Mutagenetix > Incidental Mutation

Incidental Mutation 'R9653:Fgd4'

727232

Institutional Source

Beutler Lab

Gene Symbol

Fgd4

Ensembl Gene

ENSMUSG00000022788

Gene Name

FYVE, RhoGEF and PH domain containing 4

Synonyms

ZFYVE6, Frabin-alpha, Frabin-beta, 9330209B17Rik, Frabin, Frabin-gamma

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9653 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

16234774-16418400 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 16254461 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 524 (H524L)

Ref Sequence

ENSEMBL: ENSMUSP00000125174 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069284] [ENSMUST00000161188] [ENSMUST00000161861] [ENSMUST00000162671]

AlphaFold

Q91ZT5

Predicted Effect

probably benign
Transcript: ENSMUST00000069284
AA Change: H524L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000069573
Gene: ENSMUSG00000022788
AA Change: H524L

Domain	Start	End	E-Value	Type
RhoGEF	210	392	1.48e-57	SMART
PH	423	523	1.91e-19	SMART
FYVE	551	620	2.2e-30	SMART
PH	644	742	1.31e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161188
AA Change: H524L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000123763
Gene: ENSMUSG00000022788
AA Change: H524L

Domain	Start	End	E-Value	Type
RhoGEF	210	392	1.48e-57	SMART
PH	423	523	1.91e-19	SMART
FYVE	551	603	1.94e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161861
AA Change: H524L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000125174
Gene: ENSMUSG00000022788
AA Change: H524L

Domain	Start	End	E-Value	Type
RhoGEF	210	392	1.48e-57	SMART
PH	423	523	1.91e-19	SMART
FYVE	551	620	2.2e-30	SMART
PH	644	742	1.31e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162671
AA Change: H524L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000125736
Gene: ENSMUSG00000022788
AA Change: H524L

Domain	Start	End	E-Value	Type
RhoGEF	210	392	1.48e-57	SMART
PH	423	523	1.91e-19	SMART
FYVE	551	620	2.2e-30	SMART
PH	644	742	1.31e-8	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene is a member of the FYVE, RhoGEF and PH domain containing (FGD) family. The encoded protein is a Cdc42-specific guanine nucleotide exchange factor (GEF) that plays an essential role in regulating the actin cytoskeleton and cell morphology. Disruption of the gene in mouse causes abnormal nerve development and dysmyelination. Mutations in a similar gene in human can cause Charcot-Marie-Tooth disease type 4H (CMT4H), a disorder of the peripheral nervous system. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2014]
PHENOTYPE: Mice homozygous for a knock-out allele display dysmyelination in early peripheral nerve development, followed by severe myelin abnormalities, demyelinationn, nervous system electrophysiological deficits, and decreased grip strength at later stages. [provided by MGI curators]

Allele List at MGI

All alleles(60) : Gene trapped(60)

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	C	T	11: 9,243,741 (GRCm39)	P1868L	probably benign	Het
Abcc1	T	C	16: 14,214,257 (GRCm39)	Y191H	probably damaging	Het
Adamtsl5	C	T	10: 80,180,763 (GRCm39)	G100R	probably damaging	Het
Adgrg5	C	T	8: 95,663,864 (GRCm39)	P235S		Het
Anks1b	T	G	10: 90,346,524 (GRCm39)	L608R	probably damaging	Het
Ano10	C	G	9: 122,080,221 (GRCm39)	A597P	possibly damaging	Het
Calb2	T	C	8: 110,881,374 (GRCm39)	M58V	probably benign	Het
Ccdc180	T	C	4: 45,923,495 (GRCm39)	I1092T	probably damaging	Het
Ces3b	G	T	8: 105,812,257 (GRCm39)	A169S	probably damaging	Het
Chmp2a	A	T	7: 12,766,456 (GRCm39)	F129I	probably damaging	Het
Clasp2	T	A	9: 113,670,993 (GRCm39)	W365R	probably benign	Het
Col12a1	T	C	9: 79,584,556 (GRCm39)	K1344R	probably benign	Het
Col3a1	A	G	1: 45,360,728 (GRCm39)	I53V	unknown	Het
Coro2b	T	C	9: 62,335,259 (GRCm39)	Y309C	probably damaging	Het
Cramp1	C	A	17: 25,201,783 (GRCm39)	K566N	probably damaging	Het
Crygs	T	A	16: 22,625,304 (GRCm39)	T46S	probably benign	Het
Ctbp2	C	G	7: 132,615,933 (GRCm39)	R334P	probably damaging	Het
Dcstamp	A	T	15: 39,623,792 (GRCm39)	D469V	probably benign	Het
Dhdh	T	C	7: 45,128,551 (GRCm39)	D209G	probably damaging	Het
Dnah7b	T	C	1: 46,252,544 (GRCm39)	V1742A	possibly damaging	Het
Dnaja2	T	C	8: 86,265,982 (GRCm39)	T368A	probably benign	Het
Dscaml1	T	C	9: 45,643,466 (GRCm39)		probably null	Het
Eps8l1	A	T	7: 4,481,886 (GRCm39)	K704M	unknown	Het
Fam186b	G	A	15: 99,177,616 (GRCm39)	A570V	probably damaging	Het
Fktn	T	A	4: 53,731,273 (GRCm39)	F103I	probably benign	Het
Gcc2	T	C	10: 58,110,822 (GRCm39)	M1001T	possibly damaging	Het
Gm4847	T	C	1: 166,467,582 (GRCm39)	S205G	possibly damaging	Het
Grid2	A	T	6: 63,907,968 (GRCm39)	N203Y	possibly damaging	Het
Hif3a	G	A	7: 16,782,641 (GRCm39)	A308V	probably damaging	Het
Htr5a	A	G	5: 28,047,838 (GRCm39)	N131S	possibly damaging	Het
Igfn1	G	A	1: 135,883,323 (GRCm39)	Q2728*	probably null	Het
Ighv5-16	C	A	12: 113,802,313 (GRCm39)	K62N	possibly damaging	Het
Ip6k3	A	T	17: 27,367,588 (GRCm39)	Y203N	possibly damaging	Het
Itga2	G	A	13: 115,020,991 (GRCm39)	P120L	probably benign	Het
Itpkb	G	T	1: 180,160,056 (GRCm39)	E61*	probably null	Het
Kcnj3	G	A	2: 55,484,864 (GRCm39)	V321M	probably damaging	Het
Kmt2c	A	G	5: 25,507,819 (GRCm39)	L3206P	probably damaging	Het
Krtap5-4	T	C	7: 141,857,908 (GRCm39)	C193R	unknown	Het
Large1	G	T	8: 73,564,106 (GRCm39)	H553Q	probably benign	Het
Lrfn5	T	A	12: 61,890,418 (GRCm39)	V569D	probably damaging	Het
Luzp2	A	G	7: 54,702,580 (GRCm39)	T48A	probably damaging	Het
Lypd6	A	T	2: 50,080,758 (GRCm39)	T149S	probably benign	Het
Map3k1	T	C	13: 111,890,296 (GRCm39)	N1301S	possibly damaging	Het
Ndufv2	C	T	17: 66,396,251 (GRCm39)	W91*	probably null	Het
Nisch	A	T	14: 30,893,628 (GRCm39)	V1315E	probably damaging	Het
Npas1	T	C	7: 16,190,146 (GRCm39)	I467V	probably benign	Het
Nucb1	A	G	7: 45,144,202 (GRCm39)	M337T	probably benign	Het
Oog3	T	G	4: 143,884,489 (GRCm39)	R482S	probably benign	Het
Or10d4b	T	C	9: 39,535,154 (GRCm39)	L243P	probably damaging	Het
Or4f14c	A	T	2: 111,941,261 (GRCm39)	M112K	probably damaging	Het
Or51ag1	C	T	7: 103,155,727 (GRCm39)	R142H	probably benign	Het
Or56a42-ps1	A	T	7: 104,775,985 (GRCm39)	N164K	probably benign	Het
Padi2	T	C	4: 140,662,036 (GRCm39)		probably null	Het
Pam	C	T	1: 97,768,469 (GRCm39)	V660M	possibly damaging	Het
Phc2	C	T	4: 128,641,012 (GRCm39)	L700F	probably damaging	Het
Plekha1	T	C	7: 130,479,494 (GRCm39)	V4A	possibly damaging	Het
Rai1	A	G	11: 60,080,142 (GRCm39)	E1402G	probably benign	Het
Recql5	G	A	11: 115,788,032 (GRCm39)	A429V	probably benign	Het
Rere	A	G	4: 150,516,010 (GRCm39)	N101S	probably benign	Het
Robo1	T	G	16: 72,821,330 (GRCm39)	S1357A	possibly damaging	Het
Rsl1	T	A	13: 67,330,106 (GRCm39)	Y185N	probably damaging	Het
Rsph3a	T	C	17: 8,165,074 (GRCm39)	S145P	possibly damaging	Het
Sall1	T	C	8: 89,757,506 (GRCm39)	E866G	probably damaging	Het
Sall3	A	T	18: 81,016,228 (GRCm39)	S567T	probably benign	Het
Sap30	G	A	8: 57,938,156 (GRCm39)	Q154*	probably null	Het
Sbf2	T	C	7: 110,040,702 (GRCm39)	Q375R	possibly damaging	Het
Scn8a	A	G	15: 100,937,947 (GRCm39)	E1772G	probably damaging	Het
Scube3	C	T	17: 28,375,772 (GRCm39)	A169V	probably damaging	Het
Sema6c	T	C	3: 95,080,525 (GRCm39)	S940P	probably benign	Het
Sertad4	C	T	1: 192,528,836 (GRCm39)	D327N	probably damaging	Het
Shisal2b	A	G	13: 105,000,296 (GRCm39)		probably benign	Het
Skp1	A	G	11: 52,134,514 (GRCm39)	T82A	possibly damaging	Het
Slc39a14	G	T	14: 70,547,248 (GRCm39)	T366K	probably damaging	Het
Snrnp200	G	T	2: 127,067,959 (GRCm39)	V819L	probably damaging	Het
Sntg1	T	A	1: 8,433,749 (GRCm39)	T501S	unknown	Het
Srsf12	T	C	4: 33,231,249 (GRCm39)	S253P	possibly damaging	Het
Sycp2l	A	G	13: 41,295,381 (GRCm39)	S315G	probably benign	Het
Tars2	T	C	3: 95,655,379 (GRCm39)	Y337C	probably damaging	Het
Thbs4	T	C	13: 92,898,022 (GRCm39)	D599G	probably benign	Het
Tmem200c	A	G	17: 69,149,181 (GRCm39)	H588R	probably benign	Het
Tmem255b	T	A	8: 13,506,005 (GRCm39)	V204E	probably damaging	Het
Usp24	T	A	4: 106,204,564 (GRCm39)	M261K	probably benign	Het
Utrn	T	A	10: 12,497,123 (GRCm39)	I2429F	probably benign	Het
Utrn	C	T	10: 12,539,189 (GRCm39)	A1943T	probably benign	Het
Vmn2r85	A	T	10: 130,261,694 (GRCm39)	D214E	probably damaging	Het
Wdr81	G	T	11: 75,340,213 (GRCm39)	P183T		Het
Zfp28	G	A	7: 6,395,623 (GRCm39)	R134H		Het
Zfp532	T	A	18: 65,756,308 (GRCm39)	D80E	possibly damaging	Het
Zfyve26	T	C	12: 79,334,418 (GRCm39)	D200G	probably benign	Het

Other mutations in Fgd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01289:Fgd4	APN	16	16,302,167 (GRCm39)	missense	probably damaging	0.99
IGL01455:Fgd4	APN	16	16,308,354 (GRCm39)	missense	probably benign	0.22
IGL02035:Fgd4	APN	16	16,308,280 (GRCm39)	splice site	probably benign
IGL02353:Fgd4	APN	16	16,279,909 (GRCm39)	missense	probably damaging	0.96
IGL02360:Fgd4	APN	16	16,279,909 (GRCm39)	missense	probably damaging	0.96
IGL03100:Fgd4	APN	16	16,295,383 (GRCm39)	splice site	probably benign
11287:Fgd4	UTSW	16	16,241,787 (GRCm39)	missense	probably damaging	1.00
R0787:Fgd4	UTSW	16	16,241,765 (GRCm39)	splice site	probably benign
R0853:Fgd4	UTSW	16	16,292,251 (GRCm39)	splice site	probably benign
R0879:Fgd4	UTSW	16	16,295,313 (GRCm39)	missense	probably damaging	1.00
R1482:Fgd4	UTSW	16	16,302,337 (GRCm39)	missense	probably benign	0.39
R1619:Fgd4	UTSW	16	16,241,920 (GRCm39)	missense	possibly damaging	0.52
R1635:Fgd4	UTSW	16	16,292,893 (GRCm39)	nonsense	probably null
R2018:Fgd4	UTSW	16	16,253,824 (GRCm39)	missense	probably benign	0.15
R2120:Fgd4	UTSW	16	16,243,692 (GRCm39)	missense	probably benign	0.44
R2292:Fgd4	UTSW	16	16,253,864 (GRCm39)	missense	possibly damaging	0.95
R2902:Fgd4	UTSW	16	16,243,729 (GRCm39)	missense	probably damaging	1.00
R4575:Fgd4	UTSW	16	16,254,896 (GRCm39)	missense	probably damaging	1.00
R4747:Fgd4	UTSW	16	16,241,793 (GRCm39)	missense	probably damaging	1.00
R4941:Fgd4	UTSW	16	16,302,402 (GRCm39)	missense	probably benign
R5196:Fgd4	UTSW	16	16,302,006 (GRCm39)	missense	probably benign	0.01
R5372:Fgd4	UTSW	16	16,302,155 (GRCm39)	missense	probably benign	0.03
R5457:Fgd4	UTSW	16	16,279,873 (GRCm39)	missense	probably benign	0.39
R5486:Fgd4	UTSW	16	16,292,901 (GRCm39)	missense	probably damaging	1.00
R6709:Fgd4	UTSW	16	16,302,345 (GRCm39)	missense	probably benign	0.09
R6962:Fgd4	UTSW	16	16,301,951 (GRCm39)	splice site	probably null
R7207:Fgd4	UTSW	16	16,302,420 (GRCm39)	missense	probably benign	0.11
R7732:Fgd4	UTSW	16	16,302,459 (GRCm39)	missense	probably benign
R7749:Fgd4	UTSW	16	16,293,018 (GRCm39)	missense	probably benign	0.02
R7846:Fgd4	UTSW	16	16,240,590 (GRCm39)	missense	probably damaging	1.00
R7937:Fgd4	UTSW	16	16,287,637 (GRCm39)	missense	probably damaging	1.00
R8517:Fgd4	UTSW	16	16,240,509 (GRCm39)	missense	probably benign	0.04
R8755:Fgd4	UTSW	16	16,302,133 (GRCm39)	missense	probably benign	0.00
R9015:Fgd4	UTSW	16	16,271,941 (GRCm39)	missense	probably damaging	1.00
R9055:Fgd4	UTSW	16	16,240,494 (GRCm39)	missense	possibly damaging	0.54
R9259:Fgd4	UTSW	16	16,295,325 (GRCm39)	missense	probably damaging	1.00
R9364:Fgd4	UTSW	16	16,308,353 (GRCm39)	missense	probably benign	0.08
R9554:Fgd4	UTSW	16	16,308,353 (GRCm39)	missense	probably benign	0.08
R9682:Fgd4	UTSW	16	16,302,202 (GRCm39)	missense	probably benign
Z1088:Fgd4	UTSW	16	16,302,334 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CAACTTATTTTGGGATTGCAAGGG -3'
(R):5'- AATGTATACACTGGAACCTGGAG -3'

Sequencing Primer
(F):5'- CTTATTTTGGGATTGCAAGGGAAAAG -3'
(R):5'- CCAGGACTTACATGGTAGCTC -3'

Posted On

2022-10-06