Mutagenetix > Incidental Mutation

Incidental Mutation 'R2974:Cstdc2'

255312

Institutional Source

Beutler Lab

Gene Symbol

Cstdc2

Ensembl Gene

ENSMUSG00000027446

Gene Name

cystatin domain containing 2

Synonyms

9230104L09Rik, mCST E2

MMRRC Submission

040527-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2974 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

148686540-148692882 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 148692706 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 32 (D32G)

Ref Sequence

ENSEMBL: ENSMUSP00000028937 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028937]

AlphaFold

Q9D264

Predicted Effect

probably benign
Transcript: ENSMUST00000028937
AA Change: D32G

PolyPhen 2 Score 0.196 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000028937
Gene: ENSMUSG00000027446
AA Change: D32G

Domain	Start	End	E-Value	Type
Pfam:Cystatin	35	118	3.8e-11	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149457

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.6%

Validation Efficiency

97% (38/39)

Allele List at MGI

Other mutations in this stock

Total: 33 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca7	T	G	10: 79,844,801 (GRCm39)	F1508V	probably damaging	Het
Aoc1l1	A	G	6: 48,953,358 (GRCm39)	T428A	probably benign	Het
BC048507	T	C	13: 68,011,749 (GRCm39)	I42T	probably benign	Het
Cop1	A	G	1: 159,152,499 (GRCm39)	H583R	possibly damaging	Het
Crnkl1	A	G	2: 145,774,181 (GRCm39)	L94P	probably benign	Het
Ctu1	A	G	7: 43,325,074 (GRCm39)		probably benign	Het
D930007J09Rik	C	T	13: 32,986,742 (GRCm39)		probably benign	Het
Depdc5	T	C	5: 33,091,361 (GRCm39)		probably null	Het
Dnah14	A	T	1: 181,582,806 (GRCm39)		probably null	Het
Dpp10	A	G	1: 123,339,434 (GRCm39)		probably benign	Het
Gsdme	A	G	6: 50,206,304 (GRCm39)	C180R	probably damaging	Het
Gse1	C	A	8: 121,297,636 (GRCm39)		probably benign	Het
Med15	T	C	16: 17,470,575 (GRCm39)	Y744C	probably damaging	Het
Nlrp4d	A	G	7: 10,112,367 (GRCm39)		probably benign	Het
Nyap2	C	T	1: 81,169,485 (GRCm39)	R81*	probably null	Het
Or4p21	A	T	2: 88,276,918 (GRCm39)	C121*	probably null	Het
Or8g30	T	C	9: 39,230,292 (GRCm39)	N206S	probably damaging	Het
Phax	T	A	18: 56,706,134 (GRCm39)	M8K	probably benign	Het
Plec	C	G	15: 76,072,961 (GRCm39)	G631R	probably damaging	Het
Rgs3	A	T	4: 62,558,957 (GRCm39)	T476S	probably damaging	Het
Rogdi	G	T	16: 4,829,526 (GRCm39)	Q90K	probably damaging	Het
Rxrg	G	A	1: 167,466,715 (GRCm39)	R422H	probably damaging	Het
Serpinb9e	T	A	13: 33,439,126 (GRCm39)	V184E	probably benign	Het
Simc1	A	G	13: 54,698,274 (GRCm39)	D397G	probably damaging	Het
Slc25a27	T	C	17: 43,964,262 (GRCm39)	N203D	probably damaging	Het
Slit1	G	A	19: 41,599,455 (GRCm39)	P1032L	probably benign	Het
Sptlc3	A	G	2: 139,431,581 (GRCm39)	T368A	probably damaging	Het
Tnip1	C	T	11: 54,824,809 (GRCm39)		probably benign	Het
Tpgs1	A	G	10: 79,505,449 (GRCm39)	E69G	probably damaging	Het
Trpv5	T	C	6: 41,630,165 (GRCm39)	S642G	possibly damaging	Het
Ube2d2a	T	A	18: 35,933,225 (GRCm39)	D87E	possibly damaging	Het
Vmn2r117	A	G	17: 23,678,830 (GRCm39)	V798A	probably damaging	Het
Vmn2r77	T	C	7: 86,452,893 (GRCm39)	Y537H	probably benign	Het

Other mutations in Cstdc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02414:Cstdc2	APN	2	148,692,598 (GRCm39)	missense	possibly damaging	0.70
R2973:Cstdc2	UTSW	2	148,692,706 (GRCm39)	missense	probably benign	0.20
R3789:Cstdc2	UTSW	2	148,689,878 (GRCm39)	nonsense	probably null
R3802:Cstdc2	UTSW	2	148,692,616 (GRCm39)	missense	probably benign	0.02
R4796:Cstdc2	UTSW	2	148,692,658 (GRCm39)	missense	probably damaging	0.99
R6330:Cstdc2	UTSW	2	148,692,745 (GRCm39)	missense	probably damaging	0.99
R6623:Cstdc2	UTSW	2	148,692,682 (GRCm39)	missense	probably benign	0.05
R7440:Cstdc2	UTSW	2	148,688,911 (GRCm39)	missense	probably damaging	1.00
R7809:Cstdc2	UTSW	2	148,688,910 (GRCm39)	missense	probably damaging	0.99
R9169:Cstdc2	UTSW	2	148,692,589 (GRCm39)	critical splice donor site	probably null
R9443:Cstdc2	UTSW	2	148,689,878 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAAAAGTGTCCTGCCTGC -3'
(R):5'- CGGAGTGATGATCAAGAGAATCCC -3'

Sequencing Primer
(F):5'- GTCCTGCCTGCTTTATCAGAAAACAG -3'
(R):5'- GCCCAGGAAATTAATTTAAGGGTTAG -3'

Posted On

2014-12-29