Incidental Mutation 'R1070:Or5p57'
| ID |
86167 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or5p57
|
| Ensembl Gene |
ENSMUSG00000063120 |
| Gene Name |
olfactory receptor family 5 subfamily P member 57 |
| Synonyms |
MOR204-32, GA_x6K02T2PBJ9-10395807-10394869, Olfr480 |
| MMRRC Submission |
039156-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.217)
|
| Stock # |
R1070 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
107664975-107666002 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 107665858 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 49
(D49G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000071583
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000071658]
[ENSMUST00000217653]
|
| AlphaFold |
Q8VEZ0 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000071658
AA Change: D49G
PolyPhen 2
Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
|
| SMART Domains |
Protein: ENSMUSP00000071583
Gene: ENSMUSG00000063120
AA Change: D49G
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
61 |
338 |
1.7e-50 |
PFAM |
|
Pfam:7tm_1
|
71 |
320 |
1.4e-20 |
PFAM |
|
| Predicted Effect |
|
| SMART Domains |
Protein: ENSMUSP00000081815
Gene: ENSMUSG00000063120
AA Change: D19G
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
308 |
5.6e-49 |
PFAM |
|
Pfam:7tm_1
|
41 |
290 |
8.1e-19 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000217653
AA Change: D19G
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.9%
- 10x: 97.6%
- 20x: 95.7%
|
| Validation Efficiency |
95% (41/43) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2ml1 |
T |
C |
6: 128,520,263 (GRCm39) |
D1367G |
probably damaging |
Het |
| Actr3b |
A |
G |
5: 26,053,491 (GRCm39) |
|
probably benign |
Het |
| Agtr1b |
A |
T |
3: 20,369,912 (GRCm39) |
N231K |
probably benign |
Het |
| Bach1 |
T |
C |
16: 87,517,009 (GRCm39) |
S517P |
probably benign |
Het |
| Blzf1 |
A |
G |
1: 164,131,499 (GRCm39) |
|
probably benign |
Het |
| Bptf |
G |
T |
11: 106,945,881 (GRCm39) |
Q2453K |
possibly damaging |
Het |
| Gtf3c3 |
C |
T |
1: 54,456,937 (GRCm39) |
A488T |
probably damaging |
Het |
| Heatr4 |
T |
C |
12: 84,024,841 (GRCm39) |
T327A |
possibly damaging |
Het |
| Hes1 |
T |
C |
16: 29,886,101 (GRCm39) |
I235T |
probably damaging |
Het |
| Hmcn1 |
T |
A |
1: 150,565,341 (GRCm39) |
D2262V |
probably damaging |
Het |
| Ifi208 |
C |
T |
1: 173,510,610 (GRCm39) |
A255V |
probably damaging |
Het |
| Inhbe |
T |
C |
10: 127,187,382 (GRCm39) |
I11M |
probably benign |
Het |
| Ipo9 |
T |
C |
1: 135,334,281 (GRCm39) |
E315G |
possibly damaging |
Het |
| Itih1 |
G |
T |
14: 30,664,413 (GRCm39) |
|
probably benign |
Het |
| Kcnk2 |
A |
G |
1: 188,988,960 (GRCm39) |
|
probably benign |
Het |
| Kdm4c |
T |
A |
4: 74,291,865 (GRCm39) |
Y827* |
probably null |
Het |
| Kif5a |
T |
C |
10: 127,081,275 (GRCm39) |
T220A |
probably benign |
Het |
| Krt78 |
A |
G |
15: 101,854,728 (GRCm39) |
Y1028H |
possibly damaging |
Het |
| Ldc1 |
T |
C |
4: 130,112,949 (GRCm39) |
E149G |
probably benign |
Het |
| Mylk4 |
T |
C |
13: 32,908,801 (GRCm39) |
D333G |
probably benign |
Het |
| Net1 |
A |
T |
13: 3,962,930 (GRCm39) |
S45T |
probably benign |
Het |
| Npat |
T |
A |
9: 53,483,892 (GRCm39) |
F1403I |
probably damaging |
Het |
| Or5h25 |
A |
G |
16: 58,930,182 (GRCm39) |
S264P |
probably benign |
Het |
| Or7a35 |
C |
T |
10: 78,853,684 (GRCm39) |
P176L |
probably damaging |
Het |
| Pcif1 |
T |
C |
2: 164,731,058 (GRCm39) |
Y404H |
probably benign |
Het |
| Pdzd2 |
A |
G |
15: 12,390,052 (GRCm39) |
|
probably null |
Het |
| Rab3a |
A |
G |
8: 71,209,840 (GRCm39) |
N40S |
probably damaging |
Het |
| Raf1 |
T |
C |
6: 115,614,660 (GRCm39) |
N74D |
probably benign |
Het |
| Rap1gap2 |
A |
G |
11: 74,327,853 (GRCm39) |
V139A |
possibly damaging |
Het |
| Rdh12 |
T |
C |
12: 79,260,522 (GRCm39) |
L206P |
probably damaging |
Het |
| Rimoc1 |
C |
A |
15: 4,015,848 (GRCm39) |
V239F |
probably benign |
Het |
| Sdhb |
T |
C |
4: 140,698,547 (GRCm39) |
|
probably benign |
Het |
| Sned1 |
G |
A |
1: 93,209,376 (GRCm39) |
V830M |
possibly damaging |
Het |
| Strip1 |
T |
C |
3: 107,534,724 (GRCm39) |
E102G |
possibly damaging |
Het |
| Sult2a8 |
T |
A |
7: 14,147,698 (GRCm39) |
I198F |
probably damaging |
Het |
| Tars3 |
T |
C |
7: 65,305,444 (GRCm39) |
S223P |
probably damaging |
Het |
| Ugt2b38 |
T |
G |
5: 87,560,232 (GRCm39) |
N361H |
probably damaging |
Het |
| Vcam1 |
C |
T |
3: 115,904,552 (GRCm39) |
V732M |
possibly damaging |
Het |
| Vmn2r79 |
T |
C |
7: 86,652,681 (GRCm39) |
Y458H |
probably damaging |
Het |
|
| Other mutations in Or5p57 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00326:Or5p57
|
APN |
7 |
107,665,495 (GRCm39) |
missense |
probably benign |
0.32 |
|
IGL02060:Or5p57
|
APN |
7 |
107,665,878 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02392:Or5p57
|
APN |
7 |
107,665,710 (GRCm39) |
missense |
probably benign |
0.10 |
|
IGL02493:Or5p57
|
APN |
7 |
107,665,012 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
IGL02634:Or5p57
|
APN |
7 |
107,665,978 (GRCm39) |
missense |
probably benign |
0.00 |
|
F5770:Or5p57
|
UTSW |
7 |
107,665,885 (GRCm39) |
missense |
probably benign |
0.11 |
|
R0446:Or5p57
|
UTSW |
7 |
107,665,932 (GRCm39) |
nonsense |
probably null |
|
|
R1510:Or5p57
|
UTSW |
7 |
107,665,735 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1862:Or5p57
|
UTSW |
7 |
107,665,932 (GRCm39) |
nonsense |
probably null |
|
|
R1863:Or5p57
|
UTSW |
7 |
107,665,932 (GRCm39) |
nonsense |
probably null |
|
|
R1885:Or5p57
|
UTSW |
7 |
107,665,985 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1886:Or5p57
|
UTSW |
7 |
107,665,985 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1887:Or5p57
|
UTSW |
7 |
107,665,985 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3609:Or5p57
|
UTSW |
7 |
107,665,576 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3921:Or5p57
|
UTSW |
7 |
107,665,108 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R4259:Or5p57
|
UTSW |
7 |
107,665,100 (GRCm39) |
nonsense |
probably null |
|
|
R5276:Or5p57
|
UTSW |
7 |
107,665,423 (GRCm39) |
nonsense |
probably null |
|
|
R6224:Or5p57
|
UTSW |
7 |
107,665,949 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8059:Or5p57
|
UTSW |
7 |
107,665,223 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8229:Or5p57
|
UTSW |
7 |
107,665,794 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8271:Or5p57
|
UTSW |
7 |
107,664,980 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8926:Or5p57
|
UTSW |
7 |
107,665,513 (GRCm39) |
missense |
probably benign |
0.06 |
|
R9176:Or5p57
|
UTSW |
7 |
107,665,246 (GRCm39) |
missense |
probably benign |
0.05 |
|
V7581:Or5p57
|
UTSW |
7 |
107,665,885 (GRCm39) |
missense |
probably benign |
0.11 |
|
X0021:Or5p57
|
UTSW |
7 |
107,665,795 (GRCm39) |
missense |
probably benign |
0.01 |
|
X0066:Or5p57
|
UTSW |
7 |
107,665,642 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1088:Or5p57
|
UTSW |
7 |
107,665,534 (GRCm39) |
missense |
probably damaging |
0.99 |
|
| Predicted Primers |
PCR Primer
(F):5'- AATGTTCCCTTTCTGAGAAAGCCCC -3'
(R):5'- ACTCCACAAGTTGTCAGTCATAAAGCC -3'
Sequencing Primer
(F):5'- CCTCAGCATGATGGGTGTAAC -3'
(R):5'- GTTGTCAGTCATAAAGCCAAAGAC -3'
|
| Posted On |
2013-11-18 |
Incidental Mutation