Mutagenetix > Incidental Mutation

Incidental Mutation 'R7985:Glcci1'

651422

Institutional Source

Beutler Lab

Gene Symbol

Glcci1

Ensembl Gene

ENSMUSG00000029638

Gene Name

glucocorticoid induced transcript 1

Synonyms

A130036A18Rik, Tssn1, GIG18, Fam117c, 2310047L21Rik

MMRRC Submission

046026-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.088) question?

Stock #

R7985 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

8509600-8597548 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 8573186 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 225 (I225T)

Ref Sequence

ENSEMBL: ENSMUSP00000069444 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064285] [ENSMUST00000161217] [ENSMUST00000161494] [ENSMUST00000162383] [ENSMUST00000162564] [ENSMUST00000162567]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000064285
AA Change: I225T

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000069444
Gene: ENSMUSG00000029638
AA Change: I225T

Domain	Start	End	E-Value	Type
low complexity region	2	17	N/A	INTRINSIC
low complexity region	22	48	N/A	INTRINSIC
low complexity region	69	110	N/A	INTRINSIC
low complexity region	118	141	N/A	INTRINSIC
Pfam:FAM117	159	468	1.7e-132	PFAM
low complexity region	493	506	N/A	INTRINSIC
low complexity region	512	525	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000161217
AA Change: I37T

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000124167
Gene: ENSMUSG00000029638
AA Change: I37T

Domain	Start	End	E-Value	Type
Pfam:FAM117	1	284	3.2e-104	PFAM
low complexity region	305	318	N/A	INTRINSIC
low complexity region	324	337	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000161494
AA Change: I38T

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000124595
Gene: ENSMUSG00000029638
AA Change: I38T

Domain	Start	End	E-Value	Type
Pfam:FAM117	1	237	1e-83	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000162383
AA Change: I37T

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000125260
Gene: ENSMUSG00000029638
AA Change: I37T

Domain	Start	End	E-Value	Type
Pfam:FAM117	1	94	3.9e-33	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162564

Predicted Effect

probably damaging
Transcript: ENSMUST00000162567
AA Change: I38T

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000125079
Gene: ENSMUSG00000029638
AA Change: I38T

Domain	Start	End	E-Value	Type
Pfam:FAM117	1	285	2.7e-100	PFAM
low complexity region	306	319	N/A	INTRINSIC
low complexity region	325	338	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

98% (54/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein of unknown function. Expression of this gene is induced by glucocorticoids and may be an early marker for glucocorticoid-induced apoptosis. Single nucleotide polymorphisms in this gene are associated with a decreased response to inhaled glucocorticoids in asthmatic patients. [provided by RefSeq, Feb 2012]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932414N04Rik	C	A	2: 68,494,693 (GRCm39)	S77R	unknown	Het
Adamts1	T	C	16: 85,595,002 (GRCm39)	Y582C	probably damaging	Het
Ahnak2	A	T	12: 112,745,398 (GRCm39)	V683E		Het
Allc	T	G	12: 28,603,971 (GRCm39)	T371P	probably damaging	Het
Ankrd12	A	G	17: 66,291,191 (GRCm39)	I1414T	probably benign	Het
Bahcc1	A	G	11: 120,163,717 (GRCm39)	K672E	probably damaging	Het
C3ar1	A	T	6: 122,826,964 (GRCm39)	S418T	probably damaging	Het
Calca	A	G	7: 114,234,413 (GRCm39)	V12A	possibly damaging	Het
Carmil3	A	G	14: 55,734,409 (GRCm39)	E410G	probably benign	Het
Cfh	A	G	1: 140,036,564 (GRCm39)	F680S	probably damaging	Het
Cracd	T	C	5: 76,805,897 (GRCm39)	V123A	unknown	Het
Csf3	G	A	11: 98,593,273 (GRCm39)	G130D	probably damaging	Het
Cuedc1	A	T	11: 88,073,342 (GRCm39)	Q169L	probably benign	Het
Cyp2c66	T	A	19: 39,102,430 (GRCm39)	W20R	probably null	Het
Dguok	C	T	6: 83,457,914 (GRCm39)	E240K	probably damaging	Het
Dlg1	T	G	16: 31,606,923 (GRCm39)	Y220*	probably null	Het
Dnah7a	T	C	1: 53,557,886 (GRCm39)	Y2176C	probably damaging	Het
Dnai1	T	C	4: 41,630,055 (GRCm39)	I488T	probably benign	Het
Dock1	G	T	7: 134,348,683 (GRCm39)	C299F	possibly damaging	Het
Ebi3	C	T	17: 56,260,997 (GRCm39)	T59M	probably benign	Het
Esrp1	G	A	4: 11,367,153 (GRCm39)	S160F	probably benign	Het
Evi5l	A	G	8: 4,253,536 (GRCm39)	D471G	probably benign	Het
Farp2	T	C	1: 93,504,246 (GRCm39)	F341S	probably damaging	Het
Fbn1	A	G	2: 125,143,798 (GRCm39)	V2777A	probably benign	Het
Gm3336	A	G	8: 71,173,176 (GRCm39)	T63A	unknown	Het
Gm9767	A	G	10: 25,954,681 (GRCm39)	T78A	unknown	Het
H2-T5	T	G	17: 36,478,445 (GRCm39)	T168P	probably damaging	Het
Habp4	T	A	13: 64,323,860 (GRCm39)	M261K	probably benign	Het
Herc2	A	G	7: 55,814,992 (GRCm39)	T2744A	probably benign	Het
Hlx	A	G	1: 184,464,223 (GRCm39)	V39A	probably benign	Het
Ifi204	G	A	1: 173,587,772 (GRCm39)	T129I	possibly damaging	Het
Itfg1	A	G	8: 86,452,197 (GRCm39)	I534T	probably damaging	Het
Klhl33	A	T	14: 51,128,962 (GRCm39)	C496S	probably benign	Het
Lamb1	T	A	12: 31,350,214 (GRCm39)	V713D	possibly damaging	Het
Mon2	G	T	10: 122,852,213 (GRCm39)	H1052Q	probably damaging	Het
Ndst2	T	C	14: 20,778,478 (GRCm39)		probably null	Het
Nphp1	A	T	2: 127,587,829 (GRCm39)	M582K	probably damaging	Het
Nt5el	C	T	13: 105,256,482 (GRCm39)	T517I	probably benign	Het
Ogfr	AGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGAGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAAGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGGGGCCAGAG	AGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGAGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAAGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGGGGCCAGAG	2: 180,236,850 (GRCm39)		probably benign	Het
Or2w3b	A	G	11: 58,623,532 (GRCm39)	V153A	possibly damaging	Het
Or8b47	T	A	9: 38,435,239 (GRCm39)	D70E	probably damaging	Het
Padi2	A	T	4: 140,659,403 (GRCm39)	H236L	probably benign	Het
Pira2	A	T	7: 3,844,696 (GRCm39)	F445Y	probably benign	Het
Psenen	T	C	7: 30,261,503 (GRCm39)	I75V	probably benign	Het
Pycr1	A	T	11: 120,533,746 (GRCm39)	M37K	probably benign	Het
Rpl4	T	A	9: 64,085,212 (GRCm39)	N317K	probably damaging	Het
Scart2	T	A	7: 139,876,806 (GRCm39)	D732E	probably damaging	Het
Scn8a	T	A	15: 100,914,843 (GRCm39)		probably null	Het
Sdk1	A	G	5: 142,113,602 (GRCm39)	T1550A	probably damaging	Het
Shisa6	G	T	11: 66,265,990 (GRCm39)	T246K		Het
Sis	A	T	3: 72,844,294 (GRCm39)		probably null	Het
Slc22a14	A	C	9: 118,999,704 (GRCm39)	S496A	probably benign	Het
Slc8a3	G	A	12: 81,361,767 (GRCm39)	R351C	probably damaging	Het
Surf2	A	G	2: 26,809,288 (GRCm39)	K202R	probably benign	Het
Tnxb	T	A	17: 34,935,984 (GRCm39)		probably null	Het
Ugt2b36	T	A	5: 87,239,983 (GRCm39)	N134I	probably damaging	Het
Wdr97	T	C	15: 76,245,687 (GRCm39)	V1308A		Het
Xpr1	G	A	1: 155,188,641 (GRCm39)	A333V	possibly damaging	Het
Zfp408	A	T	2: 91,476,776 (GRCm39)	M126K	probably benign	Het
Zfy2	T	C	Y: 2,116,263 (GRCm39)	Q259R	probably benign	Het

Other mutations in Glcci1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01936:Glcci1	APN	6	8,579,596 (GRCm39)	missense	probably damaging	0.99
IGL02349:Glcci1	APN	6	8,558,581 (GRCm39)	missense	probably damaging	1.00
IGL02877:Glcci1	APN	6	8,582,757 (GRCm39)	missense	probably damaging	1.00
IGL03291:Glcci1	APN	6	8,579,678 (GRCm39)	missense	probably damaging	1.00
R1084:Glcci1	UTSW	6	8,573,221 (GRCm39)	nonsense	probably null
R1289:Glcci1	UTSW	6	8,593,088 (GRCm39)	missense	possibly damaging	0.70
R1466:Glcci1	UTSW	6	8,537,964 (GRCm39)	missense	probably damaging	1.00
R1466:Glcci1	UTSW	6	8,537,964 (GRCm39)	missense	probably damaging	1.00
R1539:Glcci1	UTSW	6	8,591,620 (GRCm39)	missense	probably damaging	1.00
R1584:Glcci1	UTSW	6	8,537,964 (GRCm39)	missense	probably damaging	1.00
R1873:Glcci1	UTSW	6	8,537,837 (GRCm39)	missense	probably benign	0.06
R1982:Glcci1	UTSW	6	8,592,980 (GRCm39)	missense	probably damaging	1.00
R2043:Glcci1	UTSW	6	8,582,590 (GRCm39)	missense	probably damaging	1.00
R2070:Glcci1	UTSW	6	8,558,566 (GRCm39)	missense	probably damaging	1.00
R4834:Glcci1	UTSW	6	8,582,601 (GRCm39)	nonsense	probably null
R5166:Glcci1	UTSW	6	8,537,854 (GRCm39)	missense	probably benign	0.23
R5390:Glcci1	UTSW	6	8,537,835 (GRCm39)	missense	probably benign	0.01
R6351:Glcci1	UTSW	6	8,573,203 (GRCm39)	nonsense	probably null
R8171:Glcci1	UTSW	6	8,593,167 (GRCm39)	missense	probably benign	0.00
R8292:Glcci1	UTSW	6	8,558,549 (GRCm39)	missense	probably damaging	1.00
R9186:Glcci1	UTSW	6	8,537,826 (GRCm39)	missense	possibly damaging	0.63
R9745:Glcci1	UTSW	6	8,573,278 (GRCm39)	missense	probably benign	0.11
X0065:Glcci1	UTSW	6	8,591,636 (GRCm39)	nonsense	probably null
Z1176:Glcci1	UTSW	6	8,582,674 (GRCm39)	missense	possibly damaging	0.72

Predicted Primers

PCR Primer
(F):5'- GCAGAAATGAAGCATTTGTTCC -3'
(R):5'- TGAAGGTAAAGCTTTCCCCTTAG -3'

Sequencing Primer
(F):5'- CAGTTGTCTCAGTCATAACT -3'
(R):5'- GGTAAAGCTTTCCCCTTAGTAATAC -3'

Posted On

2020-09-15