Mutagenetix > Incidental Mutation

Incidental Mutation 'R5906:Nap1l1'

460644

Institutional Source

Beutler Lab

Gene Symbol

Nap1l1

Ensembl Gene

ENSMUSG00000058799

Gene Name

nucleosome assembly protein 1-like 1

Synonyms

D10Ertd68e

MMRRC Submission

044103-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.333) question?

Stock #

R5906 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

111309084-111334011 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 111326891 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 151 (K151*)

Ref Sequence

ENSEMBL: ENSMUSP00000151700 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065917] [ENSMUST00000171797] [ENSMUST00000217908] [ENSMUST00000218828] [ENSMUST00000219143] [ENSMUST00000219961]

AlphaFold

P28656

Predicted Effect

probably null
Transcript: ENSMUST00000065917
AA Change: K151*

SMART Domains

Protein: ENSMUSP00000070068
Gene: ENSMUSG00000058799
AA Change: K151*

Domain	Start	End	E-Value	Type
coiled coil region	6	31	N/A	INTRINSIC
Pfam:NAP	75	346	1.5e-96	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000171797
AA Change: K178*

SMART Domains

Protein: ENSMUSP00000126850
Gene: ENSMUSG00000058799
AA Change: K178*

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
coiled coil region	33	58	N/A	INTRINSIC
Pfam:NAP	103	372	9.6e-110	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000217908
AA Change: K151*

Predicted Effect

probably null
Transcript: ENSMUST00000218828
AA Change: K151*

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000218982

Predicted Effect

probably null
Transcript: ENSMUST00000219143
AA Change: K151*

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219718

Predicted Effect

probably null
Transcript: ENSMUST00000219961
AA Change: K151*

Coding Region Coverage

1x: 99.9%
3x: 99.4%
10x: 97.4%
20x: 92.4%

Validation Efficiency

95% (81/85)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the nucleosome assembly protein (NAP) family. This protein participates in DNA replication and may play a role in modulating chromatin formation and contribute to the regulation of cell proliferation. Alternative splicing results in multiple transcript variants encoding different isoforms; however, not all have been fully described. [provided by RefSeq, Apr 2015]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930438A08Rik	C	A	11: 58,182,260 (GRCm39)		probably null	Het
9130023H24Rik	G	A	7: 127,835,664 (GRCm39)	P310S	probably benign	Het
Abcc10	G	T	17: 46,627,485 (GRCm39)	H652Q	probably benign	Het
Actl6b	A	G	5: 137,565,591 (GRCm39)	I396V	possibly damaging	Het
Acvr1b	T	C	15: 101,091,772 (GRCm39)		probably benign	Het
Adamts18	A	T	8: 114,436,251 (GRCm39)	H989Q	probably benign	Het
Adamtsl4	T	C	3: 95,588,094 (GRCm39)	Y631C	probably damaging	Het
Angptl3	A	G	4: 98,925,804 (GRCm39)	T377A	probably benign	Het
Ankmy2	G	A	12: 36,226,632 (GRCm39)	V109M	probably damaging	Het
Anpep	G	A	7: 79,483,423 (GRCm39)	A689V	probably benign	Het
Brwd1	A	T	16: 95,859,938 (GRCm39)	M350K	probably damaging	Het
Cacna1d	C	T	14: 29,818,917 (GRCm39)	V1213I	probably damaging	Het
Capn1	A	G	19: 6,061,451 (GRCm39)	F156L	possibly damaging	Het
Catsperb	C	A	12: 101,476,721 (GRCm39)	F408L	probably damaging	Het
Ccdc146	A	T	5: 21,506,350 (GRCm39)	L697Q	possibly damaging	Het
Cdc37l1	T	A	19: 28,989,386 (GRCm39)	V281E	probably benign	Het
Chia1	A	T	3: 106,039,304 (GRCm39)	T465S	probably benign	Het
Cidec	A	T	6: 113,405,282 (GRCm39)		probably null	Het
Clcnkb	T	C	4: 141,139,610 (GRCm39)	T131A	probably benign	Het
Clec5a	T	A	6: 40,558,793 (GRCm39)	M98L	probably benign	Het
Cnga1	A	T	5: 72,768,201 (GRCm39)	F162I	probably benign	Het
Cyp27b1	A	T	10: 126,884,267 (GRCm39)	I40F	probably damaging	Het
Edrf1	A	G	7: 133,265,144 (GRCm39)	S1027G	probably benign	Het
Entpd1	C	A	19: 40,727,283 (GRCm39)	A448E	probably damaging	Het
Espl1	T	C	15: 102,205,286 (GRCm39)		probably null	Het
Etfdh	T	C	3: 79,511,422 (GRCm39)	I520V	probably damaging	Het
Fchsd1	C	T	18: 38,092,926 (GRCm39)		probably benign	Het
Gabra4	G	A	5: 71,781,253 (GRCm39)	P386L	probably benign	Het
Gckr	G	T	5: 31,463,922 (GRCm39)	V281L	probably damaging	Het
Gfy	T	C	7: 44,827,167 (GRCm39)	T310A	probably benign	Het
Gjc2	C	A	11: 59,067,667 (GRCm39)	V272L	probably benign	Het
Gm13441	G	C	2: 31,777,511 (GRCm39)		silent	Het
H2-DMb2	T	A	17: 34,367,582 (GRCm39)	M1K	probably null	Het
Hipk3	T	C	2: 104,302,153 (GRCm39)	Y13C	probably damaging	Het
Kcnt1	A	T	2: 25,784,536 (GRCm39)		probably benign	Het
Kcnt1	T	C	2: 25,788,413 (GRCm39)	F336S	probably damaging	Het
Klhdc7b	A	G	15: 89,271,359 (GRCm39)	D747G	probably benign	Het
Krt78	T	A	15: 101,857,030 (GRCm39)	E359V	probably damaging	Het
Mast4	T	C	13: 102,872,252 (GRCm39)	D2195G	probably benign	Het
Matk	C	T	10: 81,096,753 (GRCm39)	L188F	probably damaging	Het
Mcoln2	T	C	3: 145,889,496 (GRCm39)	I399T	probably damaging	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Ncbp3	T	A	11: 72,964,327 (GRCm39)	S426T	probably benign	Het
Nisch	T	A	14: 30,893,985 (GRCm39)		probably null	Het
Or4k15b	T	C	14: 50,272,306 (GRCm39)	T185A	probably benign	Het
Or5b113	T	C	19: 13,342,369 (GRCm39)	C126R	probably damaging	Het
Or8a1b	A	G	9: 37,623,101 (GRCm39)	I158T	probably benign	Het
Or8b8	A	G	9: 37,809,174 (GRCm39)	H158R	probably damaging	Het
Peg3	T	C	7: 6,720,854 (GRCm39)	D17G	probably damaging	Het
Pkd1	G	A	17: 24,791,894 (GRCm39)	V1194M	probably benign	Het
Pkd1l2	A	T	8: 117,756,387 (GRCm39)	I1615N	probably damaging	Het
Pkd2	A	T	5: 104,625,045 (GRCm39)		probably null	Het
Pkp4	T	A	2: 59,135,420 (GRCm39)	N97K	possibly damaging	Het
Prrx2	C	T	2: 30,769,522 (GRCm39)	R78C	probably damaging	Het
Pycr1	T	A	11: 120,532,988 (GRCm39)	I91F	probably damaging	Het
Rap1a	T	C	3: 105,645,081 (GRCm39)	N87S	possibly damaging	Het
Sbk2	T	G	7: 4,960,627 (GRCm39)	Y181S	probably damaging	Het
Scart1	T	A	7: 139,808,712 (GRCm39)	D874E	probably damaging	Het
Sec16a	A	T	2: 26,328,843 (GRCm39)	H1057Q	possibly damaging	Het
Sfswap	G	A	5: 129,619,107 (GRCm39)	E486K	probably benign	Het
Shank3	T	C	15: 89,433,119 (GRCm39)	V1213A	probably damaging	Het
Slfn5	T	A	11: 82,848,102 (GRCm39)	I329K	probably benign	Het
Slit1	T	A	19: 41,594,813 (GRCm39)	N1186Y	probably damaging	Het
Ssbp3	A	G	4: 106,867,018 (GRCm39)		probably benign	Het
Steap3	T	A	1: 120,171,731 (GRCm39)	I125F	probably damaging	Het
Synpr	C	A	14: 13,608,788 (GRCm38)		probably benign	Het
Tom1	T	C	8: 75,776,886 (GRCm39)	L69P	probably damaging	Het
Traf3ip3	T	A	1: 192,880,314 (GRCm39)	D5V	possibly damaging	Het
Vmn1r29	G	A	6: 58,284,736 (GRCm39)	S152N	probably benign	Het
Vmn1r68	T	C	7: 10,261,550 (GRCm39)	I183V	probably benign	Het
Wdr17	C	G	8: 55,092,503 (GRCm39)	V1094L	probably benign	Het
Wdr95	A	G	5: 149,487,692 (GRCm39)	I109V	possibly damaging	Het
Zfp39	T	C	11: 58,793,717 (GRCm39)	D7G	probably benign	Het
Zfp512	A	T	5: 31,637,408 (GRCm39)	Q443L	probably damaging	Het
Zfp974	T	A	7: 27,610,230 (GRCm39)	K498N	possibly damaging	Het

Other mutations in Nap1l1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01154:Nap1l1	APN	10	111,322,536 (GRCm39)	missense	probably damaging	0.98
IGL01453:Nap1l1	APN	10	111,328,839 (GRCm39)	missense	probably benign	0.09
IGL01734:Nap1l1	APN	10	111,328,760 (GRCm39)	missense	probably benign	0.26
IGL01843:Nap1l1	APN	10	111,328,772 (GRCm39)	missense	possibly damaging	0.93
PIT1430001:Nap1l1	UTSW	10	111,322,597 (GRCm39)	missense	probably damaging	1.00
PIT4131001:Nap1l1	UTSW	10	111,322,583 (GRCm39)	missense	probably null
R0020:Nap1l1	UTSW	10	111,326,884 (GRCm39)	missense	probably benign	0.01
R0020:Nap1l1	UTSW	10	111,326,884 (GRCm39)	missense	probably benign	0.01
R0131:Nap1l1	UTSW	10	111,321,370 (GRCm39)	missense	probably benign	0.17
R0131:Nap1l1	UTSW	10	111,321,370 (GRCm39)	missense	probably benign	0.17
R0132:Nap1l1	UTSW	10	111,321,370 (GRCm39)	missense	probably benign	0.17
R0601:Nap1l1	UTSW	10	111,326,224 (GRCm39)	splice site	probably benign
R1576:Nap1l1	UTSW	10	111,330,681 (GRCm39)	missense	probably damaging	1.00
R1619:Nap1l1	UTSW	10	111,329,240 (GRCm39)	missense	possibly damaging	0.77
R1969:Nap1l1	UTSW	10	111,326,914 (GRCm39)	missense	probably benign	0.03
R2071:Nap1l1	UTSW	10	111,328,761 (GRCm39)	missense	possibly damaging	0.46
R2383:Nap1l1	UTSW	10	111,329,272 (GRCm39)	missense	probably damaging	1.00
R3836:Nap1l1	UTSW	10	111,331,183 (GRCm39)	splice site	probably null
R3837:Nap1l1	UTSW	10	111,331,183 (GRCm39)	splice site	probably null
R3838:Nap1l1	UTSW	10	111,331,183 (GRCm39)	splice site	probably null
R3839:Nap1l1	UTSW	10	111,331,183 (GRCm39)	splice site	probably null
R4084:Nap1l1	UTSW	10	111,325,938 (GRCm39)	missense	possibly damaging	0.92
R4609:Nap1l1	UTSW	10	111,328,741 (GRCm39)	nonsense	probably null
R4985:Nap1l1	UTSW	10	111,325,944 (GRCm39)	missense	probably benign	0.01
R5982:Nap1l1	UTSW	10	111,331,229 (GRCm39)	missense	possibly damaging	0.71
R6522:Nap1l1	UTSW	10	111,330,084 (GRCm39)	missense	probably damaging	0.99
R6868:Nap1l1	UTSW	10	111,330,669 (GRCm39)	missense	probably damaging	1.00
R7134:Nap1l1	UTSW	10	111,330,655 (GRCm39)	critical splice acceptor site	probably null
R7202:Nap1l1	UTSW	10	111,326,964 (GRCm39)	missense	probably damaging	1.00
R7789:Nap1l1	UTSW	10	111,326,317 (GRCm39)	missense	probably benign	0.01
R7950:Nap1l1	UTSW	10	111,328,769 (GRCm39)	missense	probably damaging	1.00
R8404:Nap1l1	UTSW	10	111,317,162 (GRCm39)	start codon destroyed	probably null	0.53
R8502:Nap1l1	UTSW	10	111,317,162 (GRCm39)	start codon destroyed	probably null	0.53
R8933:Nap1l1	UTSW	10	111,328,710 (GRCm39)	missense	probably benign	0.04
R9680:Nap1l1	UTSW	10	111,330,657 (GRCm39)	missense	probably damaging	0.99
R9772:Nap1l1	UTSW	10	111,325,911 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ACTCTTCAAGTTCTTGATGTGCG -3'
(R):5'- AACCCTACCTTGATACTAAGTACAG -3'

Sequencing Primer
(F):5'- CTTCAAGTTCTTGATGTGCGTGGTG -3'
(R):5'- CCTGGTCTACAAAGTGAGTTCCAG -3'

Posted On

2017-02-28