Mutagenetix > Incidental Mutation

Incidental Mutation 'R4516:Rab29'

332893

Institutional Source

Beutler Lab

Gene Symbol

Rab29

Ensembl Gene

ENSMUSG00000026433

Gene Name

RAB29, member RAS oncogene family

Synonyms

Rab7l1

MMRRC Submission

041760-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4516 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

131794962-131800625 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 131795469 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 27 (Y27F)

Ref Sequence

ENSEMBL: ENSMUSP00000137659 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027693] [ENSMUST00000112386] [ENSMUST00000125925]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000027693
AA Change: Y27F

PolyPhen 2 Score 0.732 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000027693
Gene: ENSMUSG00000026433
AA Change: Y27F

Domain	Start	End	E-Value	Type
RAB	8	176	2.25e-63	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112386
AA Change: Y27F

PolyPhen 2 Score 0.732 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000108005
Gene: ENSMUSG00000026433
AA Change: Y27F

Domain	Start	End	E-Value	Type
RAB	8	176	2.25e-63	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000125925
AA Change: Y27F

PolyPhen 2 Score 0.940 (Sensitivity: 0.80; Specificity: 0.94)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000187084

Meta Mutation Damage Score

0.1142

Coding Region Coverage

1x: 99.4%
3x: 98.5%
10x: 96.6%
20x: 92.9%

Validation Efficiency

86% (51/59)

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Bean1	T	C	8: 104,941,786 (GRCm39)	S211P	probably damaging	Het
Bltp1	T	C	3: 36,949,460 (GRCm39)	S369P	possibly damaging	Het
Camta1	A	G	4: 151,229,177 (GRCm39)	S552P	possibly damaging	Het
Cdh11	T	C	8: 103,400,594 (GRCm39)	T125A	possibly damaging	Het
Cdk5rap2	A	T	4: 70,194,952 (GRCm39)		probably null	Het
Cenpc1	A	G	5: 86,195,446 (GRCm39)	S108P	possibly damaging	Het
Cfap20dc	A	T	14: 8,536,609 (GRCm38)	D199E	probably damaging	Het
Cfap44	T	A	16: 44,294,227 (GRCm39)	Y224*	probably null	Het
Cfap46	G	A	7: 139,239,998 (GRCm39)		probably benign	Het
Cntrl	G	A	2: 35,017,993 (GRCm39)	V468I	probably benign	Het
Col6a6	C	T	9: 105,576,148 (GRCm39)	V2071I	possibly damaging	Het
Coq7	A	T	7: 118,109,130 (GRCm39)	L306Q	unknown	Het
D7Ertd443e	C	G	7: 133,895,057 (GRCm39)	Q591H	probably damaging	Het
Dchs1	C	T	7: 105,404,059 (GRCm39)	V2828M	probably damaging	Het
Dzank1	T	A	2: 144,352,042 (GRCm39)		probably benign	Het
Elmo1	C	T	13: 20,467,084 (GRCm39)	T235I	probably benign	Het
Elp3	A	T	14: 65,785,326 (GRCm39)	F492I	possibly damaging	Het
Espl1	A	G	15: 102,231,671 (GRCm39)	S90G	probably benign	Het
Fbxl20	T	C	11: 97,986,061 (GRCm39)		probably benign	Het
Gm10722	T	C	9: 3,000,937 (GRCm39)	C6R	probably benign	Het
Got1	T	C	19: 43,493,280 (GRCm39)	Y243C	probably damaging	Het
Hipk1	G	T	3: 103,657,688 (GRCm39)	H799N	probably damaging	Het
Kif21a	A	T	15: 90,855,345 (GRCm39)	M673K	probably benign	Het
Lama3	T	A	18: 12,628,415 (GRCm39)	D1502E	probably damaging	Het
Limk1	A	G	5: 134,705,640 (GRCm39)		probably benign	Het
Myo5b	A	G	18: 74,758,745 (GRCm39)	Y242C	probably damaging	Het
Naa12	G	A	18: 80,254,791 (GRCm39)	M28I	probably benign	Het
Ncbp1	T	C	4: 46,157,824 (GRCm39)	V354A	probably damaging	Het
Ncoa2	T	C	1: 13,217,130 (GRCm39)	D1380G	probably damaging	Het
Ntng1	A	G	3: 109,842,329 (GRCm39)	I148T	probably damaging	Het
Oas1d	A	T	5: 121,057,233 (GRCm39)	T280S	probably damaging	Het
Or1e29	C	T	11: 73,667,866 (GRCm39)	G96S	probably benign	Het
Or4c15b	T	A	2: 89,113,187 (GRCm39)	M118L	probably benign	Het
Pax7	T	G	4: 139,508,104 (GRCm39)	D307A	probably benign	Het
Pdxdc1	G	A	16: 13,656,210 (GRCm39)	Q621*	probably null	Het
Rab3gap2	G	A	1: 184,999,265 (GRCm39)	V991I	probably benign	Het
Ric1	A	G	19: 29,548,165 (GRCm39)	T278A	probably benign	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Slc47a1	T	C	11: 61,235,339 (GRCm39)	H498R	probably benign	Het
Spmip6	T	C	4: 41,517,200 (GRCm39)		probably benign	Het
Tas2r116	T	C	6: 132,833,113 (GRCm39)	L238P	probably damaging	Het
Tigd5	A	T	15: 75,782,364 (GRCm39)	R252*	probably null	Het
Tlr6	A	G	5: 65,112,247 (GRCm39)	F220S	possibly damaging	Het
Tmem106b	C	T	6: 13,075,098 (GRCm39)	T95I	probably damaging	Het
Ubqlnl	C	T	7: 103,798,925 (GRCm39)	V191M	probably benign	Het
Vmn1r174	A	G	7: 23,453,768 (GRCm39)	I145V	probably benign	Het
Vps26a	T	C	10: 62,304,124 (GRCm39)	M116V	probably damaging	Het

Other mutations in Rab29

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01539:Rab29	APN	1	131,798,445 (GRCm39)	missense	probably damaging	1.00
IGL02339:Rab29	APN	1	131,799,880 (GRCm39)	missense	probably benign	0.08
IGL02528:Rab29	APN	1	131,797,749 (GRCm39)	splice site	probably benign
R1728:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R1729:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R1730:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R1739:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R1762:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R1783:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R1784:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R1785:Rab29	UTSW	1	131,799,848 (GRCm39)	missense	probably benign
R4171:Rab29	UTSW	1	131,795,475 (GRCm39)	missense	probably benign	0.02
R4193:Rab29	UTSW	1	131,797,700 (GRCm39)	missense	possibly damaging	0.61
R4559:Rab29	UTSW	1	131,800,305 (GRCm39)	nonsense	probably null
R7739:Rab29	UTSW	1	131,799,923 (GRCm39)	missense	probably damaging	0.99
R9310:Rab29	UTSW	1	131,799,860 (GRCm39)	missense	probably damaging	0.98
R9483:Rab29	UTSW	1	131,795,508 (GRCm39)	missense	possibly damaging	0.63

Predicted Primers

PCR Primer
(F):5'- GGAGATGCCTGACTTCAATTGG -3'
(R):5'- TGCTCTCTGCGGTGAATAGTC -3'

Sequencing Primer
(F):5'- TTCAATTGGAAGAGAACCCGG -3'
(R):5'- TGAATAGTCCCCGGCTCAGAC -3'

Posted On

2015-08-18