	H277L	probably damaging	Het
Zbtb2	T	C	10: 4,319,267 (GRCm39)	Y253C	possibly damaging	Het
Zfat	C	A	15: 68,051,677 (GRCm39)	G706C	probably damaging	Het
Zfp106	A	T	2: 120,350,898 (GRCm39)	N1584K	possibly damaging	Het

Other mutations in Itk

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00950:Itk	APN	11	46,258,723 (GRCm39)	missense	probably damaging	1.00
IGL01349:Itk	APN	11	46,232,027 (GRCm39)	missense	possibly damaging	0.84
IGL03290:Itk	APN	11	46,225,764 (GRCm39)	missense	probably damaging	1.00
IGL03385:Itk	APN	11	46,222,688 (GRCm39)	nonsense	probably null
Calame	UTSW	11	46,233,222 (GRCm39)	splice site	probably null
carbone	UTSW	11	46,222,776 (GRCm39)	nonsense	probably null
demon	UTSW	11	46,231,539 (GRCm39)	missense	probably damaging	1.00
goodnow	UTSW	11	46,228,926 (GRCm39)	splice site	probably null
itxaro	UTSW	11	46,229,044 (GRCm39)	missense	probably damaging	1.00
Segun	UTSW	11	46,235,710 (GRCm39)	intron	probably benign
BB009:Itk	UTSW	11	46,231,519 (GRCm39)	missense	probably benign
BB019:Itk	UTSW	11	46,231,519 (GRCm39)	missense	probably benign
R0095:Itk	UTSW	11	46,233,279 (GRCm39)	missense	probably damaging	0.99
R0265:Itk	UTSW	11	46,280,285 (GRCm39)	start gained	probably benign
R0281:Itk	UTSW	11	46,244,743 (GRCm39)	missense	probably damaging	1.00
R0463:Itk	UTSW	11	46,222,816 (GRCm39)	missense	probably damaging	1.00
R0518:Itk	UTSW	11	46,251,115 (GRCm39)	missense	probably damaging	0.98
R0521:Itk	UTSW	11	46,251,115 (GRCm39)	missense	probably damaging	0.98
R1121:Itk	UTSW	11	46,222,721 (GRCm39)	missense	possibly damaging	0.93
R1550:Itk	UTSW	11	46,280,153 (GRCm39)	missense	probably damaging	1.00
R1762:Itk	UTSW	11	46,227,309 (GRCm39)	missense	probably damaging	0.98
R2418:Itk	UTSW	11	46,229,044 (GRCm39)	missense	probably damaging	1.00
R2419:Itk	UTSW	11	46,229,044 (GRCm39)	missense	probably damaging	1.00
R2859:Itk	UTSW	11	46,235,662 (GRCm39)	intron	probably benign
R3107:Itk	UTSW	11	46,218,291 (GRCm39)	missense	probably benign	0.15
R3546:Itk	UTSW	11	46,246,675 (GRCm39)	missense	probably benign	0.00
R4601:Itk	UTSW	11	46,227,342 (GRCm39)	missense	probably benign	0.17
R4610:Itk	UTSW	11	46,227,342 (GRCm39)	missense	probably benign	0.17
R4792:Itk	UTSW	11	46,235,658 (GRCm39)	intron	probably benign
R4885:Itk	UTSW	11	46,227,171 (GRCm39)	splice site	probably null
R4934:Itk	UTSW	11	46,280,152 (GRCm39)	missense	probably damaging	1.00
R5286:Itk	UTSW	11	46,228,926 (GRCm39)	splice site	probably null
R5399:Itk	UTSW	11	46,228,938 (GRCm39)	missense	probably benign	0.44
R5958:Itk	UTSW	11	46,235,682 (GRCm39)	intron	probably benign
R6235:Itk	UTSW	11	46,227,255 (GRCm39)	missense	probably benign	0.16
R6828:Itk	UTSW	11	46,232,045 (GRCm39)	missense	probably damaging	1.00
R6849:Itk	UTSW	11	46,222,762 (GRCm39)	missense	probably damaging	1.00
R7356:Itk	UTSW	11	46,258,659 (GRCm39)	missense	possibly damaging	0.72
R7753:Itk	UTSW	11	46,222,722 (GRCm39)	missense	probably damaging	1.00
R7932:Itk	UTSW	11	46,231,519 (GRCm39)	missense	probably benign
R7988:Itk	UTSW	11	46,246,661 (GRCm39)	missense	probably damaging	0.99
R8188:Itk	UTSW	11	46,222,776 (GRCm39)	nonsense	probably null
R8337:Itk	UTSW	11	46,233,222 (GRCm39)	splice site	probably null
R8738:Itk	UTSW	11	46,231,539 (GRCm39)	missense	probably damaging	1.00
R8993:Itk	UTSW	11	46,225,735 (GRCm39)	missense	probably damaging	1.00
R9028:Itk	UTSW	11	46,235,710 (GRCm39)	intron	probably benign
R9650:Itk	UTSW	11	46,222,778 (GRCm39)	missense	probably damaging	1.00
U24488:Itk	UTSW	11	46,228,971 (GRCm39)	missense	probably damaging	1.00
X0062:Itk	UTSW	11	46,256,871 (GRCm39)	missense	probably benign	0.15
Z1088:Itk	UTSW	11	46,244,689 (GRCm39)	splice site	probably null

Predicted Primers

PCR Primer
(F):5'- AACACGGACAAAGTCTGGC -3'
(R):5'- GGTGGACTTAATACTCACTACAAGG -3'

Sequencing Primer
(F):5'- GACAAAGTCTGGCCTGTTTATTACG -3'
(R):5'- TAATACTCACTACAAGGCCCTGTTG -3'

Posted On

2016-08-04