Incidental Mutation 'IGL03281:Selenbp1'
ID |
415600 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Selenbp1
|
Ensembl Gene |
ENSMUSG00000068874 |
Gene Name |
selenium binding protein 1 |
Synonyms |
Lp56, Lpsb |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL03281
|
Quality Score |
|
Status
|
|
Chromosome |
3 |
Chromosomal Location |
94840394-94852069 bp(+) (GRCm39) |
Type of Mutation |
nonsense |
DNA Base Change (assembly) |
A to T
at 94844621 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Lysine to Stop codon
at position 93
(K93*)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000118563
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000090839]
[ENSMUST00000134202]
[ENSMUST00000140757]
|
AlphaFold |
P17563 |
Predicted Effect |
probably null
Transcript: ENSMUST00000090839
AA Change: K93*
|
SMART Domains |
Protein: ENSMUSP00000088349 Gene: ENSMUSG00000068874 AA Change: K93*
Domain | Start | End | E-Value | Type |
Pfam:SBP56
|
6 |
472 |
3.2e-225 |
PFAM |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000134202
AA Change: K93*
|
SMART Domains |
Protein: ENSMUSP00000120159 Gene: ENSMUSG00000068874 AA Change: K93*
Domain | Start | End | E-Value | Type |
Pfam:SBP56
|
6 |
123 |
4.7e-56 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139949
|
Predicted Effect |
probably null
Transcript: ENSMUST00000140757
AA Change: K93*
|
SMART Domains |
Protein: ENSMUSP00000118563 Gene: ENSMUSG00000068874 AA Change: K93*
Domain | Start | End | E-Value | Type |
Pfam:SBP56
|
6 |
123 |
4.7e-56 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000145551
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
PHENOTYPE: Mice homozygous for a knock-out allele exhibit sex-specific changes in organ weights. Mice homozygous for a different allele lack methanethiol oxidase activity and exhibit an increase in dimethylsulfide and dimethyl-sulfone serum levels. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 26 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2810021J22Rik |
G |
A |
11: 58,771,601 (GRCm39) |
R361H |
probably benign |
Het |
Abcd2 |
G |
T |
15: 91,035,876 (GRCm39) |
T663K |
probably damaging |
Het |
Btbd8 |
A |
T |
5: 107,651,742 (GRCm39) |
T212S |
probably benign |
Het |
Bud23 |
C |
T |
5: 135,092,741 (GRCm39) |
R28H |
probably benign |
Het |
Celsr2 |
T |
C |
3: 108,320,256 (GRCm39) |
Y852C |
probably damaging |
Het |
Dll1 |
C |
A |
17: 15,593,866 (GRCm39) |
R167L |
probably benign |
Het |
Hmgxb4 |
A |
G |
8: 75,750,790 (GRCm39) |
T538A |
probably damaging |
Het |
Hrh4 |
T |
C |
18: 13,155,526 (GRCm39) |
V355A |
possibly damaging |
Het |
Hrnr |
A |
T |
3: 93,230,158 (GRCm39) |
E132V |
probably benign |
Het |
Ighv7-1 |
A |
T |
12: 113,860,571 (GRCm39) |
|
probably benign |
Het |
Kcnu1 |
A |
T |
8: 26,382,105 (GRCm39) |
Q485L |
probably null |
Het |
Lrp1b |
T |
A |
2: 40,615,526 (GRCm39) |
M3626L |
probably benign |
Het |
Magea6 |
G |
T |
X: 153,707,623 (GRCm39) |
C144* |
probably null |
Het |
Map1a |
G |
T |
2: 121,135,541 (GRCm39) |
R1881L |
probably damaging |
Het |
Naip2 |
T |
A |
13: 100,298,128 (GRCm39) |
Y636F |
probably damaging |
Het |
Or12j5 |
T |
A |
7: 140,083,713 (GRCm39) |
I220F |
probably damaging |
Het |
Or6c2 |
T |
A |
10: 129,362,272 (GRCm39) |
F59I |
probably benign |
Het |
Prg4 |
A |
G |
1: 150,325,839 (GRCm39) |
|
probably benign |
Het |
Ptpn4 |
T |
G |
1: 119,587,642 (GRCm39) |
Q900H |
probably damaging |
Het |
Ralgps1 |
A |
G |
2: 33,062,428 (GRCm39) |
|
probably null |
Het |
Rasgrp4 |
C |
T |
7: 28,845,450 (GRCm39) |
A381V |
possibly damaging |
Het |
Skint5 |
T |
A |
4: 113,524,415 (GRCm39) |
K855N |
unknown |
Het |
Tssk4 |
T |
C |
14: 55,887,885 (GRCm39) |
V27A |
possibly damaging |
Het |
Ttc39a |
C |
A |
4: 109,290,219 (GRCm39) |
Q310K |
possibly damaging |
Het |
Utp18 |
C |
T |
11: 93,766,784 (GRCm39) |
V276I |
probably damaging |
Het |
Vmn2r45 |
C |
A |
7: 8,486,603 (GRCm39) |
L228F |
probably damaging |
Het |
|
Other mutations in Selenbp1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01970:Selenbp1
|
APN |
3 |
94,844,313 (GRCm39) |
missense |
probably benign |
0.24 |
PIT4131001:Selenbp1
|
UTSW |
3 |
94,844,607 (GRCm39) |
missense |
probably damaging |
0.99 |
R0415:Selenbp1
|
UTSW |
3 |
94,844,224 (GRCm39) |
missense |
possibly damaging |
0.61 |
R1132:Selenbp1
|
UTSW |
3 |
94,844,644 (GRCm39) |
missense |
probably benign |
0.02 |
R1421:Selenbp1
|
UTSW |
3 |
94,851,183 (GRCm39) |
missense |
probably benign |
|
R1522:Selenbp1
|
UTSW |
3 |
94,844,669 (GRCm39) |
missense |
probably damaging |
1.00 |
R1676:Selenbp1
|
UTSW |
3 |
94,851,854 (GRCm39) |
missense |
probably damaging |
1.00 |
R1701:Selenbp1
|
UTSW |
3 |
94,844,701 (GRCm39) |
missense |
probably damaging |
1.00 |
R2152:Selenbp1
|
UTSW |
3 |
94,851,441 (GRCm39) |
missense |
probably damaging |
1.00 |
R3033:Selenbp1
|
UTSW |
3 |
94,845,351 (GRCm39) |
missense |
probably benign |
0.22 |
R4363:Selenbp1
|
UTSW |
3 |
94,850,060 (GRCm39) |
splice site |
probably null |
|
R4631:Selenbp1
|
UTSW |
3 |
94,851,879 (GRCm39) |
makesense |
probably null |
|
R4798:Selenbp1
|
UTSW |
3 |
94,851,211 (GRCm39) |
missense |
probably benign |
0.27 |
R4935:Selenbp1
|
UTSW |
3 |
94,845,269 (GRCm39) |
missense |
probably benign |
0.10 |
R5464:Selenbp1
|
UTSW |
3 |
94,851,727 (GRCm39) |
missense |
probably benign |
|
R6253:Selenbp1
|
UTSW |
3 |
94,851,157 (GRCm39) |
missense |
possibly damaging |
0.95 |
R6314:Selenbp1
|
UTSW |
3 |
94,844,576 (GRCm39) |
missense |
probably damaging |
1.00 |
R7199:Selenbp1
|
UTSW |
3 |
94,851,745 (GRCm39) |
missense |
possibly damaging |
0.79 |
R7330:Selenbp1
|
UTSW |
3 |
94,847,021 (GRCm39) |
missense |
probably benign |
|
R7637:Selenbp1
|
UTSW |
3 |
94,844,659 (GRCm39) |
nonsense |
probably null |
|
R7658:Selenbp1
|
UTSW |
3 |
94,851,413 (GRCm39) |
missense |
probably benign |
0.03 |
R8739:Selenbp1
|
UTSW |
3 |
94,844,601 (GRCm39) |
missense |
probably damaging |
0.99 |
R8803:Selenbp1
|
UTSW |
3 |
94,851,821 (GRCm39) |
missense |
possibly damaging |
0.88 |
R8987:Selenbp1
|
UTSW |
3 |
94,847,425 (GRCm39) |
missense |
probably benign |
0.10 |
R9145:Selenbp1
|
UTSW |
3 |
94,851,414 (GRCm39) |
missense |
probably benign |
0.38 |
R9209:Selenbp1
|
UTSW |
3 |
94,847,079 (GRCm39) |
missense |
probably benign |
0.08 |
R9747:Selenbp1
|
UTSW |
3 |
94,844,648 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Posted On |
2016-08-02 |