Mutagenetix > Incidental Mutation

Incidental Mutation 'R6044:Padi4'

483706

Institutional Source

Beutler Lab

Gene Symbol

Padi4

Ensembl Gene

ENSMUSG00000025330

Gene Name

peptidyl arginine deiminase, type IV

Synonyms

Pdi4, Pad4, PAD type IV

MMRRC Submission

044212-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6044 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

140473176-140501547 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 140475438 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 576 (S576P)

Ref Sequence

ENSEMBL: ENSMUSP00000026381 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026381]

AlphaFold

Q9Z183

Predicted Effect

possibly damaging
Transcript: ENSMUST00000026381
AA Change: S576P

PolyPhen 2 Score 0.944 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000026381
Gene: ENSMUSG00000025330
AA Change: S576P

Domain	Start	End	E-Value	Type
Pfam:PAD_N	1	111	2.3e-38	PFAM
Pfam:PAD_M	113	273	2.4e-63	PFAM
Pfam:PAD	283	663	2.4e-176	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137516

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.1%
20x: 94.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of a gene family which encodes enzymes responsible for the conversion of arginine residues to citrulline residues. This gene may play a role in granulocyte and macrophage development leading to inflammation and immune response. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mice are viable albeit reduced number than expected were born from heterozygous crosses, and shows decreased antibacterial immune responses. Mice homozygous for a different knock-out allele exhibit decreased weight loss in response to viral infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	G	A	14: 32,382,614 (GRCm39)	S1117L	possibly damaging	Het
Adamts20	A	T	15: 94,180,364 (GRCm39)	Y1764N	probably damaging	Het
Adamtsl1	A	T	4: 86,130,928 (GRCm39)	D223V	probably damaging	Het
Agbl1	T	C	7: 75,967,868 (GRCm39)	V31A	possibly damaging	Het
Alk	T	C	17: 72,299,095 (GRCm39)	H462R	probably benign	Het
Amt	A	T	9: 108,174,450 (GRCm39)	T72S	probably damaging	Het
Atp12a	T	A	14: 56,613,612 (GRCm39)	D461E	probably damaging	Het
Bcan	C	A	3: 87,902,950 (GRCm39)	C276F	probably damaging	Het
Crispld2	T	C	8: 120,737,410 (GRCm39)	S54P	possibly damaging	Het
Cyp11a1	A	T	9: 57,933,987 (GRCm39)	N478I	probably damaging	Het
Des	A	T	1: 75,340,113 (GRCm39)		probably null	Het
Dnajc6	A	T	4: 101,473,774 (GRCm39)	I427F	probably benign	Het
Eml4	T	G	17: 83,753,379 (GRCm39)	L281R	probably damaging	Het
Fam186a	T	C	15: 99,839,878 (GRCm39)	Y2122C	probably damaging	Het
Fndc11	T	A	2: 180,863,459 (GRCm39)	L88Q	probably damaging	Het
Foxo1	A	G	3: 52,253,258 (GRCm39)	M474V	probably benign	Het
Gap43	A	T	16: 42,112,550 (GRCm39)	D70E	probably benign	Het
Gemin4	T	C	11: 76,103,760 (GRCm39)	M334V	probably benign	Het
Gm973	T	C	1: 59,667,393 (GRCm39)	L718P	probably benign	Het
Gprin3	G	T	6: 59,330,657 (GRCm39)	T550N	possibly damaging	Het
Hddc3	T	A	7: 79,993,332 (GRCm39)	V53E	probably benign	Het
Itpr2	A	T	6: 146,298,449 (GRCm39)	D12E	probably null	Het
Klri2	T	A	6: 129,717,247 (GRCm39)	E45D	probably damaging	Het
Lct	A	G	1: 128,235,717 (GRCm39)	V430A	possibly damaging	Het
Mcm8	T	C	2: 132,673,600 (GRCm39)		probably null	Het
Mmp12	A	G	9: 7,350,050 (GRCm39)	T184A	possibly damaging	Het
Morc3	T	C	16: 93,663,330 (GRCm39)	V511A	probably benign	Het
Mta2	T	C	19: 8,925,695 (GRCm39)	Y397H	probably damaging	Het
Naa50	G	A	16: 43,979,890 (GRCm39)	E93K	possibly damaging	Het
Or14j2	G	A	17: 37,885,426 (GRCm39)	T296M	probably damaging	Het
Or2t26	T	C	11: 49,039,522 (GRCm39)	V146A	probably benign	Het
Or4a77	T	A	2: 89,487,516 (GRCm39)	I90F	probably damaging	Het
Or4c126	T	C	2: 89,823,761 (GRCm39)	I8T	possibly damaging	Het
Or4k40	T	C	2: 111,250,423 (GRCm39)	N291S	probably damaging	Het
Poglut2	A	T	1: 44,153,611 (GRCm39)	L221*	probably null	Het
Prss47	A	T	13: 65,197,120 (GRCm39)	Y111*	probably null	Het
Ptprm	A	G	17: 67,000,857 (GRCm39)	V1100A	probably damaging	Het
Rab11fip3	G	A	17: 26,286,843 (GRCm39)	P437S	possibly damaging	Het
Rsph14	C	T	10: 74,867,102 (GRCm39)	D15N	probably benign	Het
Slc35e2	C	T	4: 155,694,483 (GRCm39)	P10L	probably benign	Het
Slco1a1	A	G	6: 141,885,743 (GRCm39)	V94A	probably benign	Het
Smpdl3a	A	G	10: 57,687,358 (GRCm39)	E362G	possibly damaging	Het
Sva	A	T	6: 42,017,034 (GRCm39)	Y47F	probably benign	Het
Tatdn3	A	G	1: 190,788,558 (GRCm39)		probably null	Het
Tlcd4	A	T	3: 121,001,018 (GRCm39)	I205K	probably damaging	Het
Tlcd5	A	G	9: 43,024,903 (GRCm39)	S18P	probably benign	Het
Tmem131	G	A	1: 36,920,422 (GRCm39)	Q93*	probably null	Het
Trpm7	T	C	2: 126,656,665 (GRCm39)	E1184G	probably damaging	Het
Ubr1	T	C	2: 120,693,202 (GRCm39)	I1735V	probably benign	Het
Usp40	A	T	1: 87,917,872 (GRCm39)	I325K	probably benign	Het
Vmn2r27	T	G	6: 124,208,731 (GRCm39)	I5L	probably benign	Het
Wee1	C	T	7: 109,738,513 (GRCm39)	T542I	probably benign	Het
Wrn	G	A	8: 33,726,457 (GRCm39)	P1129S	probably damaging	Het
Zfyve16	G	A	13: 92,659,174 (GRCm39)	Q246*	probably null	Het

Other mutations in Padi4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02439:Padi4	APN	4	140,473,532 (GRCm39)	missense	probably damaging	1.00
R0411:Padi4	UTSW	4	140,475,760 (GRCm39)	critical splice donor site	probably benign
R0528:Padi4	UTSW	4	140,496,740 (GRCm39)	missense	possibly damaging	0.75
R0544:Padi4	UTSW	4	140,475,760 (GRCm39)	critical splice donor site	probably benign
R0547:Padi4	UTSW	4	140,475,760 (GRCm39)	critical splice donor site	probably benign
R0548:Padi4	UTSW	4	140,475,760 (GRCm39)	critical splice donor site	probably benign
R0633:Padi4	UTSW	4	140,484,896 (GRCm39)	missense	probably damaging	1.00
R1112:Padi4	UTSW	4	140,485,427 (GRCm39)	missense	probably benign	0.04
R1411:Padi4	UTSW	4	140,479,914 (GRCm39)	missense	probably damaging	1.00
R1573:Padi4	UTSW	4	140,484,881 (GRCm39)	missense	possibly damaging	0.86
R1741:Padi4	UTSW	4	140,473,481 (GRCm39)	missense	probably damaging	1.00
R2256:Padi4	UTSW	4	140,487,251 (GRCm39)	missense	possibly damaging	0.77
R2257:Padi4	UTSW	4	140,487,251 (GRCm39)	missense	possibly damaging	0.77
R5257:Padi4	UTSW	4	140,473,515 (GRCm39)	missense	probably benign	0.01
R5266:Padi4	UTSW	4	140,473,442 (GRCm39)	missense	possibly damaging	0.86
R6057:Padi4	UTSW	4	140,487,351 (GRCm39)	missense	probably damaging	0.99
R6180:Padi4	UTSW	4	140,483,784 (GRCm39)	missense	possibly damaging	0.87
R7197:Padi4	UTSW	4	140,488,969 (GRCm39)	nonsense	probably null
R7395:Padi4	UTSW	4	140,488,983 (GRCm39)	missense	probably damaging	1.00
R8421:Padi4	UTSW	4	140,475,533 (GRCm39)	missense	probably damaging	1.00
R8546:Padi4	UTSW	4	140,484,841 (GRCm39)	missense	probably damaging	0.98
R8697:Padi4	UTSW	4	140,485,230 (GRCm39)	frame shift	probably null
R8857:Padi4	UTSW	4	140,501,472 (GRCm39)	missense	probably damaging	0.99
R9060:Padi4	UTSW	4	140,477,953 (GRCm39)	missense	probably damaging	1.00
R9261:Padi4	UTSW	4	140,479,926 (GRCm39)	missense	probably damaging	1.00
R9453:Padi4	UTSW	4	140,479,950 (GRCm39)	missense	probably benign	0.15
RF004:Padi4	UTSW	4	140,487,269 (GRCm39)	missense	probably damaging	1.00
X0028:Padi4	UTSW	4	140,473,435 (GRCm39)	makesense	probably null
Z1177:Padi4	UTSW	4	140,483,758 (GRCm39)	missense	possibly damaging	0.77

Predicted Primers

PCR Primer
(F):5'- ACATTGTGTGAGGCTCAGAAG -3'
(R):5'- AGGTCCCTGAGATCCTGAAC -3'

Sequencing Primer
(F):5'- CTCAGAAGAGGCTCTGGGTG -3'
(R):5'- TGAGATCCTGAACCCCCAG -3'

Posted On

2017-07-14