Incidental Mutation 'IGL02210:Nherf4'
ID |
284652 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Nherf4
|
Ensembl Gene |
ENSMUSG00000032105 |
Gene Name |
NHERF family PDZ scaffold protein 4 |
Synonyms |
NaPi-Cap2, sodium-phosphate cotransporter IIa C-terminal-associated protein 2, Pdzk2, Pdzd3 |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL02210
|
Quality Score |
|
Status
|
|
Chromosome |
9 |
Chromosomal Location |
44158609-44162761 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to G
at 44159614 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Proline
at position 461
(T461P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000034618
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000034618]
[ENSMUST00000034621]
[ENSMUST00000092426]
[ENSMUST00000168499]
[ENSMUST00000169651]
[ENSMUST00000213891]
[ENSMUST00000215554]
[ENSMUST00000215711]
[ENSMUST00000216632]
[ENSMUST00000217221]
[ENSMUST00000217510]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably benign
Transcript: ENSMUST00000034618
AA Change: T461P
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000034618 Gene: ENSMUSG00000032105 AA Change: T461P
Domain | Start | End | E-Value | Type |
low complexity region
|
3 |
15 |
N/A |
INTRINSIC |
PDZ
|
58 |
130 |
2.04e-15 |
SMART |
PDZ
|
165 |
235 |
2.93e-7 |
SMART |
PDZ
|
271 |
346 |
2.47e-14 |
SMART |
PDZ
|
403 |
475 |
1.4e-13 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000034621
|
SMART Domains |
Protein: ENSMUSP00000034621 Gene: ENSMUSG00000032109
Domain | Start | End | E-Value | Type |
Pfam:NACHT
|
160 |
325 |
1.1e-22 |
PFAM |
low complexity region
|
543 |
556 |
N/A |
INTRINSIC |
LRR
|
695 |
722 |
1.66e2 |
SMART |
LRR
|
749 |
776 |
3.59e1 |
SMART |
LRR
|
778 |
805 |
6.23e-2 |
SMART |
LRR
|
806 |
833 |
1.13e0 |
SMART |
LRR
|
834 |
861 |
1.99e1 |
SMART |
LRR
|
862 |
885 |
8.11e1 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000092426
|
SMART Domains |
Protein: ENSMUSP00000090082 Gene: ENSMUSG00000070306
Domain | Start | End | E-Value | Type |
low complexity region
|
4 |
19 |
N/A |
INTRINSIC |
coiled coil region
|
26 |
148 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000168499
|
SMART Domains |
Protein: ENSMUSP00000127531 Gene: ENSMUSG00000032109
Domain | Start | End | E-Value | Type |
Pfam:NACHT
|
160 |
325 |
1.3e-23 |
PFAM |
low complexity region
|
543 |
556 |
N/A |
INTRINSIC |
LRR
|
695 |
722 |
1.66e2 |
SMART |
LRR
|
749 |
776 |
3.59e1 |
SMART |
LRR
|
778 |
805 |
6.23e-2 |
SMART |
LRR
|
806 |
833 |
1.13e0 |
SMART |
LRR
|
834 |
861 |
1.99e1 |
SMART |
LRR
|
862 |
885 |
8.11e1 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000169651
|
SMART Domains |
Protein: ENSMUSP00000126555 Gene: ENSMUSG00000032109
Domain | Start | End | E-Value | Type |
Pfam:NACHT
|
160 |
325 |
1.3e-23 |
PFAM |
low complexity region
|
543 |
556 |
N/A |
INTRINSIC |
LRR
|
695 |
722 |
1.66e2 |
SMART |
LRR
|
749 |
776 |
3.59e1 |
SMART |
LRR
|
778 |
805 |
6.23e-2 |
SMART |
LRR
|
806 |
833 |
1.13e0 |
SMART |
LRR
|
834 |
861 |
1.99e1 |
SMART |
LRR
|
862 |
885 |
8.11e1 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000213186
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000213891
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000215554
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000215711
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000216047
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000216632
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000217221
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000217510
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Guanylyl cyclase C (GCC, or GUCY2C; MIM 601330) produces cGMP following the binding of either endogenous ligands or heat-stable enterotoxins secreted by E. coli and other enteric bacteria. Activation of GCC initiates a signaling cascade that leads to phosphorylation of the cystic fibrosis transmembrane conductance regulator (CFTR; MIM 602421), followed by a net efflux of ions and water into the intestinal lumen. IKEPP is a regulatory protein that associates with GCC and regulates the amount of cGMP produced following receptor stimulation (Scott et al., 2002 [PubMed 11950846]).[supplied by OMIM, Mar 2008]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 43 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abcc9 |
A |
G |
6: 142,633,097 (GRCm39) |
F215S |
probably damaging |
Het |
Acvr2a |
A |
T |
2: 48,788,538 (GRCm39) |
H422L |
probably damaging |
Het |
Adcy6 |
T |
C |
15: 98,492,852 (GRCm39) |
Y908C |
possibly damaging |
Het |
Alyref |
A |
C |
11: 120,488,499 (GRCm39) |
S110A |
possibly damaging |
Het |
Ankrd1 |
T |
C |
19: 36,095,714 (GRCm39) |
D86G |
probably damaging |
Het |
Anpep |
T |
A |
7: 79,476,652 (GRCm39) |
Y29F |
probably benign |
Het |
Appl1 |
T |
C |
14: 26,647,909 (GRCm39) |
|
probably benign |
Het |
Arrdc5 |
T |
C |
17: 56,607,026 (GRCm39) |
D73G |
probably damaging |
Het |
Atp12a |
T |
A |
14: 56,609,201 (GRCm39) |
Y142* |
probably null |
Het |
Clec4a3 |
T |
A |
6: 122,931,067 (GRCm39) |
I52N |
probably damaging |
Het |
Cmya5 |
G |
A |
13: 93,229,242 (GRCm39) |
P1949S |
probably benign |
Het |
Crybb2 |
T |
A |
5: 113,206,253 (GRCm39) |
Q194L |
probably damaging |
Het |
Dmxl2 |
A |
C |
9: 54,311,333 (GRCm39) |
L1796R |
probably damaging |
Het |
Ecm1 |
A |
G |
3: 95,643,289 (GRCm39) |
F337S |
probably damaging |
Het |
F5 |
T |
C |
1: 164,017,710 (GRCm39) |
S596P |
probably benign |
Het |
Fat4 |
A |
G |
3: 38,946,002 (GRCm39) |
T1632A |
probably benign |
Het |
Gm5070 |
T |
G |
3: 95,317,936 (GRCm39) |
|
noncoding transcript |
Het |
Hps5 |
T |
C |
7: 46,435,994 (GRCm39) |
Y184C |
probably benign |
Het |
Letmd1 |
T |
C |
15: 100,367,128 (GRCm39) |
|
probably null |
Het |
Lipo5 |
A |
T |
19: 33,445,277 (GRCm39) |
N97K |
unknown |
Het |
Mis18bp1 |
A |
T |
12: 65,183,605 (GRCm39) |
Y922* |
probably null |
Het |
Mob3c |
C |
A |
4: 115,690,952 (GRCm39) |
H181N |
probably damaging |
Het |
Muc4 |
A |
T |
16: 32,574,054 (GRCm39) |
T711S |
probably benign |
Het |
Nav3 |
T |
C |
10: 109,602,851 (GRCm39) |
T1233A |
probably benign |
Het |
Or12e8 |
T |
A |
2: 87,188,347 (GRCm39) |
D186E |
probably damaging |
Het |
Or12k8 |
G |
T |
2: 36,975,631 (GRCm39) |
T43N |
possibly damaging |
Het |
Pcnt |
T |
C |
10: 76,225,053 (GRCm39) |
E1817G |
possibly damaging |
Het |
Pgap4 |
A |
G |
4: 49,586,686 (GRCm39) |
Y161H |
probably benign |
Het |
Phc3 |
A |
G |
3: 30,990,858 (GRCm39) |
V420A |
probably damaging |
Het |
Plekhn1 |
A |
T |
4: 156,308,106 (GRCm39) |
C316S |
probably damaging |
Het |
Ppp1cb |
T |
A |
5: 32,640,818 (GRCm39) |
|
probably benign |
Het |
Slc29a4 |
T |
C |
5: 142,704,534 (GRCm39) |
Y359H |
probably damaging |
Het |
Sspo |
T |
C |
6: 48,477,426 (GRCm39) |
I4982T |
probably damaging |
Het |
Sstr4 |
T |
A |
2: 148,238,229 (GRCm39) |
L280Q |
probably damaging |
Het |
Stap1 |
G |
A |
5: 86,225,920 (GRCm39) |
|
probably null |
Het |
Szt2 |
A |
G |
4: 118,247,020 (GRCm39) |
V865A |
possibly damaging |
Het |
Tnr |
T |
A |
1: 159,679,671 (GRCm39) |
V215D |
probably benign |
Het |
Trpm1 |
T |
C |
7: 63,860,613 (GRCm39) |
L288P |
probably damaging |
Het |
Ttll5 |
T |
A |
12: 85,959,319 (GRCm39) |
|
probably benign |
Het |
Usp8 |
T |
C |
2: 126,559,976 (GRCm39) |
|
probably benign |
Het |
Uxs1 |
T |
C |
1: 43,789,446 (GRCm39) |
Y403C |
possibly damaging |
Het |
Wnk2 |
T |
C |
13: 49,244,345 (GRCm39) |
E497G |
probably damaging |
Het |
Xdh |
T |
C |
17: 74,250,890 (GRCm39) |
K21E |
probably benign |
Het |
|
Other mutations in Nherf4 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00861:Nherf4
|
APN |
9 |
44,160,933 (GRCm39) |
missense |
possibly damaging |
0.84 |
IGL01639:Nherf4
|
APN |
9 |
44,159,976 (GRCm39) |
missense |
probably benign |
0.41 |
IGL02502:Nherf4
|
APN |
9 |
44,160,948 (GRCm39) |
missense |
probably benign |
|
IGL03082:Nherf4
|
APN |
9 |
44,162,083 (GRCm39) |
missense |
possibly damaging |
0.65 |
R0543:Nherf4
|
UTSW |
9 |
44,160,231 (GRCm39) |
missense |
probably damaging |
1.00 |
R1180:Nherf4
|
UTSW |
9 |
44,160,543 (GRCm39) |
missense |
probably benign |
0.38 |
R1919:Nherf4
|
UTSW |
9 |
44,161,600 (GRCm39) |
missense |
possibly damaging |
0.83 |
R4019:Nherf4
|
UTSW |
9 |
44,162,117 (GRCm39) |
splice site |
probably null |
|
R4020:Nherf4
|
UTSW |
9 |
44,162,117 (GRCm39) |
splice site |
probably null |
|
R4296:Nherf4
|
UTSW |
9 |
44,160,158 (GRCm39) |
missense |
probably benign |
0.01 |
R4430:Nherf4
|
UTSW |
9 |
44,161,041 (GRCm39) |
missense |
probably benign |
|
R4433:Nherf4
|
UTSW |
9 |
44,159,285 (GRCm39) |
makesense |
probably null |
|
R4567:Nherf4
|
UTSW |
9 |
44,160,323 (GRCm39) |
missense |
possibly damaging |
0.90 |
R4942:Nherf4
|
UTSW |
9 |
44,159,915 (GRCm39) |
nonsense |
probably null |
|
R5436:Nherf4
|
UTSW |
9 |
44,159,652 (GRCm39) |
missense |
possibly damaging |
0.79 |
R6320:Nherf4
|
UTSW |
9 |
44,159,980 (GRCm39) |
missense |
probably benign |
0.00 |
R6688:Nherf4
|
UTSW |
9 |
44,159,527 (GRCm39) |
critical splice donor site |
probably null |
|
R7625:Nherf4
|
UTSW |
9 |
44,161,594 (GRCm39) |
missense |
probably damaging |
1.00 |
R8142:Nherf4
|
UTSW |
9 |
44,162,078 (GRCm39) |
critical splice donor site |
probably null |
|
R8531:Nherf4
|
UTSW |
9 |
44,159,670 (GRCm39) |
missense |
probably damaging |
1.00 |
R8917:Nherf4
|
UTSW |
9 |
44,160,141 (GRCm39) |
unclassified |
probably benign |
|
R9147:Nherf4
|
UTSW |
9 |
44,160,676 (GRCm39) |
missense |
probably damaging |
1.00 |
R9148:Nherf4
|
UTSW |
9 |
44,160,676 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2015-04-16 |