Incidental Mutation 'R8512:Ckmt1'
| ID |
655919 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ckmt1
|
| Ensembl Gene |
ENSMUSG00000000308 |
| Gene Name |
creatine kinase, mitochondrial 1, ubiquitous |
| Synonyms |
Mt-CK, mi-CK, UbCKmit |
| MMRRC Submission |
067846-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.304)
|
| Stock # |
R8512 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
121188257-121194218 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 121191689 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Serine
at position 286
(R286S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000000317
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000000317]
[ENSMUST00000038389]
[ENSMUST00000078222]
[ENSMUST00000125221]
[ENSMUST00000125812]
[ENSMUST00000126130]
[ENSMUST00000128612]
[ENSMUST00000129130]
[ENSMUST00000150271]
|
| AlphaFold |
P30275 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000000317
AA Change: R286S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000000317
Gene: ENSMUSG00000000308
AA Change: R286S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
Pfam:ATP-gua_PtransN
|
58 |
133 |
5.8e-34 |
PFAM |
|
Pfam:ATP-gua_Ptrans
|
154 |
401 |
4.5e-98 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000038389
|
| SMART Domains |
Protein: ENSMUSP00000039378
Gene: ENSMUSG00000033498
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
low complexity region
|
74 |
87 |
N/A |
INTRINSIC |
|
low complexity region
|
108 |
119 |
N/A |
INTRINSIC |
|
low complexity region
|
132 |
161 |
N/A |
INTRINSIC |
|
low complexity region
|
277 |
291 |
N/A |
INTRINSIC |
|
low complexity region
|
376 |
425 |
N/A |
INTRINSIC |
|
low complexity region
|
610 |
635 |
N/A |
INTRINSIC |
|
low complexity region
|
656 |
677 |
N/A |
INTRINSIC |
|
low complexity region
|
728 |
746 |
N/A |
INTRINSIC |
|
low complexity region
|
898 |
921 |
N/A |
INTRINSIC |
|
low complexity region
|
1168 |
1194 |
N/A |
INTRINSIC |
|
low complexity region
|
1287 |
1302 |
N/A |
INTRINSIC |
|
low complexity region
|
1560 |
1580 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000078222
AA Change: R286S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000077349
Gene: ENSMUSG00000000308
AA Change: R286S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
Pfam:ATP-gua_PtransN
|
55 |
134 |
1.2e-37 |
PFAM |
|
Pfam:ATP-gua_Ptrans
|
154 |
401 |
2e-105 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000125221
|
| SMART Domains |
Protein: ENSMUSP00000121930
Gene: ENSMUSG00000000308
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
Pfam:ATP-gua_PtransN
|
55 |
117 |
5.9e-27 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000125812
|
| SMART Domains |
Protein: ENSMUSP00000115501
Gene: ENSMUSG00000000308
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
Pfam:ATP-gua_PtransN
|
55 |
134 |
9.7e-39 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000126130
|
| SMART Domains |
Protein: ENSMUSP00000117463
Gene: ENSMUSG00000000308
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
low complexity region
|
39 |
54 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000128612
|
| SMART Domains |
Protein: ENSMUSP00000115610
Gene: ENSMUSG00000000308
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
low complexity region
|
47 |
63 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000129130
|
| SMART Domains |
Protein: ENSMUSP00000123130
Gene: ENSMUSG00000000308
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
Pfam:ATP-gua_PtransN
|
86 |
165 |
5.7e-40 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000150271
|
| SMART Domains |
Protein: ENSMUSP00000120507
Gene: ENSMUSG00000000308
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
32 |
N/A |
INTRINSIC |
|
Pfam:ATP-gua_PtransN
|
55 |
134 |
3.3e-38 |
PFAM |
|
Pfam:ATP-gua_Ptrans
|
154 |
251 |
3.8e-34 |
PFAM |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.3%
|
| Validation Efficiency |
|
| MGI Phenotype |
PHENOTYPE: Mice homozygous for a knock-out allele have no visual or motor impairments but display diminished open field habituation and slower spatial learning acquisition in the Morris water maze task as well as a reduced acoustic startle response, higher threshold, and lack of prepulse inhibition. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 50 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adgre4 |
T |
C |
17: 56,125,760 (GRCm39) |
|
probably null |
Het |
| Akap13 |
T |
C |
7: 75,260,834 (GRCm39) |
S350P |
probably damaging |
Het |
| Celsr2 |
A |
G |
3: 108,321,154 (GRCm39) |
F553L |
probably damaging |
Het |
| Ces3a |
A |
T |
8: 105,784,661 (GRCm39) |
T548S |
probably benign |
Het |
| Chtf8 |
G |
A |
8: 107,612,066 (GRCm39) |
T291I |
probably benign |
Het |
| Dnajb2 |
C |
T |
1: 75,218,075 (GRCm39) |
R191W |
|
Het |
| Dtnbp1 |
G |
T |
13: 45,075,867 (GRCm39) |
A292E |
probably benign |
Het |
| Esrrg |
T |
G |
1: 187,775,777 (GRCm39) |
Y101* |
probably null |
Het |
| Etaa1 |
G |
A |
11: 17,897,442 (GRCm39) |
S225L |
probably damaging |
Het |
| Evi5l |
A |
G |
8: 4,243,121 (GRCm39) |
Y335C |
probably benign |
Het |
| Fcho2 |
T |
C |
13: 98,891,730 (GRCm39) |
D344G |
possibly damaging |
Het |
| Ggnbp2 |
C |
T |
11: 84,728,815 (GRCm39) |
|
probably null |
Het |
| Gsdmc2 |
C |
T |
15: 63,706,864 (GRCm39) |
V101I |
probably null |
Het |
| Gsdmc4 |
A |
G |
15: 63,763,808 (GRCm39) |
C430R |
probably damaging |
Het |
| Irak4 |
A |
C |
15: 94,464,659 (GRCm39) |
I410L |
probably benign |
Het |
| Kirrel1 |
A |
G |
3: 86,995,534 (GRCm39) |
V436A |
probably benign |
Het |
| Lrrc30 |
T |
A |
17: 67,938,947 (GRCm39) |
Q211L |
probably damaging |
Het |
| Map4k1 |
C |
T |
7: 28,695,583 (GRCm39) |
H512Y |
possibly damaging |
Het |
| Matn3 |
T |
A |
12: 9,011,183 (GRCm39) |
S365T |
probably benign |
Het |
| Msantd2 |
T |
C |
9: 37,434,231 (GRCm39) |
I358T |
possibly damaging |
Het |
| Msantd5 |
T |
A |
11: 51,125,487 (GRCm39) |
S137T |
probably benign |
Het |
| Msx3 |
G |
T |
7: 139,628,884 (GRCm39) |
A10E |
probably benign |
Het |
| Muc16 |
T |
C |
9: 18,549,488 (GRCm39) |
T5602A |
probably benign |
Het |
| Myh2 |
T |
C |
11: 67,081,187 (GRCm39) |
S1268P |
probably benign |
Het |
| Mynn |
C |
T |
3: 30,670,798 (GRCm39) |
P557S |
probably damaging |
Het |
| Naglu |
T |
C |
11: 100,961,168 (GRCm39) |
V73A |
probably benign |
Het |
| Ncor1 |
AGCTGCTGCTGCTGCTGCTGCTGCTG |
AGCTGCTGCTGCTGCTGCTGCTG |
11: 62,324,437 (GRCm39) |
|
probably benign |
Het |
| Or10al3 |
T |
A |
17: 38,012,071 (GRCm39) |
F170Y |
probably damaging |
Het |
| Or6c75 |
T |
A |
10: 129,337,496 (GRCm39) |
S240T |
probably damaging |
Het |
| P2rx3 |
C |
T |
2: 84,854,755 (GRCm39) |
E100K |
probably damaging |
Het |
| Pnisr |
C |
T |
4: 21,870,372 (GRCm39) |
Q375* |
probably null |
Het |
| Psmb9 |
C |
T |
17: 34,402,602 (GRCm39) |
C126Y |
probably benign |
Het |
| Ptprt |
A |
G |
2: 161,400,783 (GRCm39) |
F1085L |
probably benign |
Het |
| Rev3l |
A |
G |
10: 39,697,534 (GRCm39) |
Y677C |
probably damaging |
Het |
| Rftn2 |
G |
A |
1: 55,253,324 (GRCm39) |
P93L |
probably damaging |
Het |
| Rtl1 |
T |
A |
12: 109,561,051 (GRCm39) |
M263L |
unknown |
Het |
| Sec24c |
T |
C |
14: 20,740,920 (GRCm39) |
V722A |
possibly damaging |
Het |
| Slc2a7 |
T |
C |
4: 150,247,752 (GRCm39) |
L384P |
probably benign |
Het |
| Slc6a11 |
T |
C |
6: 114,215,402 (GRCm39) |
L434P |
probably damaging |
Het |
| Sptb |
T |
C |
12: 76,648,826 (GRCm39) |
E1869G |
possibly damaging |
Het |
| Susd2 |
G |
A |
10: 75,475,485 (GRCm39) |
T473I |
probably benign |
Het |
| Synpo |
C |
T |
18: 60,735,483 (GRCm39) |
R821H |
probably damaging |
Het |
| Tdrd9 |
G |
A |
12: 112,012,627 (GRCm39) |
V1184I |
probably benign |
Het |
| Tle1 |
T |
G |
4: 72,040,670 (GRCm39) |
K630Q |
possibly damaging |
Het |
| Traf3 |
A |
T |
12: 111,228,426 (GRCm39) |
T546S |
probably benign |
Het |
| Ttc17 |
G |
A |
2: 94,202,108 (GRCm39) |
T398M |
probably damaging |
Het |
| Ttn |
G |
C |
2: 76,698,692 (GRCm39) |
N136K |
|
Het |
| Ttn |
T |
C |
2: 76,747,111 (GRCm39) |
E4646G |
probably benign |
Het |
| Xbp1 |
T |
C |
11: 5,474,266 (GRCm39) |
S156P |
probably damaging |
Het |
| Yipf7 |
C |
T |
5: 69,674,387 (GRCm39) |
V253I |
probably benign |
Het |
|
| Other mutations in Ckmt1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01135:Ckmt1
|
APN |
2 |
121,191,631 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01141:Ckmt1
|
APN |
2 |
121,193,474 (GRCm39) |
missense |
probably benign |
0.07 |
|
IGL01403:Ckmt1
|
APN |
2 |
121,193,447 (GRCm39) |
unclassified |
probably benign |
|
|
IGL01971:Ckmt1
|
APN |
2 |
121,194,064 (GRCm39) |
missense |
probably benign |
0.41 |
|
IGL02037:Ckmt1
|
APN |
2 |
121,191,643 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02750:Ckmt1
|
APN |
2 |
121,194,096 (GRCm39) |
unclassified |
probably benign |
|
|
IGL03303:Ckmt1
|
APN |
2 |
121,190,486 (GRCm39) |
missense |
probably benign |
|
|
R0157:Ckmt1
|
UTSW |
2 |
121,193,522 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R0331:Ckmt1
|
UTSW |
2 |
121,193,337 (GRCm39) |
splice site |
probably null |
|
|
R1590:Ckmt1
|
UTSW |
2 |
121,194,003 (GRCm39) |
missense |
possibly damaging |
0.96 |
|
R1640:Ckmt1
|
UTSW |
2 |
121,190,198 (GRCm39) |
splice site |
probably null |
|
|
R1853:Ckmt1
|
UTSW |
2 |
121,191,131 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4726:Ckmt1
|
UTSW |
2 |
121,191,712 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4788:Ckmt1
|
UTSW |
2 |
121,190,427 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R5632:Ckmt1
|
UTSW |
2 |
121,191,073 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5633:Ckmt1
|
UTSW |
2 |
121,194,110 (GRCm39) |
unclassified |
probably benign |
|
|
R5960:Ckmt1
|
UTSW |
2 |
121,194,058 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6123:Ckmt1
|
UTSW |
2 |
121,194,060 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6673:Ckmt1
|
UTSW |
2 |
121,190,151 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7220:Ckmt1
|
UTSW |
2 |
121,189,374 (GRCm39) |
missense |
possibly damaging |
0.96 |
|
R8100:Ckmt1
|
UTSW |
2 |
121,191,258 (GRCm39) |
missense |
probably benign |
|
|
R8359:Ckmt1
|
UTSW |
2 |
121,193,531 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8508:Ckmt1
|
UTSW |
2 |
121,193,172 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R8821:Ckmt1
|
UTSW |
2 |
121,191,302 (GRCm39) |
intron |
probably benign |
|
|
R9181:Ckmt1
|
UTSW |
2 |
121,189,870 (GRCm39) |
intron |
probably benign |
|
|
X0067:Ckmt1
|
UTSW |
2 |
121,191,448 (GRCm39) |
nonsense |
probably null |
|
|
Z1177:Ckmt1
|
UTSW |
2 |
121,190,056 (GRCm39) |
missense |
probably damaging |
0.98 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATCTGGTATGGAGCCAACAC -3'
(R):5'- CCTGGTTTGTAACTATTATCCTAGC -3'
Sequencing Primer
(F):5'- TCCCCCTTGTATGTGCAAAG -3'
(R):5'- ATCCTAGCATGATAATGACCCTTTC -3'
|
| Posted On |
2020-10-20 |
Incidental Mutation