Incidental Mutation 'IGL01944:Rap1gap'
ID181208
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Rap1gap
Ensembl Gene ENSMUSG00000041351
Gene NameRap1 GTPase-activating protein
Synonyms1300019I11Rik, 2310004O14Rik, Rap1ga1
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #IGL01944
Quality Score
Status
Chromosome4
Chromosomal Location137664726-137729861 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 137725620 bp
ZygosityHeterozygous
Amino Acid Change Serine to Proline at position 601 (S601P)
Ref Sequence ENSEMBL: ENSMUSP00000101461 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047243] [ENSMUST00000097837] [ENSMUST00000105835] [ENSMUST00000141306]
Predicted Effect probably damaging
Transcript: ENSMUST00000047243
AA Change: S601P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000042473
Gene: ENSMUSG00000041351
AA Change: S601P

DomainStartEndE-ValueType
GoLoco 59 81 4.94e-10 SMART
Pfam:Rap_GAP 274 461 1.4e-64 PFAM
low complexity region 485 495 N/A INTRINSIC
low complexity region 630 641 N/A INTRINSIC
low complexity region 680 695 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000097837
AA Change: S568P

PolyPhen 2 Score 0.751 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000095448
Gene: ENSMUSG00000041351
AA Change: S568P

DomainStartEndE-ValueType
low complexity region 4 16 N/A INTRINSIC
GoLoco 26 48 4.94e-10 SMART
Pfam:Rap_GAP 241 428 1.2e-64 PFAM
low complexity region 452 462 N/A INTRINSIC
low complexity region 597 608 N/A INTRINSIC
low complexity region 647 662 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000105835
AA Change: S601P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000101461
Gene: ENSMUSG00000041351
AA Change: S601P

DomainStartEndE-ValueType
GoLoco 59 81 4.94e-10 SMART
Pfam:Rap_GAP 274 455 4.5e-66 PFAM
low complexity region 485 495 N/A INTRINSIC
low complexity region 630 641 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123011
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123134
Predicted Effect possibly damaging
Transcript: ENSMUST00000141306
AA Change: S283P

PolyPhen 2 Score 0.891 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000122315
Gene: ENSMUSG00000041351
AA Change: S283P

DomainStartEndE-ValueType
Pfam:Rap_GAP 1 117 1.4e-32 PFAM
low complexity region 141 151 N/A INTRINSIC
low complexity region 312 323 N/A INTRINSIC
low complexity region 362 377 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000144059
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148054
Predicted Effect noncoding transcript
Transcript: ENSMUST00000151601
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a type of GTPase-activating-protein (GAP) that down-regulates the activity of the ras-related RAP1 protein. RAP1 acts as a molecular switch by cycling between an inactive GDP-bound form and an active GTP-bound form. The product of this gene, RAP1GAP, promotes the hydrolysis of bound GTP and hence returns RAP1 to the inactive state whereas other proteins, guanine nucleotide exchange factors (GEFs), act as RAP1 activators by facilitating the conversion of RAP1 from the GDP- to the GTP-bound form. In general, ras subfamily proteins, such as RAP1, play key roles in receptor-linked signaling pathways that control cell growth and differentiation. RAP1 plays a role in diverse processes such as cell proliferation, adhesion, differentiation, and embryogenesis. Alternative splicing results in multiple transcript variants encoding distinct proteins. [provided by RefSeq, Aug 2011]
Allele List at MGI
Other mutations in this stock
Total: 28 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abhd11 T A 5: 135,011,376 V202D probably damaging Het
Afdn A G 17: 13,810,481 N218S probably damaging Het
AI314180 G T 4: 58,861,544 T345K probably benign Het
Arhgef1 G A 7: 24,925,783 probably null Het
Atp1a2 G T 1: 172,276,187 T959K probably damaging Het
Atp6v0a2 A G 5: 124,636,105 E96G probably benign Het
B9d1 A T 11: 61,512,379 M52L probably benign Het
Col6a6 T A 9: 105,783,909 I334F probably damaging Het
Drd3 T C 16: 43,818,308 F259L probably benign Het
Drosha T G 15: 12,889,719 L891R probably damaging Het
Fam71e2 T C 7: 4,770,695 N67S possibly damaging Het
Gm10718 A T 9: 3,025,118 Y194F probably benign Het
Greb1l T C 18: 10,557,280 V1760A possibly damaging Het
Il1f8 T A 2: 24,155,279 W48R probably damaging Het
Ipo9 C A 1: 135,405,886 V353F probably damaging Het
Kmt2a A T 9: 44,849,767 F126I probably damaging Het
Mmrn1 T C 6: 60,971,183 probably null Het
Nup214 T A 2: 32,034,959 C328* probably null Het
Olfr1013 A G 2: 85,770,040 I80V probably damaging Het
Pcdh17 G T 14: 84,447,520 V476L probably benign Het
Pcdh17 T A 14: 84,447,521 V476E probably damaging Het
Prpf38b A T 3: 108,904,675 S291R probably benign Het
Rnf213 T C 11: 119,416,457 Y648H probably benign Het
Slfn3 A G 11: 83,213,148 T282A possibly damaging Het
Ttll3 C T 6: 113,414,115 T887I probably benign Het
Vmn1r197 A G 13: 22,328,338 N143S possibly damaging Het
Vmn2r-ps159 C T 4: 156,338,254 noncoding transcript Het
Xpo4 T C 14: 57,604,398 I487V probably benign Het
Other mutations in Rap1gap
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00771:Rap1gap APN 4 137716524 missense probably damaging 0.98
IGL01810:Rap1gap APN 4 137716155 missense probably benign 0.07
IGL02117:Rap1gap APN 4 137727044 missense probably damaging 0.98
IGL02271:Rap1gap APN 4 137718006 missense probably damaging 1.00
IGL02272:Rap1gap APN 4 137716566 missense probably damaging 1.00
IGL02590:Rap1gap APN 4 137720300 missense probably damaging 0.98
IGL02626:Rap1gap APN 4 137727053 missense probably benign 0.00
IGL03211:Rap1gap APN 4 137715846 critical splice donor site probably null
R0243:Rap1gap UTSW 4 137719351 missense probably damaging 0.99
R1239:Rap1gap UTSW 4 137717996 missense probably damaging 1.00
R1246:Rap1gap UTSW 4 137712094 missense possibly damaging 0.86
R2264:Rap1gap UTSW 4 137727723 missense probably benign
R2935:Rap1gap UTSW 4 137724731 missense probably benign 0.19
R3840:Rap1gap UTSW 4 137717447 missense probably damaging 1.00
R3841:Rap1gap UTSW 4 137717447 missense probably damaging 1.00
R4619:Rap1gap UTSW 4 137716111 missense probably damaging 1.00
R4821:Rap1gap UTSW 4 137712129 missense probably damaging 0.99
R4998:Rap1gap UTSW 4 137728284 missense possibly damaging 0.80
R5061:Rap1gap UTSW 4 137720433 critical splice donor site probably null
R5800:Rap1gap UTSW 4 137720377 missense probably benign 0.00
R6259:Rap1gap UTSW 4 137681757 critical splice donor site probably null
R7082:Rap1gap UTSW 4 137718936 missense probably damaging 1.00
R7098:Rap1gap UTSW 4 137716082 splice site probably null
R7234:Rap1gap UTSW 4 137728540 nonsense probably null
R7580:Rap1gap UTSW 4 137719982 missense possibly damaging 0.94
Posted On2014-05-07