Mutagenetix > Incidental Mutation

Incidental Mutation 'R8343:Tmem216'

645055

Institutional Source

Beutler Lab

Gene Symbol

Tmem216

Ensembl Gene

ENSMUSG00000024667

Gene Name

transmembrane protein 216

Synonyms

4921533J23Rik, A930021F15Rik, 1110017C22Rik, 2810441K11Rik

MMRRC Submission

067866-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.092) question?

Stock #

R8343 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

10516690-10533663 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 10529336 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 17 (T17S)

Ref Sequence

ENSEMBL: ENSMUSP00000123397 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025569] [ENSMUST00000038379] [ENSMUST00000059582] [ENSMUST00000123788] [ENSMUST00000145210] [ENSMUST00000154383]

AlphaFold

Q9CQC4

Predicted Effect

probably benign
Transcript: ENSMUST00000025569
AA Change: T17S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000025569
Gene: ENSMUSG00000024667
AA Change: T17S

Domain	Start	End	E-Value	Type
Pfam:Transmemb_17	1	69	2.8e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000038379

SMART Domains

Protein: ENSMUSP00000038958
Gene: ENSMUSG00000034820

Domain	Start	End	E-Value	Type
low complexity region	51	63	N/A	INTRINSIC
RRM	83	158	7.31e-8	SMART
low complexity region	188	202	N/A	INTRINSIC
low complexity region	228	260	N/A	INTRINSIC
low complexity region	265	291	N/A	INTRINSIC
low complexity region	346	362	N/A	INTRINSIC
low complexity region	405	439	N/A	INTRINSIC
low complexity region	454	471	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000059582
AA Change: T17S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000059878
Gene: ENSMUSG00000024667
AA Change: T17S

Domain	Start	End	E-Value	Type
Pfam:Transmemb_17	1	69	2.8e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000123788
AA Change: T71S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000119596
Gene: ENSMUSG00000024667
AA Change: T71S

Domain	Start	End	E-Value	Type
Pfam:Transmemb_17	15	123	9.9e-29	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000145210
AA Change: T17S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000123397
Gene: ENSMUSG00000024667
AA Change: T17S

Domain	Start	End	E-Value	Type
Pfam:Transmemb_17	1	69	2.8e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000154383
AA Change: T71S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000115319
Gene: ENSMUSG00000024667
AA Change: T71S

Domain	Start	End	E-Value	Type
Pfam:Transmemb_17	15	122	2.2e-33	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

97% (64/66)

MGI Phenotype

FUNCTION: This gene encodes a transmembrane protein which is involved in regulation of signaling and trafficking of associated proteins. In humans, mutations in this gene are associated with ciliopathies including Joubert, Meckel and related syndromes. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2013]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aars1	T	A	8: 111,767,361 (GRCm39)	W156R	probably damaging	Het
Acvr1	T	A	2: 58,364,286 (GRCm39)		probably null	Het
Adamts2	G	T	11: 50,494,315 (GRCm39)	V130L	probably damaging	Het
Adcy4	C	T	14: 56,012,697 (GRCm39)	V541I	probably benign	Het
Adgrl2	C	T	3: 148,552,542 (GRCm39)	V654I	probably damaging	Het
Ago3	T	A	4: 126,270,721 (GRCm39)	K258*	probably null	Het
Akap11	A	T	14: 78,749,929 (GRCm39)	S819R		Het
Alox5ap	T	C	5: 149,224,419 (GRCm39)	F121L	probably damaging	Het
Baz2b	A	T	2: 59,731,858 (GRCm39)	M2060K	probably damaging	Het
Bltp3b	T	C	10: 89,627,281 (GRCm39)	S449P	probably benign	Het
C030005K15Rik	T	C	10: 97,561,414 (GRCm39)	I106V	unknown	Het
Carmil2	T	A	8: 106,417,716 (GRCm39)	S604T	probably benign	Het
Ccdc121rt2	C	T	5: 112,598,653 (GRCm39)	T400I	probably benign	Het
Cdhr1	T	C	14: 36,813,935 (GRCm39)	T164A	probably benign	Het
Dhx30	T	C	9: 109,914,569 (GRCm39)	E976G	possibly damaging	Het
Dnah17	C	T	11: 118,005,021 (GRCm39)	G788R	probably benign	Het
Dus2	T	C	8: 106,722,645 (GRCm39)		probably benign	Het
Etv6	T	C	6: 134,225,717 (GRCm39)	V316A	possibly damaging	Het
Fabp9	T	G	3: 10,259,085 (GRCm39)	K107T	possibly damaging	Het
Fmn2	CCCTCCTCTCCCTGGAATGGGAATACCTCCCCCACCTCCTCTCCCTGGAATGGGAATACCTCCCCCACCTCCTCTCCCTGGAATGGGAATATCTCCCCTACCTCCTCTCCCTGGAATGGGAATACCTCC	CCCTCCTCTCCCTGGAATGGGAATACCTCCCCCACCTCCTCTCCCTGGAATGGGAATATCTCCCCTACCTCCTCTCCCTGGAATGGGAATACCTCC	1: 174,436,769 (GRCm39)		probably benign	Het
Gapdh	A	G	6: 125,140,226 (GRCm39)	V92A	probably benign	Het
Gfy	A	G	7: 44,826,019 (GRCm39)	L453P	probably damaging	Het
Gp2	C	T	7: 119,042,010 (GRCm39)	C505Y	probably benign	Het
Gtpbp8	T	C	16: 44,566,676 (GRCm39)	R9G	probably benign	Het
Hipk4	G	T	7: 27,223,033 (GRCm39)	R31L	probably damaging	Het
Htt	T	A	5: 35,063,068 (GRCm39)	M2900K	probably damaging	Het
Ighv1-20	T	C	12: 114,687,810 (GRCm39)	I6V	probably benign	Het
Il17d	C	T	14: 57,779,937 (GRCm39)	T153I	probably damaging	Het
Izumo3	T	A	4: 92,034,581 (GRCm39)	N117I	probably damaging	Het
Kcnh7	T	C	2: 62,680,879 (GRCm39)	D236G	probably benign	Het
Kmt2d	T	C	15: 98,750,478 (GRCm39)	D2405G	unknown	Het
Map4k2	T	C	19: 6,396,596 (GRCm39)	W533R	probably damaging	Het
Matn1	C	A	4: 130,673,300 (GRCm39)	Y89*	probably null	Het
Mettl18	T	A	1: 163,824,509 (GRCm39)	Y277N	probably damaging	Het
Muc5b	G	A	7: 141,417,898 (GRCm39)	G3615S	probably benign	Het
Mycbp2	A	C	14: 103,398,111 (GRCm39)		probably null	Het
Myh4	T	A	11: 67,143,390 (GRCm39)	S1041T	possibly damaging	Het
Myl10	G	C	5: 136,726,825 (GRCm39)	V70L	probably benign	Het
Naaladl1	T	C	19: 6,159,703 (GRCm39)	V378A	possibly damaging	Het
Nars1	T	C	18: 64,637,458 (GRCm39)	D374G	probably benign	Het
Neb	C	T	2: 52,198,283 (GRCm39)		probably null	Het
Neurl1b	A	G	17: 26,650,965 (GRCm39)	Y79C	probably damaging	Het
Nynrin	A	G	14: 56,101,248 (GRCm39)	T306A	probably benign	Het
Ola1	G	T	2: 73,029,745 (GRCm39)	R125S	probably damaging	Het
Or12d15	T	A	17: 37,694,122 (GRCm39)	F221L	probably benign	Het
Or51a43	A	T	7: 103,717,383 (GRCm39)	V285D	probably damaging	Het
Pak1ip1	C	A	13: 41,158,214 (GRCm39)	T29K	probably benign	Het
Podnl1	T	A	8: 84,857,402 (GRCm39)	L337H		Het
Rictor	T	G	15: 6,807,800 (GRCm39)		probably null	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,229,111 (GRCm39)		probably benign	Het
Sel1l2	T	C	2: 140,072,753 (GRCm39)	I627M	probably benign	Het
Sh3rf2	T	C	18: 42,244,493 (GRCm39)	S352P	probably damaging	Het
Slc6a6	G	A	6: 91,703,224 (GRCm39)	W199*	probably null	Het
Smc2	T	A	4: 52,450,965 (GRCm39)	V261E	probably benign	Het
Sorcs3	G	A	19: 48,692,808 (GRCm39)		probably null	Het
Spdye4a	T	A	5: 143,211,562 (GRCm39)	M1L	probably benign	Het
Stag1	T	C	9: 100,639,819 (GRCm39)	I125T	possibly damaging	Het
Stx8	T	A	11: 67,911,814 (GRCm39)	D177E	probably benign	Het
Sun2	T	C	15: 79,623,125 (GRCm39)	Y71C	probably damaging	Het
Tmed9	T	C	13: 55,742,617 (GRCm39)	F129L	probably benign	Het
Tmpo	A	T	10: 90,997,974 (GRCm39)	N604K	probably benign	Het
Tmprss11f	T	A	5: 86,681,666 (GRCm39)	I196F	probably benign	Het
Tnks	A	G	8: 35,301,738 (GRCm39)	F1244L	probably benign	Het
Tspan2	T	C	3: 102,676,226 (GRCm39)	C212R	probably damaging	Het
Tspan4	A	G	7: 141,071,718 (GRCm39)	D155G	probably damaging	Het
Ttc6	T	C	12: 57,707,282 (GRCm39)	F730L	possibly damaging	Het
Txnrd2	G	A	16: 18,245,291 (GRCm39)	A33T	unknown	Het
Wnk1	C	T	6: 119,940,454 (GRCm39)	R761H	probably damaging	Het
Zfp217	T	C	2: 169,962,024 (GRCm39)	D101G	probably damaging	Het
Zfp281	T	C	1: 136,555,620 (GRCm39)	F866S	probably damaging	Het

Other mutations in Tmem216

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0131:Tmem216	UTSW	19	10,531,970 (GRCm39)	missense	probably damaging	1.00
R2280:Tmem216	UTSW	19	10,529,237 (GRCm39)	missense	probably damaging	1.00
R2281:Tmem216	UTSW	19	10,529,237 (GRCm39)	missense	probably damaging	1.00
R5217:Tmem216	UTSW	19	10,529,155 (GRCm39)	missense	possibly damaging	0.62
R7575:Tmem216	UTSW	19	10,529,266 (GRCm39)	missense	probably benign
R8311:Tmem216	UTSW	19	10,529,191 (GRCm39)	missense	probably benign	0.13

Predicted Primers

PCR Primer
(F):5'- CAGCAGCTCTGAGCCACA -3'
(R):5'- AGGTCAGTGGGAATTAAGTTAGTTAG -3'

Sequencing Primer
(F):5'- GCTCTGAGCCACAAAAGAAG -3'
(R):5'- CAAAGCAGACTGCTGAAG -3'

Posted On

2020-09-02