Mutagenetix > Incidental Mutation

Incidental Mutation 'R2496:Smyd4'

251207

Institutional Source

Beutler Lab

Gene Symbol

Smyd4

Ensembl Gene

ENSMUSG00000018809

Gene Name

SET and MYND domain containing 4

Synonyms

G430029E23Rik

MMRRC Submission

040410-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2496 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

75239259-75296531 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 75281927 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 467 (S467P)

Ref Sequence

ENSEMBL: ENSMUSP00000047505 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044530]

AlphaFold

Q8BTK5

Predicted Effect

probably benign
Transcript: ENSMUST00000044530
AA Change: S467P

PolyPhen 2 Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000047505
Gene: ENSMUSG00000018809
AA Change: S467P

Domain	Start	End	E-Value	Type
Pfam:TPR_11	65	132	2.4e-10	PFAM
SET	231	576	4.85e-1	SMART
Blast:TPR	694	726	1e-6	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145888

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit testicular degeneration and atrophy. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acan	T	C	7: 78,761,065 (GRCm39)	W1926R	probably damaging	Het
Arhgef25	T	C	10: 127,023,063 (GRCm39)	T106A	probably benign	Het
Baz1b	G	A	5: 135,239,629 (GRCm39)	R243Q	probably damaging	Het
Cdhr3	A	G	12: 33,099,068 (GRCm39)	Y508H	probably benign	Het
Cyp2d9	T	A	15: 82,336,680 (GRCm39)	W10R	probably damaging	Het
Dmxl1	A	G	18: 50,013,858 (GRCm39)	T1549A	possibly damaging	Het
Dnah8	A	T	17: 31,070,705 (GRCm39)	R4464W	probably damaging	Het
Dpp4	G	A	2: 62,217,477 (GRCm39)	T40M	possibly damaging	Het
Dync1h1	A	G	12: 110,607,654 (GRCm39)	H2723R	possibly damaging	Het
E2f3	C	T	13: 30,095,289 (GRCm39)	S333N	probably damaging	Het
Fam120a	G	T	13: 49,121,069 (GRCm39)	A79E	probably damaging	Het
Fat3	A	G	9: 15,877,399 (GRCm39)	S3405P	probably benign	Het
Gaa	T	C	11: 119,174,531 (GRCm39)	S793P	possibly damaging	Het
Galc	A	C	12: 98,193,540 (GRCm39)	F350V	probably damaging	Het
Garre1	A	G	7: 33,955,916 (GRCm39)	V391A	possibly damaging	Het
Gm136	A	G	4: 34,746,541 (GRCm39)	C157R	probably damaging	Het
Gm3327	A	C	14: 44,363,720 (GRCm39)	N108T	unknown	Het
H2-M10.2	A	G	17: 36,596,771 (GRCm39)	Y102H	possibly damaging	Het
Hmcn1	A	T	1: 150,490,972 (GRCm39)	D4192E	probably benign	Het
Hpse2	A	C	19: 43,001,482 (GRCm39)		probably null	Het
Idh3a	T	C	9: 54,510,633 (GRCm39)	V362A	probably benign	Het
Kdm7a	A	T	6: 39,147,697 (GRCm39)		probably null	Het
Krt6b	A	G	15: 101,588,216 (GRCm39)	V148A	probably damaging	Het
Lrba	G	A	3: 86,439,394 (GRCm39)	R1977H	probably damaging	Het
Magi2	A	T	5: 19,883,750 (GRCm39)	Y134F	probably benign	Het
Mamdc4	T	C	2: 25,455,914 (GRCm39)	Y801C	probably damaging	Het
Maml1	T	C	11: 50,149,371 (GRCm39)	T790A	probably benign	Het
Map3k19	A	G	1: 127,750,823 (GRCm39)	Y843H	probably damaging	Het
Mdfic	A	T	6: 15,741,041 (GRCm39)	H45L	possibly damaging	Het
Mlx	C	T	11: 100,979,080 (GRCm39)	T87I	probably benign	Het
Mms22l	T	A	4: 24,521,269 (GRCm39)	I382K	probably benign	Het
Mtf1	A	G	4: 124,732,697 (GRCm39)	N585S	probably benign	Het
Mylk2	C	T	2: 152,755,588 (GRCm39)	P251S	probably damaging	Het
Myorg	A	G	4: 41,499,165 (GRCm39)	V155A	probably benign	Het
Nox4	A	T	7: 86,955,958 (GRCm39)	T157S	probably benign	Het
Oas2	A	T	5: 120,886,682 (GRCm39)	H161Q	probably benign	Het
Obscn	A	T	11: 58,994,268 (GRCm39)	V1563E	probably damaging	Het
Or2n1b	T	C	17: 38,460,322 (GRCm39)	V281A	possibly damaging	Het
Or55b3	T	C	7: 102,126,354 (GRCm39)	K241R	probably damaging	Het
Or6c203	A	C	10: 129,009,966 (GRCm39)	F308C	probably benign	Het
Pcdhb11	T	A	18: 37,555,375 (GRCm39)	I235N	probably benign	Het
Pcsk5	A	T	19: 17,443,522 (GRCm39)	C1212*	probably null	Het
Ptges	C	T	2: 30,782,722 (GRCm39)	G110D	possibly damaging	Het
Rsph4a	A	T	10: 33,784,094 (GRCm39)	I239L	possibly damaging	Het
Setx	A	G	2: 29,034,813 (GRCm39)	I433V	probably benign	Het
Snai2	A	T	16: 14,523,866 (GRCm39)	H10L	possibly damaging	Het
Snw1	T	C	12: 87,497,589 (GRCm39)	I467V	probably benign	Het
Stab1	A	T	14: 30,883,420 (GRCm39)	C301S	probably damaging	Het
Tax1bp1	T	A	6: 52,735,342 (GRCm39)		probably null	Het
Tmem70	C	A	1: 16,735,575 (GRCm39)	P15Q	probably benign	Het
Tmem87a	T	C	2: 120,224,859 (GRCm39)	E134G	probably damaging	Het
Ubr4	C	T	4: 139,200,516 (GRCm39)		probably benign	Het
Ugt2b37	C	T	5: 87,402,569 (GRCm39)	V21M	probably damaging	Het
Ugt2b38	T	A	5: 87,569,551 (GRCm39)	I259F	probably damaging	Het
Zfp804a	T	A	2: 82,066,188 (GRCm39)	L53Q	probably damaging	Het

Other mutations in Smyd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00777:Smyd4	APN	11	75,281,634 (GRCm39)	missense	probably benign
IGL02372:Smyd4	APN	11	75,281,111 (GRCm39)	nonsense	probably null
IGL02390:Smyd4	APN	11	75,278,332 (GRCm39)	splice site	probably null
IGL02492:Smyd4	APN	11	75,294,252 (GRCm39)	missense	probably benign
IGL02504:Smyd4	APN	11	75,281,507 (GRCm39)	missense	probably damaging	1.00
IGL02623:Smyd4	APN	11	75,280,890 (GRCm39)	splice site	probably benign
IGL02661:Smyd4	APN	11	75,281,767 (GRCm39)	nonsense	probably null
IGL03084:Smyd4	APN	11	75,281,433 (GRCm39)	missense	probably benign	0.00
PIT4431001:Smyd4	UTSW	11	75,294,339 (GRCm39)	missense	probably damaging	1.00
R0507:Smyd4	UTSW	11	75,290,534 (GRCm39)	missense	possibly damaging	0.69
R0834:Smyd4	UTSW	11	75,281,958 (GRCm39)	missense	possibly damaging	0.94
R1075:Smyd4	UTSW	11	75,291,164 (GRCm39)	missense	probably damaging	1.00
R1215:Smyd4	UTSW	11	75,281,121 (GRCm39)	missense	possibly damaging	0.96
R1759:Smyd4	UTSW	11	75,273,192 (GRCm39)	missense	probably damaging	1.00
R2862:Smyd4	UTSW	11	75,280,962 (GRCm39)	missense	probably benign	0.12
R4033:Smyd4	UTSW	11	75,240,580 (GRCm39)	missense	probably benign	0.06
R4655:Smyd4	UTSW	11	75,281,558 (GRCm39)	missense	probably damaging	1.00
R4775:Smyd4	UTSW	11	75,282,018 (GRCm39)	missense	probably damaging	1.00
R4801:Smyd4	UTSW	11	75,294,010 (GRCm39)	missense	probably damaging	1.00
R4802:Smyd4	UTSW	11	75,294,010 (GRCm39)	missense	probably damaging	1.00
R4963:Smyd4	UTSW	11	75,273,120 (GRCm39)	missense	probably benign	0.01
R5306:Smyd4	UTSW	11	75,292,984 (GRCm39)	missense	probably benign	0.00
R5327:Smyd4	UTSW	11	75,281,765 (GRCm39)	missense	probably damaging	1.00
R5386:Smyd4	UTSW	11	75,280,982 (GRCm39)	missense	probably damaging	1.00
R5578:Smyd4	UTSW	11	75,295,602 (GRCm39)	missense	probably benign	0.03
R7038:Smyd4	UTSW	11	75,281,340 (GRCm39)	missense	probably damaging	1.00
R7271:Smyd4	UTSW	11	75,281,325 (GRCm39)	missense	possibly damaging	0.90
R7312:Smyd4	UTSW	11	75,281,082 (GRCm39)	missense	probably benign	0.18
R7576:Smyd4	UTSW	11	75,281,032 (GRCm39)	missense	probably benign	0.03
R7904:Smyd4	UTSW	11	75,240,613 (GRCm39)	missense	possibly damaging	0.80
R8387:Smyd4	UTSW	11	75,292,984 (GRCm39)	missense	probably benign	0.00
R8816:Smyd4	UTSW	11	75,281,232 (GRCm39)	missense	probably benign	0.24
R9235:Smyd4	UTSW	11	75,295,689 (GRCm39)	missense	probably benign	0.00
R9436:Smyd4	UTSW	11	75,293,017 (GRCm39)	missense	probably damaging	1.00
R9786:Smyd4	UTSW	11	75,281,625 (GRCm39)	missense	probably benign	0.06
Z1176:Smyd4	UTSW	11	75,290,440 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- TTCCTGGATGCAATGTCAATGG -3'
(R):5'- GTCACTGATTTATTTGATGCCAGGC -3'

Sequencing Primer
(F):5'- TGCAATGTCAATGGAAAGTATGG -3'
(R):5'- ATGCCAGGCTTCCTTTATAGTG -3'

Posted On

2014-12-04