Incidental Mutation 'IGL02249:Tm9sf2'
ID |
286300 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Tm9sf2
|
Ensembl Gene |
ENSMUSG00000025544 |
Gene Name |
transmembrane 9 superfamily member 2 |
Synonyms |
1500001N15Rik, P76, D14Ertd64e |
Accession Numbers |
|
Essential gene? |
Probably essential
(E-score: 0.881)
|
Stock # |
IGL02249
|
Quality Score |
|
Status
|
|
Chromosome |
14 |
Chromosomal Location |
122344450-122397016 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to T
at 122361162 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Serine to Leucine
at position 68
(S68L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000026624
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000026624]
[ENSMUST00000170007]
[ENSMUST00000171318]
|
AlphaFold |
P58021 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000026624
AA Change: S68L
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000026624 Gene: ENSMUSG00000025544 AA Change: S68L
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
35 |
N/A |
INTRINSIC |
Pfam:EMP70
|
74 |
619 |
4.5e-209 |
PFAM |
transmembrane domain
|
630 |
652 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000166043
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000168178
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000170007
|
SMART Domains |
Protein: ENSMUSP00000128894 Gene: ENSMUSG00000025544
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
35 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000171318
AA Change: S68L
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000131227 Gene: ENSMUSG00000025544 AA Change: S68L
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
35 |
N/A |
INTRINSIC |
Pfam:EMP70
|
73 |
112 |
5.9e-9 |
PFAM |
Pfam:EMP70
|
109 |
455 |
1e-172 |
PFAM |
transmembrane domain
|
465 |
487 |
N/A |
INTRINSIC |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the transmembrane 9 superfamily. The encoded 76 kDa protein localizes to early endosomes in human cells. The encoded protein possesses a conserved and highly hydrophobic C-terminal domain which contains nine transmembrane domains. The protein may play a role in small molecule transport or act as an ion channel. A pseudogene associated with this gene is located on the X chromosome. [provided by RefSeq, Oct 2012]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 36 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1700019A02Rik |
T |
A |
1: 53,224,431 (GRCm39) |
K23* |
probably null |
Het |
Abca1 |
A |
T |
4: 53,068,739 (GRCm39) |
L1333* |
probably null |
Het |
Adcy6 |
C |
A |
15: 98,497,795 (GRCm39) |
M452I |
probably damaging |
Het |
Adsl |
G |
A |
15: 80,844,676 (GRCm39) |
R173H |
probably benign |
Het |
Ank3 |
A |
G |
10: 69,718,200 (GRCm39) |
T484A |
probably damaging |
Het |
Apol10a |
A |
G |
15: 77,372,709 (GRCm39) |
D115G |
probably damaging |
Het |
Bard1 |
A |
G |
1: 71,092,828 (GRCm39) |
S529P |
probably damaging |
Het |
C2 |
A |
G |
17: 35,083,484 (GRCm39) |
|
probably benign |
Het |
Cftr |
T |
A |
6: 18,277,870 (GRCm39) |
I956N |
possibly damaging |
Het |
Cwc15 |
A |
G |
9: 14,414,977 (GRCm39) |
T110A |
probably benign |
Het |
Dsg4 |
A |
T |
18: 20,594,361 (GRCm39) |
I497F |
possibly damaging |
Het |
Gadd45b |
A |
G |
10: 80,766,967 (GRCm39) |
D69G |
possibly damaging |
Het |
Glb1l3 |
A |
T |
9: 26,742,564 (GRCm39) |
S307R |
possibly damaging |
Het |
Greb1l |
G |
A |
18: 10,532,961 (GRCm39) |
G843R |
probably damaging |
Het |
H2-M11 |
A |
T |
17: 36,858,829 (GRCm39) |
Y123F |
probably benign |
Het |
Hal |
G |
A |
10: 93,333,400 (GRCm39) |
A323T |
probably damaging |
Het |
Il4ra |
T |
C |
7: 125,166,396 (GRCm39) |
F47L |
probably benign |
Het |
Klra10 |
T |
A |
6: 130,256,367 (GRCm39) |
N96Y |
probably benign |
Het |
Maco1 |
T |
C |
4: 134,555,623 (GRCm39) |
I283M |
possibly damaging |
Het |
Mki67 |
T |
A |
7: 135,302,251 (GRCm39) |
M928L |
possibly damaging |
Het |
Myh15 |
T |
A |
16: 48,930,847 (GRCm39) |
V607D |
probably damaging |
Het |
Ndufaf2 |
A |
G |
13: 108,217,925 (GRCm39) |
W74R |
probably damaging |
Het |
Noc4l |
C |
A |
5: 110,801,081 (GRCm39) |
|
probably benign |
Het |
Or51b6b |
T |
A |
7: 103,309,573 (GRCm39) |
I295F |
probably damaging |
Het |
Papss1 |
T |
A |
3: 131,307,772 (GRCm39) |
W274R |
probably damaging |
Het |
Pax3 |
C |
T |
1: 78,171,962 (GRCm39) |
V83I |
probably damaging |
Het |
Prmt5 |
C |
T |
14: 54,747,322 (GRCm39) |
R485H |
probably damaging |
Het |
Ptprq |
A |
G |
10: 107,418,220 (GRCm39) |
Y1719H |
probably damaging |
Het |
Ranbp2 |
A |
T |
10: 58,315,900 (GRCm39) |
I2207F |
possibly damaging |
Het |
Rock2 |
T |
A |
12: 17,021,042 (GRCm39) |
|
probably benign |
Het |
Sema3c |
G |
A |
5: 17,867,961 (GRCm39) |
R124H |
probably damaging |
Het |
Serpina1e |
G |
A |
12: 103,917,393 (GRCm39) |
T92M |
probably benign |
Het |
Sgip1 |
T |
C |
4: 102,768,667 (GRCm39) |
L83P |
probably benign |
Het |
Tmem178 |
A |
G |
17: 81,297,235 (GRCm39) |
T206A |
probably damaging |
Het |
Tmem207 |
A |
T |
16: 26,336,617 (GRCm39) |
Y46N |
possibly damaging |
Het |
Tyk2 |
A |
G |
9: 21,031,703 (GRCm39) |
L429P |
probably damaging |
Het |
|
Other mutations in Tm9sf2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01364:Tm9sf2
|
APN |
14 |
122,380,872 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01995:Tm9sf2
|
APN |
14 |
122,380,883 (GRCm39) |
missense |
probably benign |
0.25 |
IGL02173:Tm9sf2
|
APN |
14 |
122,380,835 (GRCm39) |
missense |
probably benign |
0.13 |
IGL02328:Tm9sf2
|
APN |
14 |
122,380,842 (GRCm39) |
missense |
possibly damaging |
0.79 |
IGL03231:Tm9sf2
|
APN |
14 |
122,378,664 (GRCm39) |
missense |
possibly damaging |
0.95 |
R0367:Tm9sf2
|
UTSW |
14 |
122,392,780 (GRCm39) |
missense |
probably benign |
0.06 |
R1959:Tm9sf2
|
UTSW |
14 |
122,363,576 (GRCm39) |
missense |
probably benign |
0.42 |
R2251:Tm9sf2
|
UTSW |
14 |
122,377,143 (GRCm39) |
missense |
probably benign |
|
R2504:Tm9sf2
|
UTSW |
14 |
122,396,096 (GRCm39) |
missense |
probably benign |
0.01 |
R4791:Tm9sf2
|
UTSW |
14 |
122,377,062 (GRCm39) |
missense |
probably benign |
0.00 |
R4795:Tm9sf2
|
UTSW |
14 |
122,387,252 (GRCm39) |
splice site |
probably null |
|
R4851:Tm9sf2
|
UTSW |
14 |
122,378,616 (GRCm39) |
missense |
probably benign |
0.00 |
R5063:Tm9sf2
|
UTSW |
14 |
122,382,558 (GRCm39) |
missense |
probably damaging |
1.00 |
R5117:Tm9sf2
|
UTSW |
14 |
122,380,913 (GRCm39) |
missense |
probably benign |
0.30 |
R5443:Tm9sf2
|
UTSW |
14 |
122,363,607 (GRCm39) |
missense |
probably damaging |
0.97 |
R5677:Tm9sf2
|
UTSW |
14 |
122,389,374 (GRCm39) |
critical splice acceptor site |
probably null |
|
R5966:Tm9sf2
|
UTSW |
14 |
122,374,921 (GRCm39) |
intron |
probably benign |
|
R6465:Tm9sf2
|
UTSW |
14 |
122,378,619 (GRCm39) |
missense |
probably benign |
0.16 |
R6873:Tm9sf2
|
UTSW |
14 |
122,382,525 (GRCm39) |
missense |
probably damaging |
1.00 |
R7403:Tm9sf2
|
UTSW |
14 |
122,378,640 (GRCm39) |
missense |
probably benign |
0.33 |
R7531:Tm9sf2
|
UTSW |
14 |
122,379,824 (GRCm39) |
missense |
possibly damaging |
0.49 |
R8176:Tm9sf2
|
UTSW |
14 |
122,374,913 (GRCm39) |
missense |
probably benign |
0.01 |
R8447:Tm9sf2
|
UTSW |
14 |
122,377,180 (GRCm39) |
missense |
probably damaging |
1.00 |
R8773:Tm9sf2
|
UTSW |
14 |
122,380,883 (GRCm39) |
missense |
probably benign |
0.21 |
R9039:Tm9sf2
|
UTSW |
14 |
122,363,576 (GRCm39) |
missense |
probably benign |
0.42 |
|
Posted On |
2015-04-16 |