Incidental Mutation 'R1326:Slc27a2'
| ID |
157208 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Slc27a2
|
| Ensembl Gene |
ENSMUSG00000027359 |
| Gene Name |
solute carrier family 27 (fatty acid transporter), member 2 |
| Synonyms |
Vlac, VLCS, FATP2, Vlacs, FATP2, ACSVL1 |
| MMRRC Submission |
039392-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R1326 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
126394944-126430163 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 126406690 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Asparagine
at position 125
(Y125N)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000117145
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000061491]
[ENSMUST00000141482]
|
| AlphaFold |
O35488 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000061491
AA Change: Y261N
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000057595
Gene: ENSMUSG00000027359
AA Change: Y261N
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
5 |
27 |
N/A |
INTRINSIC |
|
low complexity region
|
41 |
53 |
N/A |
INTRINSIC |
|
Pfam:AMP-binding
|
59 |
488 |
1.4e-71 |
PFAM |
|
Pfam:AMP-binding_C
|
496 |
572 |
1.9e-9 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000126249
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000141482
AA Change: Y125N
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000117145
Gene: ENSMUSG00000027359
AA Change: Y125N
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:AMP-binding
|
7 |
256 |
6.2e-38 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000150947
|
| Coding Region Coverage |
- 1x: 98.8%
- 3x: 97.8%
- 10x: 94.7%
- 20x: 87.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an isozyme of long-chain fatty-acid-coenzyme A ligase family. Although differing in substrate specificity, subcellular localization, and tissue distribution, all isozymes of this family convert free long-chain fatty acids into fatty acyl-CoA esters, and thereby play a key role in lipid biosynthesis and fatty acid degradation. This isozyme activates long-chain, branched-chain and very-long-chain fatty acids containing 22 or more carbons to their CoA derivatives. It is expressed primarily in liver and kidney, and is present in both endoplasmic reticulum and peroxisomes, but not in mitochondria. Its decreased peroxisomal enzyme activity is in part responsible for the biochemical pathology in X-linked adrenoleukodystrophy. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2009]
PHENOTYPE: Homozygous mutant mice are viable and show no gross morphological abnormalities. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(5) : Targeted, knock-out(2) Targeted, other(2) Gene trapped(1)
|
| Other mutations in this stock |
Total: 24 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Arhgap5 |
G |
A |
12: 52,565,153 (GRCm39) |
S708N |
possibly damaging |
Het |
| Armc3 |
T |
C |
2: 19,314,935 (GRCm39) |
*882Q |
probably null |
Het |
| Atp13a3 |
G |
A |
16: 30,171,128 (GRCm39) |
L306F |
probably damaging |
Het |
| Cyp2d9 |
T |
C |
15: 82,339,357 (GRCm39) |
I130T |
possibly damaging |
Het |
| Ect2l |
C |
T |
10: 18,041,290 (GRCm39) |
R296H |
probably benign |
Het |
| Eomes |
C |
T |
9: 118,313,565 (GRCm39) |
Q518* |
probably null |
Het |
| Errfi1 |
T |
C |
4: 150,949,621 (GRCm39) |
V6A |
possibly damaging |
Het |
| Fezf2 |
T |
C |
14: 12,342,644 (GRCm38) |
N407S |
probably benign |
Het |
| Fpgs |
T |
C |
2: 32,582,592 (GRCm39) |
|
probably null |
Het |
| Fsbp |
A |
G |
4: 11,579,891 (GRCm39) |
Y53C |
probably damaging |
Het |
| Hspd1 |
T |
C |
1: 55,119,418 (GRCm39) |
|
probably null |
Het |
| Ifna7 |
A |
T |
4: 88,734,931 (GRCm39) |
E156V |
possibly damaging |
Het |
| Map1a |
C |
T |
2: 121,136,671 (GRCm39) |
Q2258* |
probably null |
Het |
| Mier2 |
A |
G |
10: 79,380,543 (GRCm39) |
F289S |
probably damaging |
Het |
| Mmp16 |
A |
G |
4: 18,054,517 (GRCm39) |
N341S |
possibly damaging |
Het |
| Moxd2 |
T |
C |
6: 40,857,288 (GRCm39) |
T491A |
probably benign |
Het |
| Narf |
T |
A |
11: 121,133,379 (GRCm39) |
L60Q |
probably damaging |
Het |
| Pa2g4 |
T |
C |
10: 128,395,142 (GRCm39) |
D341G |
probably benign |
Het |
| Parp1 |
T |
A |
1: 180,428,023 (GRCm39) |
V991D |
probably damaging |
Het |
| Rin2 |
C |
T |
2: 145,702,366 (GRCm39) |
T354I |
probably benign |
Het |
| Slc1a4 |
A |
G |
11: 20,282,159 (GRCm39) |
L105P |
probably damaging |
Het |
| Sorl1 |
A |
G |
9: 41,943,092 (GRCm39) |
V928A |
probably benign |
Het |
| Spata31e2 |
G |
T |
1: 26,723,011 (GRCm39) |
P723H |
probably damaging |
Het |
| Usp31 |
G |
C |
7: 121,247,525 (GRCm39) |
S1306C |
probably damaging |
Het |
|
| Other mutations in Slc27a2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00420:Slc27a2
|
APN |
2 |
126,422,837 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01907:Slc27a2
|
APN |
2 |
126,429,794 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL02185:Slc27a2
|
APN |
2 |
126,409,736 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02363:Slc27a2
|
APN |
2 |
126,420,870 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
IGL02451:Slc27a2
|
APN |
2 |
126,420,912 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02486:Slc27a2
|
APN |
2 |
126,395,270 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL03217:Slc27a2
|
APN |
2 |
126,428,172 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
IGL03287:Slc27a2
|
APN |
2 |
126,395,312 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03291:Slc27a2
|
APN |
2 |
126,406,670 (GRCm39) |
missense |
probably benign |
0.14 |
|
baseboard
|
UTSW |
2 |
126,409,700 (GRCm39) |
missense |
probably damaging |
0.97 |
|
B6584:Slc27a2
|
UTSW |
2 |
126,403,562 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R0021:Slc27a2
|
UTSW |
2 |
126,409,806 (GRCm39) |
splice site |
probably benign |
|
|
R0647:Slc27a2
|
UTSW |
2 |
126,429,836 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1509:Slc27a2
|
UTSW |
2 |
126,395,234 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R1907:Slc27a2
|
UTSW |
2 |
126,428,262 (GRCm39) |
missense |
probably benign |
0.13 |
|
R2012:Slc27a2
|
UTSW |
2 |
126,395,535 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2217:Slc27a2
|
UTSW |
2 |
126,409,672 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3769:Slc27a2
|
UTSW |
2 |
126,409,718 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R3770:Slc27a2
|
UTSW |
2 |
126,409,718 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R5244:Slc27a2
|
UTSW |
2 |
126,420,775 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5459:Slc27a2
|
UTSW |
2 |
126,422,912 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5582:Slc27a2
|
UTSW |
2 |
126,406,610 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5606:Slc27a2
|
UTSW |
2 |
126,406,610 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5655:Slc27a2
|
UTSW |
2 |
126,420,859 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5680:Slc27a2
|
UTSW |
2 |
126,403,530 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5747:Slc27a2
|
UTSW |
2 |
126,406,658 (GRCm39) |
missense |
probably benign |
|
|
R6346:Slc27a2
|
UTSW |
2 |
126,429,800 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7042:Slc27a2
|
UTSW |
2 |
126,409,700 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7297:Slc27a2
|
UTSW |
2 |
126,420,866 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7323:Slc27a2
|
UTSW |
2 |
126,395,124 (GRCm39) |
missense |
probably benign |
0.38 |
|
R7391:Slc27a2
|
UTSW |
2 |
126,395,082 (GRCm39) |
missense |
unknown |
|
|
R8247:Slc27a2
|
UTSW |
2 |
126,395,515 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8836:Slc27a2
|
UTSW |
2 |
126,416,656 (GRCm39) |
missense |
|
|
|
R9192:Slc27a2
|
UTSW |
2 |
126,429,807 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9526:Slc27a2
|
UTSW |
2 |
126,429,846 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9599:Slc27a2
|
UTSW |
2 |
126,420,904 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9614:Slc27a2
|
UTSW |
2 |
126,409,736 (GRCm39) |
missense |
probably damaging |
0.99 |
|
RF008:Slc27a2
|
UTSW |
2 |
126,395,175 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
| Predicted Primers |
PCR Primer
(F):5'- TAGCATGGGAAAGGCCAACCTGAC -3'
(R):5'- TTCTGCCACGGGAGAGCTACTTAC -3'
Sequencing Primer
(F):5'- CCTGACTCACCGATGCC -3'
(R):5'- CTGGGTAAAGGCATACATCCTTTC -3'
|
| Posted On |
2014-02-18 |
Incidental Mutation