Mutagenetix > Incidental Mutation

Incidental Mutation 'R2106:Trafd1'

230958

Institutional Source

Beutler Lab

Gene Symbol

Trafd1

Ensembl Gene

ENSMUSG00000042726

Gene Name

TRAF type zinc finger domain containing 1

Synonyms

Fln29, 1110008K06Rik

MMRRC Submission

040110-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2106 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

121509788-121523695 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 121511274 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 515 (S515P)

Ref Sequence

ENSEMBL: ENSMUSP00000113910 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042312] [ENSMUST00000042614] [ENSMUST00000120784] [ENSMUST00000156158]

AlphaFold

Q3UDK1

Predicted Effect

probably benign
Transcript: ENSMUST00000042312
AA Change: S515P

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000047475
Gene: ENSMUSG00000042726
AA Change: S515P

Domain	Start	End	E-Value	Type
ZnF_C2H2	37	59	1.55e1	SMART
PDB:2D9K\|A	78	137	7e-33	PDB
low complexity region	211	228	N/A	INTRINSIC
ZnF_C2H2	291	316	2.57e2	SMART
internal_repeat_1	364	390	2.73e-6	PROSPERO
low complexity region	534	551	N/A	INTRINSIC
low complexity region	561	573	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000042614

SMART Domains

Protein: ENSMUSP00000048345
Gene: ENSMUSG00000042744

Domain	Start	End	E-Value	Type
low complexity region	224	234	N/A	INTRINSIC
low complexity region	266	282	N/A	INTRINSIC
low complexity region	553	564	N/A	INTRINSIC
low complexity region	725	735	N/A	INTRINSIC
low complexity region	1252	1265	N/A	INTRINSIC
coiled coil region	1372	1398	N/A	INTRINSIC
low complexity region	1551	1562	N/A	INTRINSIC
low complexity region	1725	1741	N/A	INTRINSIC
low complexity region	1892	1904	N/A	INTRINSIC
low complexity region	2656	2666	N/A	INTRINSIC
low complexity region	2857	2872	N/A	INTRINSIC
low complexity region	2901	2917	N/A	INTRINSIC
low complexity region	2921	2933	N/A	INTRINSIC
low complexity region	3232	3246	N/A	INTRINSIC
low complexity region	3275	3335	N/A	INTRINSIC
low complexity region	3441	3448	N/A	INTRINSIC
low complexity region	3473	3506	N/A	INTRINSIC
low complexity region	3512	3533	N/A	INTRINSIC
low complexity region	3540	3554	N/A	INTRINSIC
low complexity region	3794	3822	N/A	INTRINSIC
HECTc	4048	4412	4.78e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000120784
AA Change: S515P

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000113910
Gene: ENSMUSG00000042726
AA Change: S515P

Domain	Start	End	E-Value	Type
ZnF_C2H2	37	59	1.55e1	SMART
PDB:2D9K\|A	78	137	7e-33	PDB
low complexity region	211	228	N/A	INTRINSIC
ZnF_C2H2	291	316	2.57e2	SMART
internal_repeat_1	364	390	3.07e-6	PROSPERO
low complexity region	531	545	N/A	INTRINSIC
low complexity region	557	569	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133138

Predicted Effect

probably benign
Transcript: ENSMUST00000156158

SMART Domains

Protein: ENSMUSP00000143426
Gene: ENSMUSG00000042726

Domain	Start	End	E-Value	Type
PDB:2D9K\|A	1	32	3e-15	PDB
low complexity region	106	123	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000202064

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.7%
20x: 96.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The innate immune system confers host defense against viral and microbial infection, and TRAFD1 is a negative feedback regulator that controls excessive immune responses (Sanada et al., 2008 [PubMed 18849341]).[supplied by OMIM, Dec 2009]
PHENOTYPE: Mice homozygous for a null allele exhibit increased susceptibility to endotoxin shock and decreased susceptibility to viral infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl2	T	C	2: 26,992,837 (GRCm39)	F650S	probably benign	Het
Agrp	G	T	8: 106,293,467 (GRCm39)	T106K	probably damaging	Het
Akr1c13	T	A	13: 4,248,593 (GRCm39)	V266E	probably damaging	Het
Ankrd61	A	T	5: 143,828,564 (GRCm39)	L95Q	probably damaging	Het
Atp11a	A	G	8: 12,885,228 (GRCm39)	T22A	probably benign	Het
Brca1	A	G	11: 101,415,803 (GRCm39)	V777A	possibly damaging	Het
Ccdc40	G	T	11: 119,155,123 (GRCm39)	R1121L	probably damaging	Het
Cdhr4	A	C	9: 107,874,693 (GRCm39)	S588R	possibly damaging	Het
Cfap69	T	C	5: 5,645,979 (GRCm39)	N517D	probably benign	Het
Chrm2	T	C	6: 36,500,382 (GRCm39)	Y80H	probably damaging	Het
Cimip2a	A	G	2: 25,110,663 (GRCm39)	Y157C	probably damaging	Het
Csgalnact2	G	T	6: 118,086,090 (GRCm39)	Y534*	probably null	Het
Defb35	A	G	8: 22,430,809 (GRCm39)	E61G	unknown	Het
Dhx15	A	T	5: 52,327,428 (GRCm39)	D95E	probably benign	Het
Dhx57	A	G	17: 80,582,792 (GRCm39)	V271A	probably damaging	Het
Dlg1	T	C	16: 31,631,574 (GRCm39)	S444P	probably damaging	Het
Edem1	T	A	6: 108,825,686 (GRCm39)	N406K	probably damaging	Het
Eif4g3	A	T	4: 137,810,230 (GRCm39)		probably benign	Het
Epb41	A	G	4: 131,717,152 (GRCm39)	I56T	probably damaging	Het
Epg5	T	A	18: 78,034,578 (GRCm39)	Y1442*	probably null	Het
Fat2	T	C	11: 55,147,390 (GRCm39)	T3951A	probably benign	Het
Fryl	A	G	5: 73,255,674 (GRCm39)	S786P	probably damaging	Het
Fyb2	A	G	4: 104,802,769 (GRCm39)	T224A	probably benign	Het
Ginm1	A	T	10: 7,651,090 (GRCm39)	F105L	probably damaging	Het
Heatr1	T	C	13: 12,426,939 (GRCm39)	V688A	probably benign	Het
Hnmt	T	G	2: 23,909,130 (GRCm39)	Q94H	probably benign	Het
Ice1	A	G	13: 70,753,741 (GRCm39)	Y782H	probably benign	Het
Immt	T	C	6: 71,848,499 (GRCm39)	V418A	possibly damaging	Het
Kcnd3	C	T	3: 105,566,082 (GRCm39)	A421V	probably damaging	Het
Kif1b	G	A	4: 149,272,097 (GRCm39)	S1568L	possibly damaging	Het
Krt84	T	C	15: 101,439,301 (GRCm39)	N248D	probably damaging	Het
Lig1	C	A	7: 13,039,863 (GRCm39)	R692S	probably damaging	Het
Lvrn	G	T	18: 47,011,356 (GRCm39)	A438S	probably damaging	Het
Mast4	C	T	13: 102,887,054 (GRCm39)	V1204I	probably damaging	Het
Med21	G	T	6: 146,550,710 (GRCm39)	D74Y	probably damaging	Het
Nat8	T	C	6: 85,807,506 (GRCm39)	D209G	probably benign	Het
Nipal1	C	A	5: 72,820,902 (GRCm39)	F132L	probably damaging	Het
Npr2	A	T	4: 43,644,329 (GRCm39)	I613F	probably damaging	Het
Nrcam	A	G	12: 44,617,073 (GRCm39)	T706A	probably benign	Het
Or5w1b	A	G	2: 87,475,895 (GRCm39)	S191P	probably damaging	Het
Or8w1	T	C	2: 87,465,503 (GRCm39)	E196G	probably benign	Het
Pam	A	G	1: 97,759,215 (GRCm39)	V823A	probably damaging	Het
Pdik1l	A	T	4: 134,011,565 (GRCm39)	Y93N	probably damaging	Het
Perm1	T	C	4: 156,303,336 (GRCm39)	W627R	probably damaging	Het
Pofut1	G	A	2: 153,101,713 (GRCm39)		probably null	Het
Prmt5	T	C	14: 54,745,374 (GRCm39)	I598V	probably benign	Het
Rab11fip5	T	C	6: 85,351,369 (GRCm39)	I48V	probably damaging	Het
Rad51d	T	A	11: 82,770,134 (GRCm39)	K261N	probably damaging	Het
Rapgef6	T	G	11: 54,559,512 (GRCm39)	I1050S	probably benign	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Ryr3	T	C	2: 112,468,474 (GRCm39)	E4688G	probably damaging	Het
Siva1	G	T	12: 112,613,440 (GRCm39)	R96L	probably damaging	Het
Slc13a4	T	C	6: 35,264,799 (GRCm39)	N140S	probably damaging	Het
Slc26a5	T	A	5: 22,028,542 (GRCm39)	D342V	probably damaging	Het
Slfn9	A	G	11: 82,878,506 (GRCm39)	S208P	possibly damaging	Het
Sspo	C	A	6: 48,443,250 (GRCm39)	T1899N	possibly damaging	Het
Sytl1	T	C	4: 132,984,774 (GRCm39)	D200G	probably benign	Het
Tas2r118	T	C	6: 23,969,569 (GRCm39)	N164S	probably benign	Het
Tbc1d17	A	G	7: 44,497,692 (GRCm39)		probably null	Het
Tex14	T	C	11: 87,377,076 (GRCm39)	M140T	possibly damaging	Het
Tm6sf2	T	C	8: 70,532,396 (GRCm39)	F352S	probably benign	Het
Tmem88	A	G	11: 69,288,685 (GRCm39)	L78P	probably benign	Het
Trpm6	A	T	19: 18,790,714 (GRCm39)	E583V	possibly damaging	Het
Ttc23l	A	G	15: 10,547,342 (GRCm39)	C91R	probably damaging	Het
Ubap1l	T	C	9: 65,281,089 (GRCm39)	S256P	probably benign	Het
Vmn1r26	T	G	6: 57,985,710 (GRCm39)	S160R	possibly damaging	Het
Vmn2r97	A	G	17: 19,168,100 (GRCm39)	S785G	probably damaging	Het
Wdr27	T	G	17: 15,141,116 (GRCm39)	R278S	probably benign	Het
Wdr7	T	C	18: 63,911,109 (GRCm39)	S834P	probably damaging	Het
Zdhhc12	C	T	2: 29,981,814 (GRCm39)	C116Y	probably damaging	Het
Zfp946	T	C	17: 22,672,466 (GRCm39)	F22L	probably benign	Het
Zfp948	G	T	17: 21,807,953 (GRCm39)	E382*	probably null	Het
Zfp956	T	A	6: 47,941,359 (GRCm39)	*573K	probably null	Het
Zim1	T	G	7: 6,681,073 (GRCm39)	T197P	probably benign	Het

Other mutations in Trafd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01774:Trafd1	APN	5	121,513,113 (GRCm39)	missense	possibly damaging	0.93
IGL01951:Trafd1	APN	5	121,512,094 (GRCm39)	missense	possibly damaging	0.94
IGL01955:Trafd1	APN	5	121,513,217 (GRCm39)	missense	probably benign	0.00
R1136:Trafd1	UTSW	5	121,511,387 (GRCm39)	missense	possibly damaging	0.94
R1386:Trafd1	UTSW	5	121,517,715 (GRCm39)	missense	probably damaging	1.00
R1599:Trafd1	UTSW	5	121,517,720 (GRCm39)	missense	probably damaging	1.00
R2989:Trafd1	UTSW	5	121,517,529 (GRCm39)	missense	probably damaging	0.99
R3895:Trafd1	UTSW	5	121,516,804 (GRCm39)	missense	probably benign	0.45
R4419:Trafd1	UTSW	5	121,511,396 (GRCm39)	missense	probably benign	0.00
R4536:Trafd1	UTSW	5	121,517,746 (GRCm39)	critical splice acceptor site	probably null
R4814:Trafd1	UTSW	5	121,512,079 (GRCm39)	missense	probably benign	0.01
R4822:Trafd1	UTSW	5	121,516,561 (GRCm39)	missense	probably damaging	1.00
R4939:Trafd1	UTSW	5	121,513,254 (GRCm39)	missense	probably benign	0.00
R5560:Trafd1	UTSW	5	121,511,366 (GRCm39)	missense	possibly damaging	0.68
R5849:Trafd1	UTSW	5	121,511,534 (GRCm39)	missense	probably damaging	1.00
R5980:Trafd1	UTSW	5	121,511,520 (GRCm39)	missense	probably damaging	0.99
R5982:Trafd1	UTSW	5	121,511,342 (GRCm39)	missense	probably damaging	1.00
R6919:Trafd1	UTSW	5	121,522,137 (GRCm39)	nonsense	probably null
R8128:Trafd1	UTSW	5	121,510,465 (GRCm39)	missense	possibly damaging	0.89
R8265:Trafd1	UTSW	5	121,511,340 (GRCm39)	missense	possibly damaging	0.95
R8756:Trafd1	UTSW	5	121,513,878 (GRCm39)	missense	probably damaging	1.00
R9046:Trafd1	UTSW	5	121,513,189 (GRCm39)	missense	probably benign
R9130:Trafd1	UTSW	5	121,516,573 (GRCm39)	missense	probably benign	0.01
R9173:Trafd1	UTSW	5	121,516,598 (GRCm39)	missense	possibly damaging	0.78
R9513:Trafd1	UTSW	5	121,516,837 (GRCm39)	missense	possibly damaging	0.89
R9699:Trafd1	UTSW	5	121,517,727 (GRCm39)	missense	probably benign	0.03
Z1176:Trafd1	UTSW	5	121,515,933 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCCGCATTATTCTGCATGTG -3'
(R):5'- TGAACAATGTGGCTTCCTGC -3'

Sequencing Primer
(F):5'- GTTTCTGAAGATCAAACTCAGGCC -3'
(R):5'- TGGCTTCCTGCAACCGAC -3'

Posted On

2014-09-18