Mutagenetix > Incidental Mutation

Incidental Mutation 'R9080:Dtx3'

689973

Institutional Source

Beutler Lab

Gene Symbol

Dtx3

Ensembl Gene

ENSMUSG00000040415

Gene Name

deltex 3, E3 ubiquitin ligase

Synonyms

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.369) question?

Stock #

R9080 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

127026247-127031597 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 127027137 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 346 (S346T)

Ref Sequence

ENSEMBL: ENSMUSP00000111937 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019611] [ENSMUST00000038217] [ENSMUST00000116229] [ENSMUST00000130855] [ENSMUST00000137151] [ENSMUST00000144322] [ENSMUST00000167353] [ENSMUST00000218587] [ENSMUST00000218654] [ENSMUST00000219245] [ENSMUST00000222006]

AlphaFold

Q80V91

Predicted Effect

probably benign
Transcript: ENSMUST00000019611

SMART Domains

Protein: ENSMUSP00000019611
Gene: ENSMUSG00000019467

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
low complexity region	81	103	N/A	INTRINSIC
low complexity region	146	171	N/A	INTRINSIC
RhoGEF	203	374	2.45e-49	SMART
PH	394	507	6.67e-1	SMART
low complexity region	561	569	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000038217

SMART Domains

Protein: ENSMUSP00000044627
Gene: ENSMUSG00000040415

Domain	Start	End	E-Value	Type
low complexity region	64	72	N/A	INTRINSIC
coiled coil region	73	104	N/A	INTRINSIC
low complexity region	119	154	N/A	INTRINSIC
RING	164	202	1.04e-7	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000116229
AA Change: S346T

PolyPhen 2 Score 0.682 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000111937
Gene: ENSMUSG00000040415
AA Change: S346T

Domain	Start	End	E-Value	Type
low complexity region	64	72	N/A	INTRINSIC
coiled coil region	73	104	N/A	INTRINSIC
low complexity region	119	154	N/A	INTRINSIC
RING	164	202	1.04e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000130855

SMART Domains

Protein: ENSMUSP00000114776
Gene: ENSMUSG00000040415

Domain	Start	End	E-Value	Type
low complexity region	67	75	N/A	INTRINSIC
coiled coil region	76	107	N/A	INTRINSIC
low complexity region	122	157	N/A	INTRINSIC
RING	167	205	1.04e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000137151

Predicted Effect

probably benign
Transcript: ENSMUST00000144322

SMART Domains

Protein: ENSMUSP00000116510
Gene: ENSMUSG00000040415

Domain	Start	End	E-Value	Type
low complexity region	67	75	N/A	INTRINSIC
coiled coil region	76	107	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000167353

SMART Domains

Protein: ENSMUSP00000126339
Gene: ENSMUSG00000019467

Domain	Start	End	E-Value	Type
low complexity region	72	94	N/A	INTRINSIC
low complexity region	137	162	N/A	INTRINSIC
RhoGEF	194	365	2.45e-49	SMART
PH	385	498	6.67e-1	SMART
low complexity region	552	560	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000218587

Predicted Effect

probably benign
Transcript: ENSMUST00000218654

Predicted Effect

probably benign
Transcript: ENSMUST00000218864

Predicted Effect

probably benign
Transcript: ENSMUST00000219245

Predicted Effect

probably benign
Transcript: ENSMUST00000222006

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DTX3 functions as an E3 ubiquitin ligase (Takeyama et al., 2003 [PubMed 12670957]).[supplied by OMIM, Nov 2009]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5730596B20Rik	T	C	6: 52,155,973 (GRCm39)	I13T	unknown	Het
Adad1	G	T	3: 37,119,398 (GRCm39)	V160L	probably benign	Het
Adamts6	T	A	13: 104,449,427 (GRCm39)	M279K	probably damaging	Het
Adgra2	T	C	8: 27,604,529 (GRCm39)	S535P	probably benign	Het
Akr1c13	C	T	13: 4,241,172 (GRCm39)		probably benign	Het
Anapc1	A	G	2: 128,464,426 (GRCm39)	I1690T	possibly damaging	Het
Ccdc138	A	G	10: 58,397,884 (GRCm39)	M575V	probably damaging	Het
Cfap100	T	C	6: 90,383,183 (GRCm39)	N330S	unknown	Het
Col12a1	T	C	9: 79,517,133 (GRCm39)	D2849G	probably benign	Het
Cox11	G	A	11: 90,535,246 (GRCm39)	M232I	probably damaging	Het
Cpne7	C	T	8: 123,856,951 (GRCm39)	P402L	probably damaging	Het
Cspp1	G	A	1: 10,183,919 (GRCm39)	S848N	probably benign	Het
Cxcr5	A	G	9: 44,424,563 (GRCm39)	S365P	probably damaging	Het
Dclre1c	A	T	2: 3,458,589 (GRCm39)	M389L	probably benign	Het
Dlc1	T	C	8: 37,052,006 (GRCm39)	D124G	probably benign	Het
Exosc10	A	G	4: 148,649,121 (GRCm39)	D337G	probably damaging	Het
Fpr1	G	A	17: 18,097,212 (GRCm39)	A259V	probably benign	Het
Gm11232	A	T	4: 71,676,070 (GRCm39)	M25K	probably benign	Het
Gm4950	A	G	18: 51,998,922 (GRCm39)	V11A	possibly damaging	Het
Gsap	C	T	5: 21,399,410 (GRCm39)	T37I	possibly damaging	Het
Igfbp2	T	A	1: 72,891,157 (GRCm39)	C252S	probably damaging	Het
Ing2	T	C	8: 48,121,808 (GRCm39)	T247A	possibly damaging	Het
Ints1	C	T	5: 139,739,300 (GRCm39)	V2028M	probably benign	Het
Itfg1	A	G	8: 86,466,874 (GRCm39)	F400L	possibly damaging	Het
Itga6	A	G	2: 71,673,633 (GRCm39)	Y889C	probably benign	Het
Kcnh3	A	G	15: 99,139,667 (GRCm39)	E882G	probably damaging	Het
Limch1	T	A	5: 67,174,992 (GRCm39)	C515S	probably benign	Het
Lrrc74a	G	T	12: 86,795,908 (GRCm39)	V294F	possibly damaging	Het
Megf8	A	G	7: 25,041,131 (GRCm39)	E1120G	probably damaging	Het
Nbea	A	T	3: 55,912,516 (GRCm39)	Y1090*	probably null	Het
Nckap1	A	G	2: 80,350,726 (GRCm39)	Y794H	probably damaging	Het
Nfib	T	C	4: 82,623,754 (GRCm39)	M25V		Het
Ogfod2	A	G	5: 124,253,007 (GRCm39)	E339G	probably damaging	Het
Olah	T	A	2: 3,349,389 (GRCm39)	E64V	probably damaging	Het
Or2a14	T	A	6: 43,130,830 (GRCm39)	V197D	possibly damaging	Het
Or9a4	T	A	6: 40,548,563 (GRCm39)	L81H	probably damaging	Het
Pdcd6ip	T	A	9: 113,520,624 (GRCm39)	K120M	probably damaging	Het
Pex1	A	G	5: 3,655,476 (GRCm39)	I134V	probably damaging	Het
Plekhm2	T	C	4: 141,359,039 (GRCm39)	H576R	probably damaging	Het
Ptpn13	T	A	5: 103,637,494 (GRCm39)	H127Q	probably damaging	Het
Rmnd5b	C	T	11: 51,515,055 (GRCm39)		probably null	Het
Rsf1	A	AAGGCGACGG	7: 97,229,111 (GRCm39)		probably null	Het
Sec16b	C	A	1: 157,393,300 (GRCm39)	Q995K	probably benign	Het
Serpinb6d	T	A	13: 33,855,107 (GRCm39)	S260R	probably benign	Het
Slc47a1	C	T	11: 61,264,219 (GRCm39)	G67S	possibly damaging	Het
Slco6d1	T	C	1: 98,348,983 (GRCm39)	V18A	probably benign	Het
Tfcp2	GGTAATCCAAAGAGATGGACTGGTGGCTGTCCTGCTGCTGAGTAATCCAAAGAGATGGACTGGTGGCTGTCCTGCTGCTGAGTAATCCAAAGAGATGGACTGGTGGCTGTCCTGCTGCTGAGTAATCCAAAGAGATGGACTGGTGGCTGTCCTGCTGCTGA	GGTAATCCAAAGAGATGGACTGGTGGCTGTCCTGCTGCTGAGTAATCCAAAGAGATGGACTGGTGGCTGTCCTGCTGCTGAGTAATCCAAAGAGATGGACTGGTGGCTGTCCTGCTGCTGA	15: 100,395,968 (GRCm39)		probably null	Het
Tiam2	T	G	17: 3,464,519 (GRCm39)	C83G	probably benign	Het
Tlcd5	C	T	9: 43,022,664 (GRCm39)	R230Q	probably benign	Het
Tln2	C	T	9: 67,253,843 (GRCm39)	G743R	probably damaging	Het
Tnks	CCCGCCGCCGCCGCCGCCGCCG	CCCGCCGCCGCCGCCGCCG	8: 35,432,466 (GRCm39)		probably benign	Het
Ttn	G	A	2: 76,536,843 (GRCm39)	T34994I	probably benign	Het
Ube2q2l	T	A	6: 136,377,720 (GRCm39)	D370V	probably damaging	Het
Uggt2	T	A	14: 119,295,017 (GRCm39)	E536D	probably benign	Het
Usp54	T	C	14: 20,612,308 (GRCm39)	E836G	probably damaging	Het
Vmn1r41	C	T	6: 89,724,138 (GRCm39)	T63M	unknown	Het
Vmn2r72	A	C	7: 85,387,464 (GRCm39)	I700S	probably damaging	Het
Xrcc4	T	C	13: 90,149,097 (GRCm39)	N141S	probably damaging	Het
Zfp638	T	C	6: 83,844,155 (GRCm39)	V6A	unknown	Het

Other mutations in Dtx3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02131:Dtx3	APN	10	127,029,148 (GRCm39)	missense	probably damaging	0.99
IGL02314:Dtx3	APN	10	127,026,828 (GRCm39)	unclassified	probably benign
R0257:Dtx3	UTSW	10	127,028,761 (GRCm39)	missense	probably benign
R1108:Dtx3	UTSW	10	127,027,158 (GRCm39)	missense	possibly damaging	0.84
R1422:Dtx3	UTSW	10	127,027,158 (GRCm39)	missense	possibly damaging	0.84
R3693:Dtx3	UTSW	10	127,027,293 (GRCm39)	missense	probably benign	0.33
R4016:Dtx3	UTSW	10	127,027,040 (GRCm39)	missense	probably benign	0.00
R4231:Dtx3	UTSW	10	127,029,058 (GRCm39)	missense	possibly damaging	0.92
R4232:Dtx3	UTSW	10	127,029,058 (GRCm39)	missense	possibly damaging	0.92
R4236:Dtx3	UTSW	10	127,029,058 (GRCm39)	missense	possibly damaging	0.92
R4590:Dtx3	UTSW	10	127,028,564 (GRCm39)	missense	probably damaging	0.99
R4838:Dtx3	UTSW	10	127,027,176 (GRCm39)	splice site	probably null
R5338:Dtx3	UTSW	10	127,028,919 (GRCm39)	missense	probably benign	0.23
R5510:Dtx3	UTSW	10	127,028,807 (GRCm39)	missense	probably benign	0.08
R6989:Dtx3	UTSW	10	127,028,746 (GRCm39)	missense	probably benign	0.01
R7225:Dtx3	UTSW	10	127,027,358 (GRCm39)	missense	probably damaging	0.99
R8137:Dtx3	UTSW	10	127,029,041 (GRCm39)	missense	possibly damaging	0.85
R8293:Dtx3	UTSW	10	127,026,882 (GRCm39)	missense	probably damaging	1.00
R8411:Dtx3	UTSW	10	127,028,693 (GRCm39)	missense	possibly damaging	0.55
R9663:Dtx3	UTSW	10	127,028,518 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GAGGATCAGAGTTAGTCGTTTGGAC -3'
(R):5'- GAAAGGCATTTGACCAGCGC -3'

Sequencing Primer
(F):5'- GACTTGATCGTCCTTACCCAC -3'
(R):5'- GCATTTGACCAGCGCCTCAC -3'

Posted On

2021-11-19