Mutagenetix > Incidental Mutation

Incidental Mutation 'R5023:Neo1'

391129

Institutional Source

Beutler Lab

Gene Symbol

Neo1

Ensembl Gene

ENSMUSG00000032340

Gene Name

neogenin

Synonyms

2610028H22Rik, D930014N22Rik, Igdcc2

MMRRC Submission

042614-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5023 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

58781970-58943724 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 58897554 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 134 (D134G)

Ref Sequence

ENSEMBL: ENSMUSP00000150600 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068664] [ENSMUST00000214547]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000068664
AA Change: D134G

PolyPhen 2 Score 0.935 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000063656
Gene: ENSMUSG00000032340
AA Change: D134G

Domain	Start	End	E-Value	Type
signal peptide	1	41	N/A	INTRINSIC
IGc2	76	147	9.49e-5	SMART
IGc2	175	239	4.43e-5	SMART
IGc2	272	338	6.15e-13	SMART
IGc2	364	428	7.76e-10	SMART
low complexity region	446	458	N/A	INTRINSIC
FN3	470	553	8.23e-12	SMART
FN3	570	649	1.78e-16	SMART
FN3	665	749	1.54e-11	SMART
FN3	770	849	5.27e-10	SMART
FN3	885	970	7.63e-7	SMART
FN3	986	1072	2.78e-9	SMART
transmembrane domain	1136	1158	N/A	INTRINSIC
Pfam:Neogenin_C	1189	1492	1.9e-122	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000214547
AA Change: D134G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216941

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000217545

Meta Mutation Damage Score

0.9695

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.2%

Validation Efficiency

98% (127/129)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a cell surface protein that is a member of the immunoglobulin superfamily. The encoded protein consists of four N-terminal immunoglobulin-like domains, six fibronectin type III domains, a transmembrane domain and a C-terminal internal domain that shares homology with the tumor suppressor candidate gene DCC. This protein may be involved in cell growth and differentiation and in cell-cell adhesion. Defects in this gene are associated with cell proliferation in certain cancers. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Feb 2010]
PHENOTYPE: Mice homozygous for a gene trap allele display perinatal lethality and abnormal trigeminal nerve development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 124 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933427D14Rik	A	T	11: 72,057,581 (GRCm39)	H739Q	probably benign	Het
Abca3	C	T	17: 24,593,274 (GRCm39)	R224C	probably damaging	Het
Abca8b	A	G	11: 109,865,814 (GRCm39)		probably null	Het
Adam1b	C	T	5: 121,639,222 (GRCm39)	V608M	probably damaging	Het
Ank2	A	G	3: 126,735,520 (GRCm39)		probably benign	Het
Ankrd17	A	C	5: 90,430,727 (GRCm39)	L1019R	probably damaging	Het
Arih1	T	C	9: 59,393,515 (GRCm39)	N39S	unknown	Het
Best3	G	A	10: 116,824,647 (GRCm39)	V38I	probably benign	Het
Bicc1	A	G	10: 70,783,713 (GRCm39)	S393P	possibly damaging	Het
C1d	T	A	11: 17,216,674 (GRCm39)	N135K	probably benign	Het
Cage1	G	T	13: 38,195,387 (GRCm39)	S778*	probably null	Het
Capn7	T	A	14: 31,074,383 (GRCm39)	V262E	probably damaging	Het
Ccdc190	A	G	1: 169,760,656 (GRCm39)	R95G	probably damaging	Het
Cd163	C	T	6: 124,302,247 (GRCm39)	T937I	probably damaging	Het
Cdh18	G	A	15: 23,259,752 (GRCm39)	S194N	probably damaging	Het
Ceacam23	A	T	7: 17,636,631 (GRCm39)	D236V	probably damaging	Het
Clec4b2	A	T	6: 123,177,915 (GRCm39)	S77C	probably null	Het
Ctsw	T	A	19: 5,516,077 (GRCm39)	D237V	probably damaging	Het
Cyp2c68	G	A	19: 39,700,951 (GRCm39)	T289I	probably benign	Het
Cyp4f39	A	G	17: 32,700,078 (GRCm39)	Y133C	probably damaging	Het
Dlg5	T	C	14: 24,186,690 (GRCm39)	E1847G	probably damaging	Het
Dnah7a	C	A	1: 53,686,407 (GRCm39)	E248*	probably null	Het
Eef2kmt	T	A	16: 5,065,463 (GRCm39)	D248V	probably damaging	Het
Ewsr1	T	C	11: 5,038,054 (GRCm39)	T113A	possibly damaging	Het
Fbxo4	A	G	15: 4,007,238 (GRCm39)		probably null	Het
Fbxo43	A	T	15: 36,163,075 (GRCm39)	M44K	probably benign	Het
Fchsd1	A	G	18: 38,097,863 (GRCm39)	I340T	possibly damaging	Het
Fgf5	C	A	5: 98,409,874 (GRCm39)	A141E	probably damaging	Het
Gfm1	T	C	3: 67,380,877 (GRCm39)	V664A	probably damaging	Het
Glp2r	T	C	11: 67,631,858 (GRCm39)	T121A	possibly damaging	Het
Gm10803	A	C	2: 93,394,517 (GRCm39)	L96F	probably damaging	Het
Gm14569	T	C	X: 35,694,470 (GRCm39)	D1413G	probably benign	Het
Gm15455	T	C	1: 33,876,432 (GRCm39)		noncoding transcript	Het
Gm1818	G	C	12: 48,602,318 (GRCm39)		noncoding transcript	Het
Gnb2	G	A	5: 137,528,202 (GRCm39)		probably null	Het
Gpc4	G	A	X: 51,163,440 (GRCm39)	R148C	probably damaging	Het
Gpx5	C	T	13: 21,472,915 (GRCm39)	V140I	probably damaging	Het
Gtpbp1	A	T	15: 79,603,422 (GRCm39)	Q637L	possibly damaging	Het
H2-T9	A	G	17: 36,420,307 (GRCm39)		probably benign	Het
Herc1	A	T	9: 66,377,608 (GRCm39)	K3458M	possibly damaging	Het
Hhat	A	T	1: 192,409,647 (GRCm39)	L138Q	probably damaging	Het
Hipk1	G	T	3: 103,684,823 (GRCm39)	T264N	probably damaging	Het
Hjurp	A	T	1: 88,202,772 (GRCm39)	Y71N	possibly damaging	Het
Hnf4g	G	T	3: 3,709,647 (GRCm39)	A144S	probably damaging	Het
Hook3	TAGAG	TAG	8: 26,522,047 (GRCm39)		probably null	Het
Ifi204	G	A	1: 173,579,306 (GRCm39)	T513I	possibly damaging	Het
Ino80b	G	T	6: 83,102,023 (GRCm39)	S26R	probably damaging	Het
Ints9	T	A	14: 65,217,677 (GRCm39)	L68H	probably damaging	Het
Isx	C	T	8: 75,619,342 (GRCm39)	T178I	probably benign	Het
Kel	A	G	6: 41,665,045 (GRCm39)	L255P	probably damaging	Het
Klf11	T	A	12: 24,705,358 (GRCm39)	S271T	probably benign	Het
Klhl20	A	C	1: 160,936,790 (GRCm39)		probably null	Het
Lama2	G	A	10: 27,066,500 (GRCm39)	T1127I	probably damaging	Het
Larp1b	T	A	3: 40,988,420 (GRCm39)	N81K	possibly damaging	Het
Lsm11	T	C	11: 45,835,666 (GRCm39)	D25G	probably damaging	Het
Map3k20	T	A	2: 72,232,689 (GRCm39)		probably benign	Het
Mbd6	C	T	10: 127,122,310 (GRCm39)	V173I	probably benign	Het
Milr1	A	G	11: 106,657,791 (GRCm39)	D131G	possibly damaging	Het
Mybpc1	T	G	10: 88,379,636 (GRCm39)	D635A	probably damaging	Het
Myh7b	G	C	2: 155,474,293 (GRCm39)	R1669S	possibly damaging	Het
Ndufa7	A	G	17: 34,043,577 (GRCm39)		probably benign	Het
Ndufs3	C	A	2: 90,729,004 (GRCm39)	A161S	probably benign	Het
Nme4	G	A	17: 26,312,642 (GRCm39)	T129I	probably benign	Het
Npffr2	A	T	5: 89,730,546 (GRCm39)	T159S	probably benign	Het
Nup153	A	T	13: 46,834,585 (GRCm39)		probably benign	Het
Or3a10	T	A	11: 73,935,881 (GRCm39)	D73V	probably damaging	Het
Or51ac3	A	C	7: 103,214,378 (GRCm39)	M36R	possibly damaging	Het
Pate2	T	C	9: 35,597,407 (GRCm39)		probably benign	Het
Pcca	A	G	14: 123,027,810 (GRCm39)	N73D	probably damaging	Het
Pip5k1c	G	A	10: 81,146,723 (GRCm39)		probably null	Het
Pkhd1l1	A	T	15: 44,391,587 (GRCm39)	H1551L	probably benign	Het
Pkhd1l1	G	A	15: 44,445,623 (GRCm39)	M3768I	probably benign	Het
Ppa2	A	G	3: 133,076,195 (GRCm39)	M275V	probably benign	Het
Ptpn23	G	A	9: 110,217,624 (GRCm39)	T744I	probably benign	Het
Ptprv	A	T	1: 135,052,244 (GRCm39)		noncoding transcript	Het
Rad17	A	T	13: 100,781,571 (GRCm39)	H75Q	possibly damaging	Het
Rbm44	T	C	1: 91,096,820 (GRCm39)		probably null	Het
Rbpj	C	T	5: 53,806,757 (GRCm39)	R201W	probably damaging	Het
Rbpjl	C	A	2: 164,252,209 (GRCm39)	L215I	probably damaging	Het
Ror1	A	G	4: 100,283,129 (GRCm39)	E398G	probably benign	Het
Scamp3	T	A	3: 89,089,600 (GRCm39)		probably benign	Het
Selenot	CATGTATG	CATGTATGTATG	3: 58,495,874 (GRCm39)		probably null	Het
Siglec15	A	G	18: 78,091,890 (GRCm39)	C104R	probably damaging	Het
Sis	T	C	3: 72,841,455 (GRCm39)	I787V	probably benign	Het
Slc17a8	T	C	10: 89,412,422 (GRCm39)	D521G	probably benign	Het
Slc7a10	T	A	7: 34,896,780 (GRCm39)	M172K	possibly damaging	Het
Slco4c1	G	A	1: 96,768,953 (GRCm39)	P303L	probably damaging	Het
Slitrk3	T	C	3: 72,957,981 (GRCm39)	T264A	probably benign	Het
Smg8	A	C	11: 86,976,963 (GRCm39)	V206G	probably damaging	Het
Smg9	A	G	7: 24,105,297 (GRCm39)	K137R	possibly damaging	Het
Srrm2	C	A	17: 24,038,291 (GRCm39)		probably benign	Het
Sult2a2	T	A	7: 13,468,785 (GRCm39)	Y84N	possibly damaging	Het
Syngr2	A	T	11: 117,703,336 (GRCm39)	I34F	probably benign	Het
Tank	G	A	2: 61,408,979 (GRCm39)		probably benign	Het
Tead4	T	C	6: 128,271,134 (GRCm39)		probably benign	Het
Tesl1	G	A	X: 23,773,480 (GRCm39)	G327E	probably damaging	Het
Tex36	A	T	7: 133,197,019 (GRCm39)	C33S	probably benign	Het
Timd5	T	A	11: 46,419,359 (GRCm39)	D58E	probably damaging	Het
Timm21	C	A	18: 84,967,539 (GRCm39)	V112L	possibly damaging	Het
Tmem240	T	A	4: 155,824,131 (GRCm39)	L92Q	probably damaging	Het
Tmem268	C	G	4: 63,486,777 (GRCm39)	S100C	probably damaging	Het
Tmod3	G	A	9: 75,418,488 (GRCm39)	P183S	probably damaging	Het
Trappc10	G	T	10: 78,052,994 (GRCm39)	F260L	possibly damaging	Het
Trim16	A	T	11: 62,727,638 (GRCm39)	Y233F	probably benign	Het
Trmt112	T	C	19: 6,888,121 (GRCm39)	V91A	probably benign	Het
Ttc3	A	G	16: 94,230,218 (GRCm39)	E450G	probably benign	Het
Ttk	A	G	9: 83,745,594 (GRCm39)	D647G	probably damaging	Het
Ubash3b	A	G	9: 40,948,755 (GRCm39)	C187R	possibly damaging	Het
Vmn1r29	T	A	6: 58,285,052 (GRCm39)	Y257*	probably null	Het
Vmn1r33	T	C	6: 66,589,089 (GRCm39)	N155S	probably benign	Het
Vmn2r28	T	A	7: 5,489,463 (GRCm39)	I459L	probably benign	Het
Vps16	A	G	2: 130,281,372 (GRCm39)	S235G	probably benign	Het
Vwde	T	C	6: 13,192,641 (GRCm39)	I421V	possibly damaging	Het
Xiap	T	C	X: 41,183,342 (GRCm39)	F23L	probably benign	Het
Xkr7	A	G	2: 152,896,300 (GRCm39)	T385A	probably benign	Het
Zbtb11	A	G	16: 55,826,428 (GRCm39)	Y819C	probably damaging	Het
Zfp112	A	G	7: 23,825,909 (GRCm39)	T624A	probably damaging	Het
Zfp592	A	G	7: 80,674,095 (GRCm39)	D353G	probably damaging	Het
Zfp62	T	A	11: 49,106,556 (GRCm39)	S216T	probably damaging	Het
Zfp677	A	T	17: 21,618,056 (GRCm39)	H371L	probably damaging	Het
Zfp780b	T	C	7: 27,662,873 (GRCm39)	K561E	possibly damaging	Het
Zfp936	G	A	7: 42,836,681 (GRCm39)	D31N	probably damaging	Het
Znfx1	T	C	2: 166,881,746 (GRCm39)	Y217C	probably damaging	Het
Zpbp	C	T	11: 11,365,248 (GRCm39)	E200K	probably benign	Het

Other mutations in Neo1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00514:Neo1	APN	9	58,829,202 (GRCm39)	splice site	probably benign
IGL00885:Neo1	APN	9	58,795,746 (GRCm39)	missense	probably damaging	1.00
IGL01103:Neo1	APN	9	58,788,082 (GRCm39)	missense	possibly damaging	0.60
IGL01322:Neo1	APN	9	58,814,368 (GRCm39)	missense	possibly damaging	0.68
IGL02216:Neo1	APN	9	58,824,336 (GRCm39)	missense	probably damaging	0.96
IGL02327:Neo1	APN	9	58,810,371 (GRCm39)	missense	probably benign	0.08
IGL02392:Neo1	APN	9	58,833,094 (GRCm39)	missense	possibly damaging	0.49
IGL02458:Neo1	APN	9	58,801,150 (GRCm39)	splice site	probably benign
IGL03057:Neo1	APN	9	58,785,342 (GRCm39)	missense	probably damaging	1.00
IGL03091:Neo1	APN	9	58,885,951 (GRCm39)	missense	probably damaging	0.98
IGL03193:Neo1	APN	9	58,815,767 (GRCm39)	missense	probably damaging	1.00
R0097:Neo1	UTSW	9	58,882,021 (GRCm38)	intron	probably benign
R0419:Neo1	UTSW	9	58,897,463 (GRCm39)	splice site	probably benign
R0571:Neo1	UTSW	9	58,893,069 (GRCm39)	missense	probably benign
R0646:Neo1	UTSW	9	58,838,317 (GRCm39)	missense	probably damaging	1.00
R0736:Neo1	UTSW	9	58,824,364 (GRCm39)	missense	possibly damaging	0.78
R0739:Neo1	UTSW	9	58,829,160 (GRCm39)	missense	probably benign	0.22
R1636:Neo1	UTSW	9	58,820,560 (GRCm39)	missense	probably damaging	1.00
R1694:Neo1	UTSW	9	58,787,886 (GRCm39)	missense	probably damaging	1.00
R1827:Neo1	UTSW	9	58,824,314 (GRCm39)	nonsense	probably null
R1927:Neo1	UTSW	9	58,897,668 (GRCm39)	missense	probably benign	0.12
R2354:Neo1	UTSW	9	58,892,917 (GRCm39)	missense	probably benign
R2365:Neo1	UTSW	9	58,863,286 (GRCm39)	missense	probably benign
R3156:Neo1	UTSW	9	58,796,262 (GRCm39)	splice site	probably null
R3552:Neo1	UTSW	9	58,801,161 (GRCm39)	missense	probably damaging	1.00
R3829:Neo1	UTSW	9	58,820,452 (GRCm39)	missense	possibly damaging	0.58
R4477:Neo1	UTSW	9	58,784,582 (GRCm39)	missense	probably damaging	0.99
R4613:Neo1	UTSW	9	58,796,324 (GRCm39)	missense	possibly damaging	0.94
R5046:Neo1	UTSW	9	58,801,194 (GRCm39)	missense	possibly damaging	0.77
R5057:Neo1	UTSW	9	58,897,554 (GRCm39)	missense	probably damaging	1.00
R5323:Neo1	UTSW	9	58,813,931 (GRCm39)	critical splice donor site	probably null
R5394:Neo1	UTSW	9	58,897,517 (GRCm39)	missense	probably benign	0.10
R5470:Neo1	UTSW	9	58,838,350 (GRCm39)	missense	probably damaging	1.00
R5473:Neo1	UTSW	9	58,788,126 (GRCm39)	missense	possibly damaging	0.88
R5500:Neo1	UTSW	9	58,824,337 (GRCm39)	missense	possibly damaging	0.94
R5503:Neo1	UTSW	9	58,892,933 (GRCm39)	missense	possibly damaging	0.67
R6122:Neo1	UTSW	9	58,824,291 (GRCm39)	missense	probably benign
R6191:Neo1	UTSW	9	58,796,312 (GRCm39)	missense	probably damaging	1.00
R6431:Neo1	UTSW	9	58,814,354 (GRCm39)	missense	probably benign	0.27
R6560:Neo1	UTSW	9	58,787,884 (GRCm39)	missense	possibly damaging	0.95
R6658:Neo1	UTSW	9	58,829,132 (GRCm39)	missense	probably benign	0.14
R6772:Neo1	UTSW	9	58,810,259 (GRCm39)	missense	probably damaging	1.00
R6912:Neo1	UTSW	9	58,824,335 (GRCm39)	missense	probably benign	0.00
R7061:Neo1	UTSW	9	58,897,724 (GRCm39)	missense	possibly damaging	0.95
R7145:Neo1	UTSW	9	58,796,462 (GRCm39)	missense	probably damaging	1.00
R7156:Neo1	UTSW	9	58,810,206 (GRCm39)	missense	probably damaging	1.00
R7485:Neo1	UTSW	9	58,791,826 (GRCm39)	missense	probably benign	0.04
R7519:Neo1	UTSW	9	58,785,348 (GRCm39)	missense	probably benign	0.13
R7615:Neo1	UTSW	9	58,791,786 (GRCm39)	missense	probably benign	0.07
R7665:Neo1	UTSW	9	58,833,078 (GRCm39)	missense	probably damaging	1.00
R7695:Neo1	UTSW	9	58,810,212 (GRCm39)	missense	possibly damaging	0.81
R7753:Neo1	UTSW	9	58,863,288 (GRCm39)	missense	probably benign	0.00
R7807:Neo1	UTSW	9	58,897,777 (GRCm39)	missense	probably benign	0.01
R7915:Neo1	UTSW	9	58,838,264 (GRCm39)	missense	probably benign	0.42
R7973:Neo1	UTSW	9	58,897,476 (GRCm39)	missense	probably damaging	1.00
R8356:Neo1	UTSW	9	58,785,402 (GRCm39)	missense	probably damaging	1.00
R8505:Neo1	UTSW	9	58,820,566 (GRCm39)	missense	probably benign	0.02
R8700:Neo1	UTSW	9	58,825,913 (GRCm39)	missense	probably benign	0.28
R8798:Neo1	UTSW	9	58,820,449 (GRCm39)	missense	probably damaging	1.00
R8952:Neo1	UTSW	9	58,897,545 (GRCm39)	missense	probably benign	0.01
R9779:Neo1	UTSW	9	58,886,009 (GRCm39)	nonsense	probably null
R9784:Neo1	UTSW	9	58,889,503 (GRCm39)	missense	probably benign
R9789:Neo1	UTSW	9	58,801,307 (GRCm39)	critical splice acceptor site	probably null
X0063:Neo1	UTSW	9	58,897,581 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- CTGGCATCCTAAACGACTTATTACC -3'
(R):5'- CAGTGTTCGAACATTCACTCCG -3'

Sequencing Primer
(F):5'- ACCATTTAAGTGAAAAGTGTAGCAC -3'
(R):5'- GCCAGTAGACACCCTCTCAGTTAG -3'

Posted On

2016-06-06