Mutagenetix > Incidental Mutation

Incidental Mutation 'R8958:Trim46'

682146

Institutional Source

Beutler Lab

Gene Symbol

Trim46

Ensembl Gene

ENSMUSG00000042766

Gene Name

tripartite motif-containing 46

Synonyms

TRIFIC

MMRRC Submission

068794-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.695) question?

Stock #

R8958 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

89141484-89153616 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 89143760 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 556 (D556G)

Ref Sequence

ENSEMBL: ENSMUSP00000103088 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041022] [ENSMUST00000041142] [ENSMUST00000090924] [ENSMUST00000107464] [ENSMUST00000143637]

AlphaFold

Q7TNM2

Predicted Effect

probably damaging
Transcript: ENSMUST00000041022
AA Change: D579G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000036053
Gene: ENSMUSG00000042766
AA Change: D579G

Domain	Start	End	E-Value	Type
RING	33	133	1.92e-6	SMART
BBOX	222	263	9.59e-7	SMART
Blast:BBC	271	395	3e-13	BLAST
FN3	430	515	2.03e-2	SMART
low complexity region	561	571	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000041142

SMART Domains

Protein: ENSMUSP00000041963
Gene: ENSMUSG00000042784

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
low complexity region	30	46	N/A	INTRINSIC
internal_repeat_2	48	106	4.93e-6	PROSPERO
internal_repeat_1	79	151	3.46e-38	PROSPERO
low complexity region	153	181	N/A	INTRINSIC
internal_repeat_1	183	254	3.46e-38	PROSPERO
internal_repeat_2	192	259	4.93e-6	PROSPERO
low complexity region	277	292	N/A	INTRINSIC
low complexity region	296	307	N/A	INTRINSIC
low complexity region	370	381	N/A	INTRINSIC
low complexity region	382	400	N/A	INTRINSIC
SEA	412	528	6.2e-43	SMART
low complexity region	537	552	N/A	INTRINSIC
Blast:SEA	557	624	2e-36	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000090924

SMART Domains

Protein: ENSMUSP00000088442
Gene: ENSMUSG00000042766

Domain	Start	End	E-Value	Type
RING	20	120	1.92e-6	SMART
BBOX	209	250	9.59e-7	SMART
Blast:BBC	258	382	8e-13	BLAST
FN3	417	502	2.03e-2	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000107464
AA Change: D556G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000103088
Gene: ENSMUSG00000042766
AA Change: D556G

Domain	Start	End	E-Value	Type
RING	10	110	1.92e-6	SMART
BBOX	199	240	9.59e-7	SMART
Blast:BBC	248	372	2e-13	BLAST
FN3	407	492	2.03e-2	SMART
low complexity region	538	548	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000143637

SMART Domains

Protein: ENSMUSP00000119270
Gene: ENSMUSG00000042766

Domain	Start	End	E-Value	Type
RING	33	133	1.92e-6	SMART
BBOX	222	263	9.59e-7	SMART
Blast:BBC	270	391	4e-11	BLAST

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 97.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam17	A	T	12: 21,399,934 (GRCm39)	N157K	possibly damaging	Het
Adck2	T	C	6: 39,560,848 (GRCm39)	V412A	probably benign	Het
Adgrb3	C	T	1: 25,865,190 (GRCm39)	V11I	possibly damaging	Het
Arhgef17	T	C	7: 100,579,019 (GRCm39)	D643G	probably damaging	Het
Arvcf	A	G	16: 18,221,376 (GRCm39)	Q597R	probably damaging	Het
Brdt	T	C	5: 107,525,877 (GRCm39)	V910A	probably benign	Het
Cachd1	A	G	4: 100,851,283 (GRCm39)	D1167G	probably benign	Het
Ccdc187	A	C	2: 26,165,577 (GRCm39)	S860A	probably benign	Het
Ccdc28a	T	C	10: 18,089,926 (GRCm39)	I113M	probably benign	Het
Cdc5l	T	C	17: 45,704,127 (GRCm39)	N699S	probably benign	Het
Cenpf	A	T	1: 189,385,350 (GRCm39)	I2310K	possibly damaging	Het
Ch25h	A	T	19: 34,452,414 (GRCm39)	I38N	probably benign	Het
Chrdl2	C	A	7: 99,670,129 (GRCm39)	P84Q	probably damaging	Het
Cltc	A	T	11: 86,586,403 (GRCm39)	Y1673N	possibly damaging	Het
Cr1l	C	G	1: 194,812,243 (GRCm39)	G27R	probably damaging	Het
Crebbp	G	A	16: 4,031,172 (GRCm39)		probably benign	Het
Dync1h1	G	A	12: 110,586,805 (GRCm39)	E929K	probably benign	Het
E2f7	C	A	10: 110,601,615 (GRCm39)	P324Q	probably damaging	Het
Eif3b	A	G	5: 140,411,194 (GRCm39)	D215G	probably benign	Het
Ephb1	A	G	9: 102,072,614 (GRCm39)	I55T	probably damaging	Het
Fbxw14	A	T	9: 109,107,810 (GRCm39)	L188Q	probably damaging	Het
Foxg1	T	C	12: 49,431,944 (GRCm39)	S226P	probably damaging	Het
Gbe1	T	C	16: 70,275,210 (GRCm39)	F337L	probably damaging	Het
Glg1	A	T	8: 111,899,116 (GRCm39)	C716*	probably null	Het
Gp1ba	C	G	11: 70,531,730 (GRCm39)		probably benign	Het
Grm7	C	T	6: 111,472,783 (GRCm39)	S36L	probably damaging	Het
H2-M5	T	A	17: 37,299,520 (GRCm39)	I167F	probably damaging	Het
H3c6	T	C	13: 23,746,421 (GRCm39)	H40R	possibly damaging	Het
Hycc1	A	G	5: 24,169,934 (GRCm39)	C472R	probably benign	Het
Il18rap	C	T	1: 40,582,177 (GRCm39)	T366M	probably benign	Het
Ino80	C	T	2: 119,213,862 (GRCm39)	R1236H	probably damaging	Het
Ism1	T	A	2: 139,573,995 (GRCm39)	I115N	possibly damaging	Het
Kdm4a	A	G	4: 117,999,573 (GRCm39)	S950P	probably benign	Het
Lama5	T	C	2: 179,835,592 (GRCm39)	T1254A	probably benign	Het
Lipo2	T	A	19: 33,698,361 (GRCm39)	K339*	probably null	Het
Lrrc7	T	C	3: 157,946,138 (GRCm39)	K187R	probably benign	Het
Mkrn2os	G	C	6: 115,562,317 (GRCm39)	S215R	probably benign	Het
Myzap	G	T	9: 71,457,485 (GRCm39)	D303E	possibly damaging	Het
Naa11	T	C	5: 97,540,084 (GRCm39)	N25D	probably damaging	Het
Naip5	T	A	13: 100,354,117 (GRCm39)	K1149*	probably null	Het
Obscn	C	T	11: 58,964,158 (GRCm39)	V3083M	probably damaging	Het
Or10d1	T	C	9: 39,484,091 (GRCm39)	T155A	probably benign	Het
Or4k48	T	C	2: 111,476,070 (GRCm39)	T91A	possibly damaging	Het
Parn	T	A	16: 13,466,322 (GRCm39)	E241D	possibly damaging	Het
Pax1	T	A	2: 147,210,517 (GRCm39)		probably null	Het
Pclo	A	T	5: 14,725,369 (GRCm39)	E1409V	unknown	Het
Pclo	A	G	5: 14,763,056 (GRCm39)	Y3843C	unknown	Het
Ppp2r3d	A	T	9: 101,088,634 (GRCm39)	M563K	probably benign	Het
Prdm1	T	G	10: 44,316,729 (GRCm39)	K623Q	probably damaging	Het
Ptpn13	T	C	5: 103,698,973 (GRCm39)	V1152A	probably benign	Het
Ptx3	G	A	3: 66,128,391 (GRCm39)	A151T	probably benign	Het
Rab11fip1	T	C	8: 27,644,940 (GRCm39)	S282G	possibly damaging	Het
Ros1	G	T	10: 51,972,190 (GRCm39)	N1641K	probably damaging	Het
Syne1	T	C	10: 5,181,768 (GRCm39)	K4189R	probably benign	Het
Tcf3	T	C	10: 80,246,091 (GRCm39)	K611E	probably damaging	Het
Tmem215	A	G	4: 40,474,376 (GRCm39)	Q151R	probably benign	Het
Trappc8	T	C	18: 21,003,667 (GRCm39)	I254V	probably benign	Het
Wdr97	A	T	15: 76,245,694 (GRCm39)	E1310D		Het
Zfp513	C	A	5: 31,356,825 (GRCm39)	R487L	probably damaging	Het
Zmpste24	C	A	4: 120,944,508 (GRCm39)	E97*	probably null	Het

Other mutations in Trim46

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00945:Trim46	APN	3	89,151,725 (GRCm39)	unclassified	probably benign
IGL02082:Trim46	APN	3	89,146,307 (GRCm39)	missense	probably benign	0.03
IGL02405:Trim46	APN	3	89,149,792 (GRCm39)	missense	probably benign	0.09
hippocampus	UTSW	3	89,153,020 (GRCm39)	critical splice donor site	probably null
R0107:Trim46	UTSW	3	89,143,640 (GRCm39)	missense	probably damaging	1.00
R0295:Trim46	UTSW	3	89,152,420 (GRCm39)	unclassified	probably benign
R0330:Trim46	UTSW	3	89,143,820 (GRCm39)	missense	probably damaging	1.00
R1303:Trim46	UTSW	3	89,149,515 (GRCm39)	missense	probably benign	0.03
R1436:Trim46	UTSW	3	89,150,968 (GRCm39)	missense	probably damaging	1.00
R1458:Trim46	UTSW	3	89,142,375 (GRCm39)	splice site	probably null
R1990:Trim46	UTSW	3	89,145,008 (GRCm39)	missense	probably damaging	1.00
R1991:Trim46	UTSW	3	89,145,008 (GRCm39)	missense	probably damaging	1.00
R1992:Trim46	UTSW	3	89,145,008 (GRCm39)	missense	probably damaging	1.00
R2102:Trim46	UTSW	3	89,142,504 (GRCm39)	missense	probably damaging	1.00
R3729:Trim46	UTSW	3	89,142,256 (GRCm39)	missense	probably benign
R3730:Trim46	UTSW	3	89,142,256 (GRCm39)	missense	probably benign
R4603:Trim46	UTSW	3	89,150,958 (GRCm39)	missense	probably benign	0.11
R6648:Trim46	UTSW	3	89,142,549 (GRCm39)	missense	possibly damaging	0.88
R6962:Trim46	UTSW	3	89,146,303 (GRCm39)	missense	probably damaging	1.00
R7761:Trim46	UTSW	3	89,149,565 (GRCm39)	missense	probably damaging	1.00
R7905:Trim46	UTSW	3	89,151,633 (GRCm39)	missense	probably damaging	1.00
R8228:Trim46	UTSW	3	89,142,255 (GRCm39)	missense	probably benign
R8307:Trim46	UTSW	3	89,151,223 (GRCm39)	missense	probably benign	0.12
R8509:Trim46	UTSW	3	89,153,020 (GRCm39)	critical splice donor site	probably null
R8992:Trim46	UTSW	3	89,143,692 (GRCm39)	missense	probably damaging	1.00
R9208:Trim46	UTSW	3	89,142,466 (GRCm39)	missense	possibly damaging	0.73
R9786:Trim46	UTSW	3	89,142,399 (GRCm39)	missense	probably damaging	1.00
X0021:Trim46	UTSW	3	89,151,016 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAAGTCCCTTCTGCTGAGCC -3'
(R):5'- ACCAGTCTGTCCCTGAAGTC -3'

Sequencing Primer
(F):5'- AAAGTCTGGAGCCCCGTCAC -3'
(R):5'- AGTCTGTCCCTGAAGTCCTTCC -3'

Posted On

2021-08-31