Incidental Mutation 'R5203:Or12d2'
| ID |
398292 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or12d2
|
| Ensembl Gene |
ENSMUSG00000091531 |
| Gene Name |
olfactory receptor family 12 subfamily D member 2 |
| Synonyms |
Olfr102, MOR250-4, GA_x6K02T2PSCP-1775063-1774137 |
| MMRRC Submission |
042778-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.077)
|
| Stock # |
R5203 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
17 |
| Chromosomal Location |
37624302-37625328 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 37625092 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Leucine to Glutamine
at position 61
(L61Q)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149168
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000169373]
[ENSMUST00000217590]
|
| AlphaFold |
B2RT33 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000169373
AA Change: L61Q
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000126737
Gene: ENSMUSG00000091531
AA Change: L61Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
306 |
2.6e-52 |
PFAM |
|
Pfam:7tm_1
|
39 |
289 |
8.3e-23 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000217590
AA Change: L61Q
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.1%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 35 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4930562C15Rik |
T |
G |
16: 4,653,462 (GRCm39) |
S4A |
unknown |
Het |
| Adgrv1 |
A |
T |
13: 81,659,024 (GRCm39) |
N2053K |
possibly damaging |
Het |
| Akr1c13 |
C |
T |
13: 4,247,896 (GRCm39) |
R223* |
probably null |
Het |
| Arhgef11 |
A |
G |
3: 87,642,664 (GRCm39) |
Y1370C |
probably damaging |
Het |
| Arid1a |
T |
C |
4: 133,409,314 (GRCm39) |
E1731G |
unknown |
Het |
| Cyp2c54 |
A |
T |
19: 40,060,918 (GRCm39) |
V75E |
probably damaging |
Het |
| Fa2h |
A |
G |
8: 112,075,996 (GRCm39) |
M209T |
probably benign |
Het |
| Fam171a1 |
T |
C |
2: 3,224,582 (GRCm39) |
I311T |
probably damaging |
Het |
| Fat3 |
C |
A |
9: 16,289,438 (GRCm39) |
L28F |
possibly damaging |
Het |
| Fntb |
C |
A |
12: 76,884,346 (GRCm39) |
P22Q |
probably benign |
Het |
| Gmeb1 |
T |
C |
4: 131,959,320 (GRCm39) |
|
probably null |
Het |
| Gpr22 |
A |
G |
12: 31,759,787 (GRCm39) |
S112P |
probably damaging |
Het |
| Htr7 |
A |
G |
19: 35,941,792 (GRCm39) |
S464P |
probably benign |
Het |
| Igkv4-80 |
A |
C |
6: 68,993,649 (GRCm39) |
S81A |
probably benign |
Het |
| Krt79 |
A |
G |
15: 101,838,175 (GRCm39) |
S527P |
unknown |
Het |
| Lnpep |
A |
T |
17: 17,757,325 (GRCm39) |
D858E |
probably damaging |
Het |
| Ly9 |
C |
A |
1: 171,427,347 (GRCm39) |
V403F |
probably damaging |
Het |
| Mindy4 |
A |
G |
6: 55,232,646 (GRCm39) |
Q363R |
probably benign |
Het |
| Mtmr10 |
G |
A |
7: 63,967,909 (GRCm39) |
V273I |
probably benign |
Het |
| Mup2 |
T |
A |
4: 60,139,728 (GRCm39) |
E20V |
probably damaging |
Het |
| Myo16 |
A |
G |
8: 10,410,995 (GRCm39) |
N151S |
probably damaging |
Het |
| Nod2 |
A |
C |
8: 89,391,079 (GRCm39) |
D462A |
probably damaging |
Het |
| Nt5c2 |
A |
G |
19: 46,878,247 (GRCm39) |
Y497H |
probably damaging |
Het |
| Or4k44 |
A |
C |
2: 111,367,981 (GRCm39) |
Y218D |
probably damaging |
Het |
| Otx1 |
C |
A |
11: 21,947,037 (GRCm39) |
A91S |
probably damaging |
Het |
| Pcdhac1 |
A |
T |
18: 37,224,243 (GRCm39) |
D352V |
probably damaging |
Het |
| Psap |
A |
G |
10: 60,130,755 (GRCm39) |
D195G |
probably damaging |
Het |
| Scyl1 |
G |
A |
19: 5,821,395 (GRCm39) |
|
probably benign |
Het |
| Sh3bgr |
A |
G |
16: 96,025,720 (GRCm39) |
|
probably benign |
Het |
| Slc2a12 |
G |
T |
10: 22,521,213 (GRCm39) |
|
probably null |
Het |
| Slc2a12 |
G |
C |
10: 22,568,117 (GRCm39) |
V515L |
probably benign |
Het |
| Ttc17 |
T |
C |
2: 94,209,061 (GRCm39) |
Y131C |
probably damaging |
Het |
| Ttc27 |
A |
G |
17: 75,084,649 (GRCm39) |
D419G |
probably damaging |
Het |
| Ubxn8 |
T |
C |
8: 34,123,639 (GRCm39) |
E100G |
probably damaging |
Het |
| Zpbp |
T |
C |
11: 11,358,451 (GRCm39) |
E272G |
probably damaging |
Het |
|
| Other mutations in Or12d2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00901:Or12d2
|
APN |
17 |
37,624,598 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
IGL01947:Or12d2
|
APN |
17 |
37,624,556 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02164:Or12d2
|
APN |
17 |
37,624,578 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02465:Or12d2
|
APN |
17 |
37,624,802 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03095:Or12d2
|
APN |
17 |
37,624,664 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0712:Or12d2
|
UTSW |
17 |
37,624,975 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1572:Or12d2
|
UTSW |
17 |
37,624,371 (GRCm39) |
missense |
probably benign |
|
|
R1749:Or12d2
|
UTSW |
17 |
37,624,952 (GRCm39) |
missense |
probably benign |
0.05 |
|
R3083:Or12d2
|
UTSW |
17 |
37,625,086 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4022:Or12d2
|
UTSW |
17 |
37,625,165 (GRCm39) |
missense |
probably benign |
|
|
R5367:Or12d2
|
UTSW |
17 |
37,625,147 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5387:Or12d2
|
UTSW |
17 |
37,625,183 (GRCm39) |
missense |
probably benign |
0.22 |
|
R5488:Or12d2
|
UTSW |
17 |
37,624,559 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6804:Or12d2
|
UTSW |
17 |
37,625,021 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7442:Or12d2
|
UTSW |
17 |
37,624,816 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R7473:Or12d2
|
UTSW |
17 |
37,624,522 (GRCm39) |
missense |
probably benign |
0.03 |
|
R8110:Or12d2
|
UTSW |
17 |
37,624,604 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8887:Or12d2
|
UTSW |
17 |
37,624,642 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9400:Or12d2
|
UTSW |
17 |
37,624,554 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AGCGGTCAAATGCCATCAC -3'
(R):5'- ACTGGTTAACATGCAGGGTAG -3'
Sequencing Primer
(F):5'- ATCACTGGCAGCAGCATG -3'
(R):5'- GGTGATGTCTAATCAAACCTCAGTC -3'
|
| Posted On |
2016-07-06 |
Incidental Mutation