Incidental Mutation 'R8549:4930562C15Rik'
| ID |
659792 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
4930562C15Rik
|
| Ensembl Gene |
ENSMUSG00000022518 |
| Gene Name |
RIKEN cDNA 4930562C15 gene |
| Synonyms |
|
| MMRRC Submission |
068514-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.082)
|
| Stock # |
R8549 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
16 |
| Chromosomal Location |
4653280-4685550 bp(+) (GRCm39) |
| Type of Mutation |
critical splice donor site (2 bp from exon) |
| DNA Base Change (assembly) |
T to C
at 4681061 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000127814
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000100211]
[ENSMUST00000171105]
[ENSMUST00000176394]
[ENSMUST00000176982]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably null
Transcript: ENSMUST00000100211
|
| SMART Domains |
Protein: ENSMUSP00000097784
Gene: ENSMUSG00000022518
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
74 |
101 |
N/A |
INTRINSIC |
|
coiled coil region
|
181 |
211 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
289 |
315 |
2.54e-5 |
PROSPERO |
|
internal_repeat_1
|
314 |
341 |
2.54e-5 |
PROSPERO |
|
low complexity region
|
360 |
377 |
N/A |
INTRINSIC |
|
low complexity region
|
402 |
424 |
N/A |
INTRINSIC |
|
low complexity region
|
452 |
469 |
N/A |
INTRINSIC |
|
low complexity region
|
573 |
604 |
N/A |
INTRINSIC |
|
low complexity region
|
616 |
627 |
N/A |
INTRINSIC |
|
low complexity region
|
630 |
647 |
N/A |
INTRINSIC |
|
low complexity region
|
652 |
672 |
N/A |
INTRINSIC |
|
Pfam:DUF4795
|
745 |
960 |
1.7e-46 |
PFAM |
|
low complexity region
|
1095 |
1109 |
N/A |
INTRINSIC |
|
low complexity region
|
1111 |
1125 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000171105
|
| SMART Domains |
Protein: ENSMUSP00000127814
Gene: ENSMUSG00000022518
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF4795
|
37 |
125 |
1.1e-20 |
PFAM |
|
low complexity region
|
256 |
270 |
N/A |
INTRINSIC |
|
low complexity region
|
272 |
286 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000175762
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000176394
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000176982
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.6%
- 20x: 98.7%
|
| Validation Efficiency |
100% (45/45) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Aadacl4 |
G |
A |
4: 144,349,726 (GRCm39) |
V328I |
probably benign |
Het |
| Adcy7 |
A |
T |
8: 89,052,818 (GRCm39) |
H968L |
probably benign |
Het |
| Ahnak |
G |
A |
19: 8,988,847 (GRCm39) |
G3377E |
probably damaging |
Het |
| Ank3 |
A |
G |
10: 69,818,012 (GRCm39) |
T56A |
possibly damaging |
Het |
| Anpep |
A |
G |
7: 79,490,644 (GRCm39) |
S291P |
probably benign |
Het |
| Arap3 |
G |
A |
18: 38,106,365 (GRCm39) |
P1493S |
probably benign |
Het |
| Bsn |
G |
A |
9: 107,988,651 (GRCm39) |
A2367V |
probably benign |
Het |
| C1rb |
T |
C |
6: 124,551,498 (GRCm39) |
Y203H |
probably benign |
Het |
| Caprin1 |
G |
T |
2: 103,599,862 (GRCm39) |
N604K |
probably damaging |
Het |
| Chrd |
A |
G |
16: 20,560,027 (GRCm39) |
E898G |
probably benign |
Het |
| Cobll1 |
T |
C |
2: 64,928,794 (GRCm39) |
D881G |
probably damaging |
Het |
| Cyp39a1 |
T |
A |
17: 44,041,886 (GRCm39) |
D364E |
possibly damaging |
Het |
| Defb33 |
G |
A |
8: 21,387,594 (GRCm39) |
G44R |
probably damaging |
Het |
| Efcab3 |
A |
T |
11: 104,890,521 (GRCm39) |
E4201V |
probably damaging |
Het |
| Ehhadh |
A |
T |
16: 21,585,168 (GRCm39) |
S238T |
probably benign |
Het |
| Eif5b |
G |
A |
1: 38,076,288 (GRCm39) |
R612Q |
possibly damaging |
Het |
| Eps8l1 |
G |
T |
7: 4,473,853 (GRCm39) |
R220L |
probably damaging |
Het |
| Frmd8 |
A |
G |
19: 5,919,565 (GRCm39) |
Y161H |
possibly damaging |
Het |
| Gad2 |
T |
A |
2: 22,525,059 (GRCm39) |
|
probably null |
Het |
| Gm4553 |
ACCCTTGCAGCCACCACAGGAGCCACAGCCCCCACAGGAGCTACAGCCTCCCTTGCAGCCACCACAGGAGCCACAGCCCCCACAGGAGCTACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCC |
ACCCTTGCAGCCACCACAGGAGCCACAGCCCCCACAGGAGCTACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCC |
7: 141,719,157 (GRCm39) |
|
probably benign |
Het |
| Gm5460 |
T |
C |
14: 33,758,892 (GRCm39) |
F184L |
possibly damaging |
Het |
| Grip2 |
C |
A |
6: 91,750,769 (GRCm39) |
|
probably null |
Het |
| Hrh4 |
T |
C |
18: 13,155,115 (GRCm39) |
F218S |
possibly damaging |
Het |
| Ippk |
T |
C |
13: 49,615,177 (GRCm39) |
V520A |
probably benign |
Het |
| Kif15 |
T |
A |
9: 122,815,236 (GRCm39) |
Y189N |
probably benign |
Het |
| Kif9 |
T |
G |
9: 110,343,487 (GRCm39) |
|
probably null |
Het |
| L1td1 |
T |
C |
4: 98,626,280 (GRCm39) |
F825S |
probably damaging |
Het |
| Mcm6 |
C |
T |
1: 128,273,685 (GRCm39) |
E382K |
possibly damaging |
Het |
| Nalcn |
T |
C |
14: 123,607,448 (GRCm39) |
T674A |
probably benign |
Het |
| Nbeal1 |
G |
A |
1: 60,274,721 (GRCm39) |
|
probably null |
Het |
| Nip7 |
C |
A |
8: 107,784,605 (GRCm39) |
|
probably null |
Het |
| Npc1l1 |
A |
G |
11: 6,168,675 (GRCm39) |
F902S |
probably damaging |
Het |
| Or4k48 |
C |
T |
2: 111,479,512 (GRCm39) |
|
probably benign |
Het |
| Pcdha6 |
T |
G |
18: 37,101,594 (GRCm39) |
I262M |
possibly damaging |
Het |
| Pcdhga1 |
T |
A |
18: 37,966,386 (GRCm39) |
*56R |
probably null |
Het |
| Plcb1 |
A |
G |
2: 135,206,853 (GRCm39) |
Y959C |
probably benign |
Het |
| Rnase9 |
T |
A |
14: 51,276,448 (GRCm39) |
I177L |
probably benign |
Het |
| Rtn3 |
T |
C |
19: 7,434,624 (GRCm39) |
N437S |
probably benign |
Het |
| Rufy3 |
T |
A |
5: 88,795,073 (GRCm39) |
|
probably null |
Het |
| Snx29 |
T |
C |
16: 11,532,920 (GRCm39) |
|
probably null |
Het |
| Szt2 |
C |
A |
4: 118,229,878 (GRCm39) |
R2751L |
unknown |
Het |
| Tagap |
A |
G |
17: 8,152,797 (GRCm39) |
T661A |
probably benign |
Het |
| Tcp10b |
T |
A |
17: 13,281,915 (GRCm39) |
I95K |
probably benign |
Het |
| Topbp1 |
T |
C |
9: 103,201,577 (GRCm39) |
F637L |
probably damaging |
Het |
| Yju2b |
A |
T |
8: 84,985,399 (GRCm39) |
V290E |
probably benign |
Het |
| Zfp41 |
C |
T |
15: 75,490,540 (GRCm39) |
T164M |
probably benign |
Het |
| Zfp707 |
T |
A |
15: 75,846,547 (GRCm39) |
I126N |
probably benign |
Het |
| Zfp957 |
T |
C |
14: 79,451,346 (GRCm39) |
E151G |
probably damaging |
Het |
|
| Other mutations in 4930562C15Rik |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00936:4930562C15Rik
|
APN |
16 |
4,682,510 (GRCm39) |
missense |
probably benign |
0.31 |
|
IGL01610:4930562C15Rik
|
APN |
16 |
4,669,429 (GRCm39) |
splice site |
probably benign |
|
|
IGL02869:4930562C15Rik
|
APN |
16 |
4,685,323 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
IGL03242:4930562C15Rik
|
APN |
16 |
4,667,189 (GRCm39) |
missense |
unknown |
|
|
R0063:4930562C15Rik
|
UTSW |
16 |
4,678,912 (GRCm39) |
nonsense |
probably null |
|
|
R0063:4930562C15Rik
|
UTSW |
16 |
4,678,912 (GRCm39) |
nonsense |
probably null |
|
|
R0083:4930562C15Rik
|
UTSW |
16 |
4,667,406 (GRCm39) |
missense |
unknown |
|
|
R0565:4930562C15Rik
|
UTSW |
16 |
4,682,200 (GRCm39) |
missense |
probably benign |
0.22 |
|
R0630:4930562C15Rik
|
UTSW |
16 |
4,668,803 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R0734:4930562C15Rik
|
UTSW |
16 |
4,668,198 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1200:4930562C15Rik
|
UTSW |
16 |
4,667,536 (GRCm39) |
missense |
unknown |
|
|
R1738:4930562C15Rik
|
UTSW |
16 |
4,682,475 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1775:4930562C15Rik
|
UTSW |
16 |
4,669,422 (GRCm39) |
splice site |
probably null |
|
|
R1945:4930562C15Rik
|
UTSW |
16 |
4,653,549 (GRCm39) |
missense |
unknown |
|
|
R2132:4930562C15Rik
|
UTSW |
16 |
4,653,835 (GRCm39) |
missense |
unknown |
|
|
R2445:4930562C15Rik
|
UTSW |
16 |
4,682,261 (GRCm39) |
splice site |
probably null |
|
|
R2696:4930562C15Rik
|
UTSW |
16 |
4,668,228 (GRCm39) |
missense |
probably benign |
0.04 |
|
R4729:4930562C15Rik
|
UTSW |
16 |
4,667,187 (GRCm39) |
missense |
unknown |
|
|
R4779:4930562C15Rik
|
UTSW |
16 |
4,667,613 (GRCm39) |
missense |
unknown |
|
|
R4806:4930562C15Rik
|
UTSW |
16 |
4,667,536 (GRCm39) |
missense |
unknown |
|
|
R4808:4930562C15Rik
|
UTSW |
16 |
4,667,536 (GRCm39) |
missense |
unknown |
|
|
R4876:4930562C15Rik
|
UTSW |
16 |
4,667,536 (GRCm39) |
missense |
unknown |
|
|
R4931:4930562C15Rik
|
UTSW |
16 |
4,678,910 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R4956:4930562C15Rik
|
UTSW |
16 |
4,672,816 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5085:4930562C15Rik
|
UTSW |
16 |
4,653,837 (GRCm39) |
nonsense |
probably null |
|
|
R5203:4930562C15Rik
|
UTSW |
16 |
4,653,462 (GRCm39) |
missense |
unknown |
|
|
R5229:4930562C15Rik
|
UTSW |
16 |
4,667,915 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R5461:4930562C15Rik
|
UTSW |
16 |
4,682,227 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5462:4930562C15Rik
|
UTSW |
16 |
4,682,227 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5464:4930562C15Rik
|
UTSW |
16 |
4,682,227 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5595:4930562C15Rik
|
UTSW |
16 |
4,682,143 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6054:4930562C15Rik
|
UTSW |
16 |
4,653,729 (GRCm39) |
missense |
unknown |
|
|
R6405:4930562C15Rik
|
UTSW |
16 |
4,669,742 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6859:4930562C15Rik
|
UTSW |
16 |
4,669,799 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R7124:4930562C15Rik
|
UTSW |
16 |
4,682,196 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7139:4930562C15Rik
|
UTSW |
16 |
4,668,048 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7182:4930562C15Rik
|
UTSW |
16 |
4,667,578 (GRCm39) |
missense |
unknown |
|
|
R7219:4930562C15Rik
|
UTSW |
16 |
4,667,508 (GRCm39) |
missense |
unknown |
|
|
R7366:4930562C15Rik
|
UTSW |
16 |
4,653,633 (GRCm39) |
missense |
unknown |
|
|
R7592:4930562C15Rik
|
UTSW |
16 |
4,667,138 (GRCm39) |
missense |
unknown |
|
|
R7759:4930562C15Rik
|
UTSW |
16 |
4,682,514 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7789:4930562C15Rik
|
UTSW |
16 |
4,682,175 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7873:4930562C15Rik
|
UTSW |
16 |
4,684,091 (GRCm39) |
missense |
probably benign |
|
|
R7916:4930562C15Rik
|
UTSW |
16 |
4,682,454 (GRCm39) |
nonsense |
probably null |
|
|
R8093:4930562C15Rik
|
UTSW |
16 |
4,669,368 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R8169:4930562C15Rik
|
UTSW |
16 |
4,684,082 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8278:4930562C15Rik
|
UTSW |
16 |
4,668,040 (GRCm39) |
missense |
probably benign |
0.33 |
|
R8372:4930562C15Rik
|
UTSW |
16 |
4,682,152 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8493:4930562C15Rik
|
UTSW |
16 |
4,653,453 (GRCm39) |
start codon destroyed |
unknown |
|
|
R8947:4930562C15Rik
|
UTSW |
16 |
4,665,292 (GRCm39) |
missense |
unknown |
|
|
R9137:4930562C15Rik
|
UTSW |
16 |
4,685,312 (GRCm39) |
missense |
probably benign |
|
|
R9339:4930562C15Rik
|
UTSW |
16 |
4,667,521 (GRCm39) |
missense |
unknown |
|
|
R9422:4930562C15Rik
|
UTSW |
16 |
4,667,153 (GRCm39) |
missense |
|
|
|
R9561:4930562C15Rik
|
UTSW |
16 |
4,680,980 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R9618:4930562C15Rik
|
UTSW |
16 |
4,667,418 (GRCm39) |
missense |
unknown |
|
|
R9747:4930562C15Rik
|
UTSW |
16 |
4,668,711 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9773:4930562C15Rik
|
UTSW |
16 |
4,668,057 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
X0028:4930562C15Rik
|
UTSW |
16 |
4,685,231 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
Z1176:4930562C15Rik
|
UTSW |
16 |
4,684,112 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGACATCCAGTTTGGGAGGG -3'
(R):5'- CCATCTTGTGAGTAGCTAGCAC -3'
Sequencing Primer
(F):5'- CAGTTTGGGAGGGGAGGACTC -3'
(R):5'- ACAGTATGCCTCTGCGACAG -3'
|
| Posted On |
2021-01-18 |
Incidental Mutation