Mutagenetix > Incidental Mutation

Incidental Mutation 'R7854:Vmn1r200'

607148

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r200

Ensembl Gene

ENSMUSG00000101073

Gene Name

vomeronasal 1 receptor 200

Synonyms

V1rh3

MMRRC Submission

045907-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.144) question?

Stock #

R7854 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

22579199-22580137 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 22580009 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 271 (F271L)

Ref Sequence

ENSEMBL: ENSMUSP00000073934 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074324] [ENSMUST00000226157] [ENSMUST00000227326] [ENSMUST00000228726]

AlphaFold

Q8R281

Predicted Effect

probably benign
Transcript: ENSMUST00000074324
AA Change: F271L

PolyPhen 2 Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000073934
Gene: ENSMUSG00000101073
AA Change: F271L

Domain	Start	End	E-Value	Type
Pfam:V1R	24	307	5.5e-36	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000226157
AA Change: F271L

PolyPhen 2 Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)

Predicted Effect

probably benign
Transcript: ENSMUST00000227326
AA Change: F262L

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

Predicted Effect

probably benign
Transcript: ENSMUST00000228726
AA Change: F271L

PolyPhen 2 Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

98% (51/52)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	T	A	13: 81,741,207 (GRCm39)	I86F	probably damaging	Het
Als2cl	A	G	9: 110,727,564 (GRCm39)	*953W	probably null	Het
Ap1g2	A	G	14: 55,343,390 (GRCm39)	F66L	probably damaging	Het
Aqp12	T	G	1: 92,934,176 (GRCm39)	C18G	probably damaging	Het
Atp9a	T	C	2: 168,490,523 (GRCm39)	I826V	probably benign	Het
C1ra	A	G	6: 124,494,700 (GRCm39)	Q321R	probably benign	Het
Calcoco1	T	C	15: 102,627,991 (GRCm39)	I48V	possibly damaging	Het
Cep63	A	T	9: 102,480,197 (GRCm39)	S269R	probably damaging	Het
Chchd7	T	C	4: 3,943,422 (GRCm39)	V63A	possibly damaging	Het
Dennd5b	T	C	6: 148,969,964 (GRCm39)	D163G	probably benign	Het
Dpep2	T	C	8: 106,716,160 (GRCm39)	D251G		Het
Ercc6	T	C	14: 32,288,249 (GRCm39)	L807P	probably damaging	Het
Fads6	A	T	11: 115,188,222 (GRCm39)	D27E	probably benign	Het
Gfer	C	A	17: 24,913,259 (GRCm39)	D198Y	probably damaging	Het
Glce	A	T	9: 61,977,773 (GRCm39)	I37N	probably benign	Het
Gps2	T	C	11: 69,806,030 (GRCm39)	L128P	probably damaging	Het
Gramd2b	A	G	18: 56,611,926 (GRCm39)	T130A	probably damaging	Het
Hectd4	T	A	5: 121,467,631 (GRCm39)	Y2527N	probably benign	Het
Itpr1	A	G	6: 108,364,330 (GRCm39)	D820G	probably damaging	Het
Itsn2	T	C	12: 4,751,276 (GRCm39)	Y1289H	probably damaging	Het
Kcnh6	A	T	11: 105,908,172 (GRCm39)	I263F	probably damaging	Het
Kcns2	A	T	15: 34,839,917 (GRCm39)	M427L	probably benign	Het
Mptx1	A	T	1: 174,159,966 (GRCm39)	M91L	probably benign	Het
Ms4a20	T	A	19: 11,089,741 (GRCm39)	Y48F	probably benign	Het
Mtx2	A	G	2: 74,699,231 (GRCm39)	Y128C	probably damaging	Het
Myh9	A	T	15: 77,675,953 (GRCm39)	D244E	probably benign	Het
Ndufs2	T	C	1: 171,066,938 (GRCm39)	D140G	probably damaging	Het
Obscn	T	C	11: 58,981,538 (GRCm39)	T1827A	probably benign	Het
Ogn	A	T	13: 49,774,514 (GRCm39)	Y219F	possibly damaging	Het
Or1ak2	A	G	2: 36,828,036 (GRCm39)	R302G	probably benign	Het
Or51f2	C	T	7: 102,526,992 (GRCm39)	R222*	probably null	Het
Parp4	A	G	14: 56,896,805 (GRCm39)	E1943G	unknown	Het
Pex19	T	G	1: 171,954,417 (GRCm39)		probably null	Het
Prss53	T	C	7: 127,488,117 (GRCm39)	N166S	probably benign	Het
Prx	T	A	7: 27,216,066 (GRCm39)	V328E	probably damaging	Het
Pstpip2	C	T	18: 77,962,004 (GRCm39)	T258I	probably benign	Het
Rasgrp4	C	T	7: 28,850,035 (GRCm39)	P58L	unknown	Het
Ros1	T	C	10: 52,004,563 (GRCm39)	Y1019C	probably damaging	Het
Rptor	T	C	11: 119,748,779 (GRCm39)	M787T	probably benign	Het
Rsf1	GGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGC	7: 97,229,131 (GRCm39)		probably benign	Het
Spef2	T	A	15: 9,596,730 (GRCm39)	R1440W	possibly damaging	Het
Spta1	T	A	1: 174,046,396 (GRCm39)		probably null	Het
Sptbn4	T	C	7: 27,061,835 (GRCm39)	I2335V	probably benign	Het
Srp68	G	C	11: 116,144,909 (GRCm39)		probably null	Het
Taar1	A	G	10: 23,796,680 (GRCm39)	D126G	probably benign	Het
Tdrd9	A	G	12: 112,013,395 (GRCm39)	T1210A	probably benign	Het
Tle5	A	G	10: 81,401,481 (GRCm39)	H183R	probably damaging	Het
Tpcn1	A	G	5: 120,687,653 (GRCm39)	F364L	probably damaging	Het
Trav2	A	T	14: 52,805,238 (GRCm39)	K20*	probably null	Het
Trpa1	T	C	1: 14,951,918 (GRCm39)	E927G	probably benign	Het
Tyk2	A	T	9: 21,026,776 (GRCm39)	D637E	probably benign	Het
Vmn1r231	T	A	17: 21,110,894 (GRCm39)	D7V	probably damaging	Het
Wwc2	G	A	8: 48,321,512 (GRCm39)	T534I	unknown	Het

Other mutations in Vmn1r200

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00970:Vmn1r200	APN	13	22,579,893 (GRCm39)	missense	probably damaging	1.00
IGL01123:Vmn1r200	APN	13	22,579,571 (GRCm39)	missense	probably benign	0.01
IGL01943:Vmn1r200	APN	13	22,580,097 (GRCm39)	missense	possibly damaging	0.77
IGL02691:Vmn1r200	APN	13	22,579,428 (GRCm39)	missense	probably damaging	1.00
R0491:Vmn1r200	UTSW	13	22,579,361 (GRCm39)	missense	probably benign	0.00
R0507:Vmn1r200	UTSW	13	22,579,718 (GRCm39)	missense	probably benign	0.00
R0530:Vmn1r200	UTSW	13	22,579,667 (GRCm39)	missense	probably damaging	1.00
R1033:Vmn1r200	UTSW	13	22,580,060 (GRCm39)	missense	probably damaging	1.00
R1054:Vmn1r200	UTSW	13	22,579,624 (GRCm39)	missense	probably damaging	1.00
R1714:Vmn1r200	UTSW	13	22,579,640 (GRCm39)	missense	possibly damaging	0.96
R1920:Vmn1r200	UTSW	13	22,579,663 (GRCm39)	missense	probably damaging	1.00
R2118:Vmn1r200	UTSW	13	22,579,353 (GRCm39)	missense	probably damaging	1.00
R3784:Vmn1r200	UTSW	13	22,580,025 (GRCm39)	missense	possibly damaging	0.82
R4827:Vmn1r200	UTSW	13	22,579,265 (GRCm39)	missense	probably benign	0.00
R5285:Vmn1r200	UTSW	13	22,579,457 (GRCm39)	missense	possibly damaging	0.51
R5299:Vmn1r200	UTSW	13	22,579,945 (GRCm39)	nonsense	probably null
R6127:Vmn1r200	UTSW	13	22,579,373 (GRCm39)	missense	probably benign	0.07
R7167:Vmn1r200	UTSW	13	22,579,487 (GRCm39)	missense	possibly damaging	0.91
R7977:Vmn1r200	UTSW	13	22,580,025 (GRCm39)	missense	possibly damaging	0.82
R7987:Vmn1r200	UTSW	13	22,580,025 (GRCm39)	missense	possibly damaging	0.82
R8061:Vmn1r200	UTSW	13	22,579,453 (GRCm39)	nonsense	probably null
R8208:Vmn1r200	UTSW	13	22,579,470 (GRCm39)	missense	probably damaging	0.99
R9481:Vmn1r200	UTSW	13	22,579,911 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAGTGTTTCAGAGTGCCCTG -3'
(R):5'- GGAACTTTGTCTTACCCACAATAC -3'

Sequencing Primer
(F):5'- GCCAGTGGCTACATGATATTTC -3'
(R):5'- CTGAACAACTGAGTTTACTCTGACAC -3'

Posted On

2019-12-20