Mutagenetix > Incidental Mutation

Incidental Mutation 'R3752:Nobox'

271256

Institutional Source

Beutler Lab

Gene Symbol

Nobox

Ensembl Gene

ENSMUSG00000029736

Gene Name

NOBOX oogenesis homeobox

Synonyms

Og2x

MMRRC Submission

040737-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.457) question?

Stock #

R3752 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

43280608-43286488 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 43284167 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Asparagine at position 126 (K126N)

Ref Sequence

ENSEMBL: ENSMUSP00000031749 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031749]

AlphaFold

Q8VIH1

Predicted Effect

probably damaging
Transcript: ENSMUST00000031749
AA Change: K126N

PolyPhen 2 Score 0.959 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000031749
Gene: ENSMUSG00000029736
AA Change: K126N

Domain	Start	End	E-Value	Type
HOX	136	198	5.04e-23	SMART
low complexity region	364	384	N/A	INTRINSIC
low complexity region	389	403	N/A	INTRINSIC
low complexity region	408	420	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000172554
AA Change: K1N

SMART Domains

Protein: ENSMUSP00000133353
Gene: ENSMUSG00000029736
AA Change: K1N

Domain	Start	End	E-Value	Type
Pfam:Homeobox	1	22	4e-7	PFAM
low complexity region	161	173	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183706

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.1%
3x: 98.6%
10x: 97.2%
20x: 94.8%

Validation Efficiency

100% (49/49)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This homeobox gene encodes a transcription factor that is thought to play a role in oogenesis. In mice, it is essential for folliculogenesis and regulation of oocyte-specific genes. Defects in this gene result in premature ovarian failure type 5.[provided by RefSeq, May 2011]
PHENOTYPE: Mice homozygous for disruptions in this gene display oocyte degeneration after birth, atrophic ovaries, and female infertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A830018L16Rik	T	A	1: 11,588,904 (GRCm39)	I107N	probably damaging	Het
Adh1	G	A	3: 137,994,555 (GRCm39)	V292I	probably benign	Het
Brd1	C	T	15: 88,573,821 (GRCm39)	V1093I	possibly damaging	Het
Cep170	A	G	1: 176,610,061 (GRCm39)		probably benign	Het
Col4a4	G	A	1: 82,458,215 (GRCm39)	P1120S	probably damaging	Het
Cramp1	A	T	17: 25,190,532 (GRCm39)	N1067K	probably damaging	Het
Dhrs7c	A	G	11: 67,702,281 (GRCm39)	T90A	probably damaging	Het
E2f1	C	G	2: 154,405,942 (GRCm39)	G144R	probably damaging	Het
Eml6	C	A	11: 29,759,360 (GRCm39)	V798F	probably benign	Het
Ext1	A	T	15: 52,939,306 (GRCm39)	V581E	probably damaging	Het
Fbf1	C	T	11: 116,038,622 (GRCm39)	R833Q	probably benign	Het
Fbln1	T	A	15: 85,111,279 (GRCm39)	C144*	probably null	Het
Gm10521	A	G	1: 171,723,712 (GRCm39)	T8A	unknown	Het
Hapln4	A	T	8: 70,539,615 (GRCm39)	L215F	probably damaging	Het
Hmgcr	T	C	13: 96,799,624 (GRCm39)	I157V	probably damaging	Het
Irak4	T	C	15: 94,459,476 (GRCm39)	I364T	probably damaging	Het
Lama3	T	A	18: 12,640,086 (GRCm39)	C1700S	probably damaging	Het
Lama5	C	T	2: 179,829,015 (GRCm39)	C2042Y	probably damaging	Het
Lrrc9	T	G	12: 72,507,580 (GRCm39)	Y360*	probably null	Het
Lrrd1	T	A	5: 3,900,282 (GRCm39)	S196T	probably benign	Het
Mdc1	C	T	17: 36,156,821 (GRCm39)	A76V	probably damaging	Het
Mei1	C	T	15: 81,970,383 (GRCm39)	T428M	probably damaging	Het
Mib2	A	G	4: 155,739,741 (GRCm39)	F810S	probably damaging	Het
Ogn	C	T	13: 49,776,307 (GRCm39)	L249F	probably benign	Het
Or10ag59	A	G	2: 87,406,057 (GRCm39)	I210V	probably benign	Het
Or6a2	A	T	7: 106,600,682 (GRCm39)	Y128*	probably null	Het
Paqr8	A	G	1: 21,005,856 (GRCm39)	T337A	probably benign	Het
Pcdhb15	T	A	18: 37,606,810 (GRCm39)	V14E	probably damaging	Het
Perm1	A	T	4: 156,302,403 (GRCm39)	I316L	probably benign	Het
Plxnb2	G	A	15: 89,041,458 (GRCm39)		probably benign	Het
Rab3il1	A	T	19: 10,007,841 (GRCm39)	T227S	probably benign	Het
Rag2	A	T	2: 101,461,121 (GRCm39)	Y477F	probably damaging	Het
Ralgapa2	A	T	2: 146,263,551 (GRCm39)	V722E	possibly damaging	Het
Rbp3	A	T	14: 33,677,969 (GRCm39)	E639V	probably damaging	Het
Sh2b1	A	G	7: 126,067,959 (GRCm39)	V565A	probably damaging	Het
Skint6	T	C	4: 112,700,096 (GRCm39)		probably benign	Het
Slc47a1	C	T	11: 61,235,207 (GRCm39)	R542Q	possibly damaging	Het
Slc6a5	T	C	7: 49,586,062 (GRCm39)		probably null	Het
Slc9a8	C	A	2: 167,299,272 (GRCm39)	H215N	probably benign	Het
Slit1	C	T	19: 41,635,406 (GRCm39)		probably null	Het
Snx1	A	T	9: 66,012,933 (GRCm39)		probably null	Het
Tbc1d30	T	A	10: 121,108,073 (GRCm39)	N443I	probably damaging	Het
Tex15	T	A	8: 34,061,443 (GRCm39)	M565K	probably benign	Het
Traf3ip1	T	C	1: 91,428,639 (GRCm39)		probably benign	Het
Traf3ip1	A	G	1: 91,446,019 (GRCm39)	D384G	probably damaging	Het
Vldlr	G	A	19: 27,215,731 (GRCm39)	E243K	probably damaging	Het
Vps35	A	G	8: 86,001,460 (GRCm39)	S453P	probably benign	Het
Zfp644	A	G	5: 106,784,249 (GRCm39)	V766A	probably benign	Het

Other mutations in Nobox

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01144:Nobox	APN	6	43,280,935 (GRCm39)	missense	possibly damaging	0.85
IGL01399:Nobox	APN	6	43,280,972 (GRCm39)	missense	probably benign	0.06
IGL01523:Nobox	APN	6	43,281,057 (GRCm39)	missense	probably damaging	0.96
IGL01762:Nobox	APN	6	43,280,927 (GRCm39)	missense	probably damaging	0.96
IGL02007:Nobox	APN	6	43,284,472 (GRCm39)	missense	probably damaging	0.99
IGL02582:Nobox	APN	6	43,281,973 (GRCm39)	missense	possibly damaging	0.53
IGL02733:Nobox	APN	6	43,284,136 (GRCm39)	missense	possibly damaging	0.95
IGL02902:Nobox	APN	6	43,282,617 (GRCm39)	missense	probably benign	0.12
IGL02988:Nobox	UTSW	6	43,282,095 (GRCm39)	missense	possibly damaging	0.79
R0056:Nobox	UTSW	6	43,281,853 (GRCm39)	missense	probably benign	0.23
R0418:Nobox	UTSW	6	43,284,169 (GRCm39)	missense	probably null
R0699:Nobox	UTSW	6	43,284,144 (GRCm39)	missense	probably benign	0.11
R1387:Nobox	UTSW	6	43,284,132 (GRCm39)	missense	probably damaging	1.00
R1619:Nobox	UTSW	6	43,284,401 (GRCm39)	missense	possibly damaging	0.86
R1630:Nobox	UTSW	6	43,284,146 (GRCm39)	nonsense	probably null
R2184:Nobox	UTSW	6	43,281,819 (GRCm39)	missense	possibly damaging	0.72
R2760:Nobox	UTSW	6	43,281,040 (GRCm39)	missense	probably damaging	0.99
R4273:Nobox	UTSW	6	43,282,942 (GRCm39)	missense	probably benign	0.12
R4790:Nobox	UTSW	6	43,282,480 (GRCm39)	missense	probably benign	0.12
R4805:Nobox	UTSW	6	43,282,053 (GRCm39)	missense	probably damaging	0.99
R6109:Nobox	UTSW	6	43,282,103 (GRCm39)	missense	probably damaging	0.98
R6759:Nobox	UTSW	6	43,284,538 (GRCm39)	missense	possibly damaging	0.70
R7761:Nobox	UTSW	6	43,281,125 (GRCm39)	nonsense	probably null
R8084:Nobox	UTSW	6	43,282,101 (GRCm39)	missense	possibly damaging	0.92
R8113:Nobox	UTSW	6	43,282,951 (GRCm39)	missense	probably benign	0.25
R8467:Nobox	UTSW	6	43,282,479 (GRCm39)	missense	probably benign	0.12
R9035:Nobox	UTSW	6	43,284,522 (GRCm39)	missense	probably damaging	0.96
R9474:Nobox	UTSW	6	43,284,115 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAGATAGCCTGCCTGGTCTTCC -3'
(R):5'- CTGAAGCCATCCATTTCTGCAG -3'

Sequencing Primer
(F):5'- TTGACATTGCCATAGACAAAGAG -3'
(R):5'- ATTTCTGCAGTCCCTGGTAAG -3'

Posted On

2015-03-18