Incidental Mutation 'IGL02850:Col18a1'
ID 361849
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Col18a1
Ensembl Gene ENSMUSG00000001435
Gene Name collagen, type XVIII, alpha 1
Synonyms endostatin
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL02850
Quality Score
Status
Chromosome 10
Chromosomal Location 76888013-77002351 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 76932300 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Asparagine at position 510 (I510N)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072755] [ENSMUST00000081654] [ENSMUST00000105409]
AlphaFold no structure available at present
Predicted Effect unknown
Transcript: ENSMUST00000072755
AA Change: I510N
SMART Domains Protein: ENSMUSP00000072538
Gene: ENSMUSG00000001435
AA Change: I510N

DomainStartEndE-ValueType
Pfam:DUF959 16 218 6.8e-104 PFAM
low complexity region 295 307 N/A INTRINSIC
FRI 369 484 4.03e-47 SMART
TSPN 492 680 4.25e-72 SMART
LamG 541 679 2.17e-2 SMART
low complexity region 699 715 N/A INTRINSIC
low complexity region 719 734 N/A INTRINSIC
low complexity region 739 751 N/A INTRINSIC
Pfam:Collagen 820 881 5.5e-11 PFAM
low complexity region 921 942 N/A INTRINSIC
Pfam:Collagen 951 1008 6.1e-10 PFAM
Pfam:Collagen 988 1053 1.4e-8 PFAM
Pfam:Collagen 1060 1117 7.3e-10 PFAM
low complexity region 1132 1147 N/A INTRINSIC
low complexity region 1166 1181 N/A INTRINSIC
low complexity region 1186 1202 N/A INTRINSIC
Pfam:Collagen 1207 1267 8.2e-10 PFAM
low complexity region 1275 1288 N/A INTRINSIC
low complexity region 1301 1319 N/A INTRINSIC
low complexity region 1358 1393 N/A INTRINSIC
low complexity region 1397 1414 N/A INTRINSIC
low complexity region 1417 1433 N/A INTRINSIC
low complexity region 1441 1454 N/A INTRINSIC
Pfam:Endostatin 1461 1769 4.4e-116 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000081654
AA Change: I51N
SMART Domains Protein: ENSMUSP00000080358
Gene: ENSMUSG00000001435
AA Change: I51N

DomainStartEndE-ValueType
signal peptide 1 25 N/A INTRINSIC
TSPN 33 221 4.25e-72 SMART
LamG 82 220 2.17e-2 SMART
low complexity region 240 256 N/A INTRINSIC
low complexity region 260 275 N/A INTRINSIC
low complexity region 280 292 N/A INTRINSIC
Pfam:Collagen 359 422 1.6e-10 PFAM
low complexity region 462 483 N/A INTRINSIC
Pfam:Collagen 492 549 1.6e-9 PFAM
Pfam:Collagen 529 594 3.3e-8 PFAM
Pfam:Collagen 601 658 1.9e-9 PFAM
Pfam:Collagen 631 689 4e-8 PFAM
Pfam:Collagen 701 752 1.7e-7 PFAM
Pfam:Collagen 748 808 2.2e-9 PFAM
low complexity region 816 829 N/A INTRINSIC
low complexity region 842 860 N/A INTRINSIC
low complexity region 899 934 N/A INTRINSIC
low complexity region 938 955 N/A INTRINSIC
low complexity region 958 974 N/A INTRINSIC
low complexity region 982 995 N/A INTRINSIC
Pfam:Endostatin 999 1315 8.2e-151 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000105409
AA Change: I263N
SMART Domains Protein: ENSMUSP00000101049
Gene: ENSMUSG00000001435
AA Change: I263N

DomainStartEndE-ValueType
Pfam:DUF959 16 219 3.6e-100 PFAM
TSPN 245 433 4.25e-72 SMART
LamG 294 432 2.17e-2 SMART
low complexity region 452 468 N/A INTRINSIC
low complexity region 472 487 N/A INTRINSIC
low complexity region 492 504 N/A INTRINSIC
low complexity region 542 613 N/A INTRINSIC
low complexity region 630 648 N/A INTRINSIC
low complexity region 674 695 N/A INTRINSIC
Pfam:Collagen 700 761 5.4e-9 PFAM
Pfam:Collagen 741 806 4e-8 PFAM
Pfam:Collagen 813 874 2.1e-10 PFAM
Pfam:Collagen 846 901 1.2e-7 PFAM
Pfam:Collagen 913 964 2.1e-7 PFAM
Pfam:Collagen 960 1020 2.6e-9 PFAM
low complexity region 1028 1041 N/A INTRINSIC
low complexity region 1054 1072 N/A INTRINSIC
low complexity region 1111 1146 N/A INTRINSIC
low complexity region 1150 1167 N/A INTRINSIC
low complexity region 1170 1186 N/A INTRINSIC
low complexity region 1194 1207 N/A INTRINSIC
Pfam:Endostatin 1211 1527 1.1e-150 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000149744
AA Change: I510N

PolyPhen 2 Score 0.976 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000116418
Gene: ENSMUSG00000001435
AA Change: I510N

DomainStartEndE-ValueType
Pfam:DUF959 16 219 1.6e-101 PFAM
low complexity region 295 307 N/A INTRINSIC
FRI 369 484 4.03e-47 SMART
Blast:TSPN 492 562 2e-40 BLAST
SCOP:d1saca_ 515 562 6e-5 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the alpha chain of type XVIII collagen. This collagen is one of the multiplexins, extracellular matrix proteins that contain multiple triple-helix domains (collagenous domains) interrupted by non-collagenous domains. A long isoform of the protein has an N-terminal domain that is homologous to the extracellular part of frizzled receptors. Proteolytic processing at several endogenous cleavage sites in the C-terminal domain results in production of endostatin, a potent antiangiogenic protein that is able to inhibit angiogenesis and tumor growth. Mutations in this gene are associated with Knobloch syndrome. The main features of this syndrome involve retinal abnormalities, so type XVIII collagen may play an important role in retinal structure and in neural tube closure. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit defects in hyaloid vessel regression, attenuated visual function, abnormal electroretinograms, broad proximal tubule basement membrane, podocyte effacement, and softened glomeruli. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 58 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2fm1 A G 3: 59,843,993 (GRCm39) Y229C probably damaging Het
Adgrd1 A G 5: 129,192,119 (GRCm39) D63G probably damaging Het
Ahnak A G 19: 8,979,960 (GRCm39) T415A probably benign Het
Antxr2 A G 5: 98,151,937 (GRCm39) V178A probably damaging Het
Ap1s1 A G 5: 137,070,634 (GRCm39) Y127H possibly damaging Het
Bbs2 A T 8: 94,803,710 (GRCm39) M510K probably benign Het
Cbfa2t2 A G 2: 154,377,090 (GRCm39) N591S probably damaging Het
Chd6 T A 2: 160,861,536 (GRCm39) R504* probably null Het
Cnpy3 A G 17: 47,054,217 (GRCm39) probably benign Het
Cntn2 T G 1: 132,446,114 (GRCm39) K824T probably benign Het
Cntnap3 T C 13: 64,905,223 (GRCm39) T853A probably damaging Het
Cog4 G A 8: 111,593,221 (GRCm39) G444D possibly damaging Het
Cxcr5 G A 9: 44,425,403 (GRCm39) R85W probably damaging Het
Cyth3 C A 5: 143,672,259 (GRCm39) T58K probably damaging Het
Dio3 T C 12: 110,245,970 (GRCm39) V102A probably damaging Het
Dmbx1 G A 4: 115,775,204 (GRCm39) R359C probably damaging Het
Fam3d C T 14: 8,361,475 (GRCm38) probably null Het
Fras1 C A 5: 96,926,034 (GRCm39) P3746Q probably damaging Het
Glt1d1 T A 5: 127,721,409 (GRCm39) M32K probably benign Het
Hunk A G 16: 90,229,460 (GRCm39) N31S probably damaging Het
Ints11 T C 4: 155,959,761 (GRCm39) S123P probably benign Het
Izumo2 T C 7: 44,358,339 (GRCm39) L58S probably damaging Het
Izumo4 A G 10: 80,540,032 (GRCm39) probably benign Het
Kcnh7 T A 2: 62,618,029 (GRCm39) K487* probably null Het
Lrp12 T C 15: 39,741,971 (GRCm39) Y248C probably damaging Het
Maco1 T C 4: 134,555,697 (GRCm39) K259E probably benign Het
Map3k4 T C 17: 12,490,801 (GRCm39) D210G probably damaging Het
Mast4 T C 13: 102,890,740 (GRCm39) D1038G probably damaging Het
Noa1 T C 5: 77,442,338 (GRCm39) T651A probably benign Het
Nop2 A C 6: 125,121,048 (GRCm39) K610T possibly damaging Het
Nop2 G T 6: 125,121,033 (GRCm39) G605V probably benign Het
Npvf G A 6: 50,629,670 (GRCm39) R107W probably benign Het
Or10ad1b A G 15: 98,125,232 (GRCm39) V98A probably benign Het
Or2h2c T C 17: 37,422,865 (GRCm39) N3S probably benign Het
Oxr1 A G 15: 41,718,329 (GRCm39) T775A probably damaging Het
P2ry13 C T 3: 59,117,029 (GRCm39) A250T probably damaging Het
Pcsk9 A T 4: 106,316,062 (GRCm39) V127E probably damaging Het
Piezo2 G A 18: 63,153,704 (GRCm39) S2547F probably benign Het
Pinx1 A G 14: 64,156,609 (GRCm39) T179A probably damaging Het
Pjvk T C 2: 76,488,795 (GRCm39) V322A possibly damaging Het
Pla2r1 T A 2: 60,332,413 (GRCm39) R476S probably benign Het
Polb A G 8: 23,138,277 (GRCm39) probably benign Het
Polg2 C T 11: 106,659,293 (GRCm39) D407N probably damaging Het
Pou5f2 G A 13: 78,173,178 (GRCm39) R40Q probably benign Het
Sctr T C 1: 119,972,393 (GRCm39) M193T possibly damaging Het
Sctr T A 1: 119,949,909 (GRCm39) C33S probably damaging Het
Sema5b T C 16: 35,480,885 (GRCm39) S819P probably benign Het
Setd1b C T 5: 123,286,652 (GRCm39) T566I unknown Het
Sptbn4 G A 7: 27,126,258 (GRCm39) R222C possibly damaging Het
Taf5l A G 8: 124,730,197 (GRCm39) V129A possibly damaging Het
Tmem163 C T 1: 127,427,984 (GRCm39) V201I probably benign Het
Ube3b T C 5: 114,544,310 (GRCm39) L569P probably damaging Het
Vwa3a A G 7: 120,372,515 (GRCm39) E301G probably benign Het
Wnk1 T C 6: 119,914,823 (GRCm39) I1660V probably benign Het
Zbtb22 T A 17: 34,135,987 (GRCm39) L44Q probably damaging Het
Zfp691 T C 4: 119,027,389 (GRCm39) D281G probably damaging Het
Zfy2 C T Y: 2,106,894 (GRCm39) G580D probably benign Het
Zfy2 T A Y: 2,117,188 (GRCm39) H213L probably benign Het
Other mutations in Col18a1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00952:Col18a1 APN 10 76,905,813 (GRCm39) missense possibly damaging 0.93
IGL01023:Col18a1 APN 10 76,906,809 (GRCm39) missense probably damaging 0.98
IGL01304:Col18a1 APN 10 76,911,975 (GRCm39) unclassified probably benign
IGL01519:Col18a1 APN 10 76,895,157 (GRCm39) missense probably damaging 0.99
IGL02217:Col18a1 APN 10 76,889,132 (GRCm39) missense probably damaging 0.96
IGL02275:Col18a1 APN 10 76,895,217 (GRCm39) missense possibly damaging 0.92
IGL02283:Col18a1 APN 10 76,948,943 (GRCm39) missense possibly damaging 0.71
IGL02492:Col18a1 APN 10 76,907,855 (GRCm39) splice site probably benign
IGL02673:Col18a1 APN 10 76,894,997 (GRCm39) missense probably damaging 1.00
IGL02710:Col18a1 APN 10 76,949,146 (GRCm39) missense possibly damaging 0.92
IGL03085:Col18a1 APN 10 76,895,015 (GRCm39) splice site probably benign
IGL03102:Col18a1 APN 10 76,903,457 (GRCm39) splice site probably benign
IGL03139:Col18a1 APN 10 76,949,177 (GRCm39) missense possibly damaging 0.84
IGL03181:Col18a1 APN 10 76,891,532 (GRCm39) missense probably damaging 1.00
IGL03183:Col18a1 APN 10 76,909,588 (GRCm39) missense probably damaging 1.00
R0039:Col18a1 UTSW 10 76,913,002 (GRCm39) missense probably damaging 1.00
R0180:Col18a1 UTSW 10 76,932,351 (GRCm39) missense probably benign 0.33
R0225:Col18a1 UTSW 10 76,924,748 (GRCm39) missense possibly damaging 0.90
R0335:Col18a1 UTSW 10 76,895,197 (GRCm39) missense probably damaging 0.99
R0336:Col18a1 UTSW 10 76,894,570 (GRCm39) missense probably damaging 1.00
R1471:Col18a1 UTSW 10 76,932,040 (GRCm39) missense unknown
R1538:Col18a1 UTSW 10 76,907,170 (GRCm39) missense probably damaging 1.00
R1594:Col18a1 UTSW 10 76,948,870 (GRCm39) missense possibly damaging 0.51
R1631:Col18a1 UTSW 10 76,895,131 (GRCm39) missense probably damaging 0.99
R1774:Col18a1 UTSW 10 76,895,815 (GRCm39) missense probably damaging 0.96
R1934:Col18a1 UTSW 10 76,948,578 (GRCm39) missense possibly damaging 0.73
R1990:Col18a1 UTSW 10 76,916,988 (GRCm39) missense unknown
R1991:Col18a1 UTSW 10 76,916,988 (GRCm39) missense unknown
R1992:Col18a1 UTSW 10 76,916,988 (GRCm39) missense unknown
R2081:Col18a1 UTSW 10 76,890,019 (GRCm39) missense probably damaging 1.00
R2082:Col18a1 UTSW 10 76,895,127 (GRCm39) missense probably damaging 1.00
R2351:Col18a1 UTSW 10 76,948,538 (GRCm39) missense probably benign 0.00
R2510:Col18a1 UTSW 10 76,932,102 (GRCm39) missense unknown
R3076:Col18a1 UTSW 10 76,924,762 (GRCm39) missense possibly damaging 0.57
R3433:Col18a1 UTSW 10 76,932,102 (GRCm39) missense unknown
R3800:Col18a1 UTSW 10 76,903,221 (GRCm39) nonsense probably null
R3918:Col18a1 UTSW 10 76,889,192 (GRCm39) missense probably benign 0.05
R3981:Col18a1 UTSW 10 76,924,721 (GRCm39) missense probably damaging 0.99
R3983:Col18a1 UTSW 10 76,924,721 (GRCm39) missense probably damaging 0.99
R4182:Col18a1 UTSW 10 76,894,675 (GRCm39) splice site probably null
R4239:Col18a1 UTSW 10 76,932,001 (GRCm39) missense unknown
R5014:Col18a1 UTSW 10 76,906,794 (GRCm39) critical splice donor site probably null
R5107:Col18a1 UTSW 10 76,913,057 (GRCm39) critical splice acceptor site probably null
R5413:Col18a1 UTSW 10 76,905,310 (GRCm39) missense probably damaging 1.00
R5503:Col18a1 UTSW 10 76,907,454 (GRCm39) missense probably damaging 1.00
R5524:Col18a1 UTSW 10 76,894,558 (GRCm39) missense probably damaging 1.00
R5772:Col18a1 UTSW 10 77,002,177 (GRCm39) missense unknown
R5958:Col18a1 UTSW 10 76,932,231 (GRCm39) missense probably benign 0.01
R6280:Col18a1 UTSW 10 76,948,323 (GRCm39) intron probably benign
R6309:Col18a1 UTSW 10 76,948,576 (GRCm39) intron probably benign
R6603:Col18a1 UTSW 10 76,899,811 (GRCm39) critical splice donor site probably null
R6608:Col18a1 UTSW 10 76,948,628 (GRCm39) intron probably benign
R6805:Col18a1 UTSW 10 76,890,073 (GRCm39) missense probably damaging 1.00
R6890:Col18a1 UTSW 10 76,949,318 (GRCm39) intron probably benign
R6938:Col18a1 UTSW 10 76,948,333 (GRCm39) intron probably benign
R7002:Col18a1 UTSW 10 77,002,177 (GRCm39) missense unknown
R7154:Col18a1 UTSW 10 76,908,799 (GRCm39) missense probably benign 0.25
R7204:Col18a1 UTSW 10 76,921,110 (GRCm39) missense unknown
R7278:Col18a1 UTSW 10 76,932,118 (GRCm39) missense unknown
R7442:Col18a1 UTSW 10 76,932,072 (GRCm39) missense unknown
R7453:Col18a1 UTSW 10 76,921,044 (GRCm39) splice site probably null
R7597:Col18a1 UTSW 10 76,949,137 (GRCm39) missense unknown
R7615:Col18a1 UTSW 10 76,902,839 (GRCm39) missense probably damaging 1.00
R7671:Col18a1 UTSW 10 76,921,217 (GRCm39) missense unknown
R7696:Col18a1 UTSW 10 76,921,106 (GRCm39) missense unknown
R7719:Col18a1 UTSW 10 76,913,846 (GRCm39) missense probably benign 0.13
R7772:Col18a1 UTSW 10 76,904,220 (GRCm39) splice site probably null
R8077:Col18a1 UTSW 10 76,916,685 (GRCm39) missense unknown
R8085:Col18a1 UTSW 10 76,924,741 (GRCm39) missense unknown
R8097:Col18a1 UTSW 10 76,948,342 (GRCm39) missense unknown
R8117:Col18a1 UTSW 10 76,895,808 (GRCm39) missense probably benign 0.41
R8130:Col18a1 UTSW 10 76,910,284 (GRCm39) missense probably benign 0.03
R8151:Col18a1 UTSW 10 76,948,418 (GRCm39) missense unknown
R8379:Col18a1 UTSW 10 76,889,072 (GRCm39) missense probably benign 0.08
R8479:Col18a1 UTSW 10 76,916,988 (GRCm39) missense unknown
R8523:Col18a1 UTSW 10 76,890,068 (GRCm39) missense probably damaging 0.99
R8862:Col18a1 UTSW 10 76,949,044 (GRCm39) nonsense probably null
R9109:Col18a1 UTSW 10 76,893,204 (GRCm39) missense probably damaging 1.00
R9298:Col18a1 UTSW 10 76,893,204 (GRCm39) missense probably damaging 1.00
R9312:Col18a1 UTSW 10 76,894,606 (GRCm39) missense probably damaging 0.98
R9366:Col18a1 UTSW 10 76,932,258 (GRCm39) missense unknown
R9399:Col18a1 UTSW 10 76,916,584 (GRCm39) missense unknown
R9559:Col18a1 UTSW 10 76,913,630 (GRCm39) missense probably damaging 1.00
R9649:Col18a1 UTSW 10 76,916,673 (GRCm39) missense unknown
R9689:Col18a1 UTSW 10 76,916,578 (GRCm39) nonsense probably null
R9719:Col18a1 UTSW 10 76,949,432 (GRCm39) missense unknown
Z1176:Col18a1 UTSW 10 76,948,685 (GRCm39) missense unknown
Z1176:Col18a1 UTSW 10 76,891,543 (GRCm39) missense possibly damaging 0.81
Z1177:Col18a1 UTSW 10 76,948,672 (GRCm39) missense unknown
Posted On 2015-12-18