Incidental Mutation 'R0971:Psd2'
ID |
81520 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Psd2
|
Ensembl Gene |
ENSMUSG00000024347 |
Gene Name |
pleckstrin and Sec7 domain containing 2 |
Synonyms |
EFA6C, 6330404E20Rik |
MMRRC Submission |
039100-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R0971 (G1)
|
Quality Score |
219 |
Status
|
Not validated
|
Chromosome |
18 |
Chromosomal Location |
36097883-36147768 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to A
at 36112839 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Lysine
at position 178
(T178K)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000135431
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000115716]
[ENSMUST00000175734]
[ENSMUST00000176472]
[ENSMUST00000176873]
[ENSMUST00000177432]
|
AlphaFold |
Q6P1I6 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000115716
AA Change: T178K
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000111381 Gene: ENSMUSG00000024347 AA Change: T178K
Domain | Start | End | E-Value | Type |
low complexity region
|
153 |
169 |
N/A |
INTRINSIC |
low complexity region
|
216 |
234 |
N/A |
INTRINSIC |
low complexity region
|
247 |
264 |
N/A |
INTRINSIC |
Sec7
|
270 |
461 |
4.69e-56 |
SMART |
PH
|
510 |
624 |
4.35e-14 |
SMART |
Blast:Sec7
|
653 |
705 |
4e-24 |
BLAST |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000175734
AA Change: T178K
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000135795 Gene: ENSMUSG00000024347 AA Change: T178K
Domain | Start | End | E-Value | Type |
low complexity region
|
153 |
169 |
N/A |
INTRINSIC |
low complexity region
|
216 |
234 |
N/A |
INTRINSIC |
low complexity region
|
247 |
264 |
N/A |
INTRINSIC |
Sec7
|
270 |
462 |
4.1e-55 |
SMART |
PH
|
511 |
625 |
1.9e-16 |
SMART |
Blast:Sec7
|
654 |
706 |
4e-24 |
BLAST |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000176472
AA Change: T178K
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000135285 Gene: ENSMUSG00000024347 AA Change: T178K
Domain | Start | End | E-Value | Type |
low complexity region
|
153 |
169 |
N/A |
INTRINSIC |
low complexity region
|
216 |
234 |
N/A |
INTRINSIC |
low complexity region
|
247 |
264 |
N/A |
INTRINSIC |
Sec7
|
270 |
461 |
4.69e-56 |
SMART |
Pfam:PH_9
|
511 |
553 |
4.5e-12 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000176873
AA Change: T178K
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000135616 Gene: ENSMUSG00000024347 AA Change: T178K
Domain | Start | End | E-Value | Type |
low complexity region
|
153 |
169 |
N/A |
INTRINSIC |
low complexity region
|
216 |
234 |
N/A |
INTRINSIC |
low complexity region
|
247 |
264 |
N/A |
INTRINSIC |
Sec7
|
270 |
462 |
4.2e-55 |
SMART |
PH
|
511 |
625 |
1.9e-16 |
SMART |
Blast:Sec7
|
654 |
706 |
4e-24 |
BLAST |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000177432
AA Change: T178K
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000135431 Gene: ENSMUSG00000024347 AA Change: T178K
Domain | Start | End | E-Value | Type |
low complexity region
|
153 |
169 |
N/A |
INTRINSIC |
low complexity region
|
216 |
234 |
N/A |
INTRINSIC |
low complexity region
|
247 |
264 |
N/A |
INTRINSIC |
Sec7
|
270 |
461 |
4.69e-56 |
SMART |
PH
|
510 |
621 |
5.36e-14 |
SMART |
Blast:Sec7
|
650 |
702 |
4e-24 |
BLAST |
|
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.4%
- 10x: 96.3%
- 20x: 92.5%
|
Validation Efficiency |
|
Allele List at MGI |
All alleles(2) : Targeted, other(2) |
Other mutations in this stock |
Total: 21 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Alpk3 |
G |
A |
7: 80,742,327 (GRCm39) |
E715K |
possibly damaging |
Het |
Cbr2 |
T |
A |
11: 120,621,259 (GRCm39) |
I147F |
probably benign |
Het |
Chdh |
A |
G |
14: 29,755,620 (GRCm39) |
N302S |
probably damaging |
Het |
Cog5 |
T |
A |
12: 31,969,677 (GRCm39) |
H732Q |
probably benign |
Het |
Glyr1 |
GCTGCC |
G |
16: 4,839,209 (GRCm39) |
|
probably null |
Het |
Itln1 |
C |
A |
1: 171,356,772 (GRCm39) |
V236F |
probably damaging |
Het |
Itpr1 |
A |
G |
6: 108,326,590 (GRCm39) |
E104G |
possibly damaging |
Het |
Kcnh8 |
T |
A |
17: 53,032,927 (GRCm39) |
F71L |
probably benign |
Het |
Kif14 |
T |
C |
1: 136,447,392 (GRCm39) |
M1399T |
probably damaging |
Het |
Kif21a |
A |
G |
15: 90,824,784 (GRCm39) |
V1324A |
possibly damaging |
Het |
Klhdc7b |
A |
T |
15: 89,271,257 (GRCm39) |
H713L |
possibly damaging |
Het |
Opn5 |
C |
T |
17: 42,922,218 (GRCm39) |
|
probably null |
Het |
Poteg |
A |
T |
8: 27,937,967 (GRCm39) |
Y41F |
probably damaging |
Het |
Prb1b |
T |
A |
6: 132,290,618 (GRCm39) |
D27V |
unknown |
Het |
Ptch1 |
T |
C |
13: 63,687,657 (GRCm39) |
T374A |
probably benign |
Het |
Rgma |
T |
C |
7: 73,041,246 (GRCm39) |
|
probably null |
Het |
Tmem120a |
A |
G |
5: 135,764,958 (GRCm39) |
L272P |
probably damaging |
Het |
Ugt2b38 |
T |
G |
5: 87,560,232 (GRCm39) |
N361H |
probably damaging |
Het |
Vmn1r40 |
A |
T |
6: 89,691,272 (GRCm39) |
I30F |
probably benign |
Het |
Vps33b |
A |
G |
7: 79,937,647 (GRCm39) |
D465G |
possibly damaging |
Het |
Zan |
G |
A |
5: 137,432,325 (GRCm39) |
A2324V |
unknown |
Het |
|
Other mutations in Psd2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01486:Psd2
|
APN |
18 |
36,113,388 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01578:Psd2
|
APN |
18 |
36,112,838 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02086:Psd2
|
APN |
18 |
36,138,959 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02132:Psd2
|
APN |
18 |
36,137,809 (GRCm39) |
splice site |
probably benign |
|
IGL02480:Psd2
|
APN |
18 |
36,139,136 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02726:Psd2
|
APN |
18 |
36,120,355 (GRCm39) |
critical splice donor site |
probably null |
|
recluse
|
UTSW |
18 |
36,112,764 (GRCm39) |
missense |
probably damaging |
1.00 |
widow
|
UTSW |
18 |
36,113,478 (GRCm39) |
missense |
probably damaging |
0.99 |
3-1:Psd2
|
UTSW |
18 |
36,117,454 (GRCm39) |
missense |
probably damaging |
1.00 |
R0103:Psd2
|
UTSW |
18 |
36,137,770 (GRCm39) |
missense |
probably damaging |
1.00 |
R0103:Psd2
|
UTSW |
18 |
36,137,770 (GRCm39) |
missense |
probably damaging |
1.00 |
R0320:Psd2
|
UTSW |
18 |
36,112,697 (GRCm39) |
missense |
probably damaging |
1.00 |
R0573:Psd2
|
UTSW |
18 |
36,113,546 (GRCm39) |
splice site |
probably benign |
|
R0685:Psd2
|
UTSW |
18 |
36,136,044 (GRCm39) |
missense |
possibly damaging |
0.90 |
R0698:Psd2
|
UTSW |
18 |
36,145,764 (GRCm39) |
missense |
probably benign |
0.22 |
R0730:Psd2
|
UTSW |
18 |
36,111,627 (GRCm39) |
missense |
possibly damaging |
0.85 |
R1085:Psd2
|
UTSW |
18 |
36,145,830 (GRCm39) |
missense |
probably benign |
0.10 |
R1535:Psd2
|
UTSW |
18 |
36,138,843 (GRCm39) |
missense |
probably benign |
0.31 |
R2056:Psd2
|
UTSW |
18 |
36,139,744 (GRCm39) |
missense |
possibly damaging |
0.60 |
R4011:Psd2
|
UTSW |
18 |
36,120,300 (GRCm39) |
missense |
probably benign |
0.01 |
R4246:Psd2
|
UTSW |
18 |
36,139,172 (GRCm39) |
missense |
probably damaging |
1.00 |
R4335:Psd2
|
UTSW |
18 |
36,140,583 (GRCm39) |
missense |
probably damaging |
0.96 |
R4584:Psd2
|
UTSW |
18 |
36,145,881 (GRCm39) |
missense |
probably benign |
|
R4942:Psd2
|
UTSW |
18 |
36,111,717 (GRCm39) |
missense |
probably damaging |
1.00 |
R5120:Psd2
|
UTSW |
18 |
36,112,863 (GRCm39) |
missense |
possibly damaging |
0.92 |
R5373:Psd2
|
UTSW |
18 |
36,140,556 (GRCm39) |
missense |
probably damaging |
1.00 |
R5374:Psd2
|
UTSW |
18 |
36,140,556 (GRCm39) |
missense |
probably damaging |
1.00 |
R5839:Psd2
|
UTSW |
18 |
36,140,577 (GRCm39) |
missense |
probably damaging |
0.97 |
R6200:Psd2
|
UTSW |
18 |
36,139,776 (GRCm39) |
splice site |
probably null |
|
R6925:Psd2
|
UTSW |
18 |
36,112,764 (GRCm39) |
missense |
probably damaging |
1.00 |
R6967:Psd2
|
UTSW |
18 |
36,113,385 (GRCm39) |
missense |
probably damaging |
0.97 |
R7074:Psd2
|
UTSW |
18 |
36,143,737 (GRCm39) |
missense |
probably benign |
0.03 |
R7142:Psd2
|
UTSW |
18 |
36,113,097 (GRCm39) |
missense |
possibly damaging |
0.85 |
R7239:Psd2
|
UTSW |
18 |
36,113,472 (GRCm39) |
missense |
probably damaging |
1.00 |
R7348:Psd2
|
UTSW |
18 |
36,113,389 (GRCm39) |
missense |
possibly damaging |
0.85 |
R7581:Psd2
|
UTSW |
18 |
36,113,050 (GRCm39) |
missense |
probably benign |
0.01 |
R7793:Psd2
|
UTSW |
18 |
36,136,032 (GRCm39) |
missense |
probably benign |
0.37 |
R8221:Psd2
|
UTSW |
18 |
36,113,478 (GRCm39) |
missense |
probably damaging |
0.99 |
R8310:Psd2
|
UTSW |
18 |
36,112,766 (GRCm39) |
missense |
probably damaging |
1.00 |
R8939:Psd2
|
UTSW |
18 |
36,121,292 (GRCm39) |
missense |
probably damaging |
0.98 |
R9463:Psd2
|
UTSW |
18 |
36,143,798 (GRCm39) |
missense |
probably damaging |
0.98 |
X0065:Psd2
|
UTSW |
18 |
36,135,995 (GRCm39) |
missense |
possibly damaging |
0.92 |
Z1177:Psd2
|
UTSW |
18 |
36,111,333 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Predicted Primers |
PCR Primer
(F):5'- TGTACGTGATGGCTTCAGTGCCAC -3'
(R):5'- AGTTCAGCAACTTGTCCGTGTCC -3'
Sequencing Primer
(F):5'- CAGTGCCACTTTTGAGAAGATTCTG -3'
(R):5'- TCATGGAACCCATTGGGCAC -3'
|
Posted On |
2013-11-07 |