Mutagenetix > Incidental Mutation

Incidental Mutation 'R3964:Timd5'

312265

Institutional Source

Beutler Lab

Gene Symbol

Timd5

Ensembl Gene

ENSMUSG00000078924

Gene Name

T cell immunoglobulin and mucin domain containing 5

Synonyms

Gm12169

MMRRC Submission

040933-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.102) question?

Stock #

R3964 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

46415078-46428983 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 46426340 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 149 (V149D)

Ref Sequence

ENSEMBL: ENSMUSP00000104851 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000109228]

AlphaFold

F2Z474

Predicted Effect

possibly damaging
Transcript: ENSMUST00000109228
AA Change: V149D

PolyPhen 2 Score 0.556 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000104851
Gene: ENSMUSG00000078924
AA Change: V149D

Domain	Start	End	E-Value	Type
IG	22	128	3.76e-8	SMART
transmembrane domain	159	181	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000119281

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.3%

Validation Efficiency

98% (64/65)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam21	C	A	12: 81,607,583 (GRCm39)	A60S	possibly damaging	Het
Arpp21	C	G	9: 111,894,844 (GRCm39)	V805L	probably damaging	Het
C1galt1c1	A	T	X: 37,720,453 (GRCm39)	V181E	probably benign	Het
Cdh18	A	T	15: 23,474,187 (GRCm39)	T686S	probably benign	Het
Cemip	T	A	7: 83,600,717 (GRCm39)	Y968F	probably benign	Het
Cep70	T	A	9: 99,180,587 (GRCm39)	F581I	probably damaging	Het
Ctc1	T	A	11: 68,921,954 (GRCm39)	V800D	probably damaging	Het
Cttnbp2nl	T	C	3: 104,913,321 (GRCm39)	K188E	probably damaging	Het
Cux1	A	G	5: 136,311,796 (GRCm39)	V1180A	probably damaging	Het
Cux2	G	T	5: 122,025,539 (GRCm39)	S43*	probably null	Het
Dhx57	T	A	17: 80,572,541 (GRCm39)	K711*	probably null	Het
Ehbp1l1	C	T	19: 5,760,601 (GRCm39)		probably null	Het
Esyt3	T	A	9: 99,202,375 (GRCm39)	D512V	probably damaging	Het
Gadl1	T	C	9: 115,794,676 (GRCm39)	S284P	probably damaging	Het
Gm14137	T	A	2: 119,005,497 (GRCm39)	S19T	probably benign	Het
Gpr141b	A	G	13: 19,913,614 (GRCm39)		noncoding transcript	Het
Gprc6a	CAAA	CA	10: 51,491,776 (GRCm39)		probably null	Het
Gsdmc2	A	G	15: 63,721,683 (GRCm39)		probably benign	Het
Hmcn1	T	C	1: 150,449,320 (GRCm39)	T110A	probably benign	Het
Il23r	G	A	6: 67,443,281 (GRCm39)	T274I	probably benign	Het
Inhbb	C	A	1: 119,345,291 (GRCm39)	G333W	probably damaging	Het
Kcnb1	C	T	2: 166,946,412 (GRCm39)	C812Y	probably damaging	Het
Lrp1b	A	G	2: 41,202,482 (GRCm39)		probably benign	Het
Med31	C	T	11: 72,102,755 (GRCm39)	A118T	probably benign	Het
Mov10l1	A	G	15: 88,896,366 (GRCm39)	I737V	probably benign	Het
Mrs2	A	G	13: 25,185,746 (GRCm39)	I142T	possibly damaging	Het
Ms4a6b	T	C	19: 11,499,098 (GRCm39)	S71P	probably benign	Het
Muc2	G	A	7: 141,286,233 (GRCm39)	R120H	probably benign	Het
Muc5b	A	T	7: 141,420,705 (GRCm39)	I4191F	possibly damaging	Het
Myrf	T	C	19: 10,196,979 (GRCm39)	E267G	probably benign	Het
Nfatc2	C	T	2: 168,346,469 (GRCm39)	S875N	probably benign	Het
Nmi	T	C	2: 51,846,081 (GRCm39)	E67G	possibly damaging	Het
Nrap	T	C	19: 56,330,576 (GRCm39)	S1126G	probably damaging	Het
Nucb2	A	G	7: 116,128,110 (GRCm39)	E273G	probably damaging	Het
Or10g9	A	T	9: 39,911,767 (GRCm39)	V252E	possibly damaging	Het
Or1j4	A	G	2: 36,740,729 (GRCm39)	T224A	probably benign	Het
Or8b1b	T	C	9: 38,375,979 (GRCm39)	I214T	probably benign	Het
Or8b51	G	A	9: 38,569,023 (GRCm39)	L222F	probably benign	Het
Pcdhga12	A	T	18: 37,900,254 (GRCm39)	Q362L	probably benign	Het
Peak1	C	T	9: 56,167,263 (GRCm39)	E222K	probably damaging	Het
Pik3r1	T	C	13: 101,825,193 (GRCm39)	E458G	possibly damaging	Het
Pls1	T	C	9: 95,667,665 (GRCm39)	Q81R	probably benign	Het
Plxdc2	T	A	2: 16,665,651 (GRCm39)	F284I	probably damaging	Het
Plxna2	C	T	1: 194,431,625 (GRCm39)	S538F	probably damaging	Het
Pole	A	G	5: 110,460,648 (GRCm39)	K1143E	probably damaging	Het
Ppfia4	A	T	1: 134,250,754 (GRCm39)	D478E	probably benign	Het
Ptprd	A	G	4: 75,978,073 (GRCm39)		probably benign	Het
Ptprj	A	G	2: 90,298,785 (GRCm39)	I315T	probably benign	Het
Rims1	T	C	1: 22,497,709 (GRCm39)		probably null	Het
Rnf13	G	A	3: 57,676,533 (GRCm39)	G63S	probably damaging	Het
Rsf1	GCG	GCGACGGCGACG	7: 97,229,114 (GRCm39)		probably benign	Het
Shld2	T	A	14: 33,981,644 (GRCm39)	Q498L	probably damaging	Het
Slc50a1	T	C	3: 89,176,093 (GRCm39)	I151V	probably benign	Het
Snx27	T	A	3: 94,438,613 (GRCm39)	R207S	probably damaging	Het
Sos1	C	T	17: 80,762,608 (GRCm39)	R73H	probably damaging	Het
Tbc1d9b	A	G	11: 50,059,523 (GRCm39)	E975G	possibly damaging	Het
Tbccd1	A	G	16: 22,660,523 (GRCm39)	S98P	probably damaging	Het
Tmx4	T	C	2: 134,441,981 (GRCm39)	I206V	possibly damaging	Het
Upf1	C	T	8: 70,791,110 (GRCm39)	R544H	probably damaging	Het
Usp19	T	A	9: 108,375,228 (GRCm39)	V818E	probably damaging	Het
Wdr38	A	G	2: 38,889,362 (GRCm39)	Y51C	probably damaging	Het
Zfp456	T	C	13: 67,514,900 (GRCm39)	T269A	probably benign	Het
Zfp628	T	C	7: 4,924,744 (GRCm39)	S989P	probably benign	Het

Other mutations in Timd5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
BB009:Timd5	UTSW	11	46,426,366 (GRCm39)	missense	probably benign	0.13
BB019:Timd5	UTSW	11	46,426,366 (GRCm39)	missense	probably benign	0.13
R0314:Timd5	UTSW	11	46,419,364 (GRCm39)	missense	probably damaging	1.00
R0959:Timd5	UTSW	11	46,427,247 (GRCm39)	nonsense	probably null
R1602:Timd5	UTSW	11	46,426,415 (GRCm39)	missense	probably benign	0.00
R1719:Timd5	UTSW	11	46,417,121 (GRCm39)	missense	probably damaging	1.00
R1917:Timd5	UTSW	11	46,419,358 (GRCm39)	missense	possibly damaging	0.82
R1918:Timd5	UTSW	11	46,419,358 (GRCm39)	missense	possibly damaging	0.82
R1919:Timd5	UTSW	11	46,419,358 (GRCm39)	missense	possibly damaging	0.82
R2202:Timd5	UTSW	11	46,419,394 (GRCm39)	missense	probably benign	0.06
R2205:Timd5	UTSW	11	46,419,394 (GRCm39)	missense	probably benign	0.06
R3965:Timd5	UTSW	11	46,426,340 (GRCm39)	missense	possibly damaging	0.56
R3966:Timd5	UTSW	11	46,426,340 (GRCm39)	missense	possibly damaging	0.56
R5022:Timd5	UTSW	11	46,419,359 (GRCm39)	missense	probably damaging	0.97
R5023:Timd5	UTSW	11	46,419,359 (GRCm39)	missense	probably damaging	0.97
R7294:Timd5	UTSW	11	46,426,439 (GRCm39)	missense	probably benign	0.41
R7441:Timd5	UTSW	11	46,419,382 (GRCm39)	nonsense	probably null
R7932:Timd5	UTSW	11	46,426,366 (GRCm39)	missense	probably benign	0.13
R8027:Timd5	UTSW	11	46,428,744 (GRCm39)	missense	probably benign
R9306:Timd5	UTSW	11	46,419,519 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- CTAGAGTAGTGCAGCCCAATAC -3'
(R):5'- GAAGAGTAAAACATTTTGCCCTACC -3'

Sequencing Primer
(F):5'- GTCCTAGAACTGCTGTTTAGACCAG -3'
(R):5'- CCAAACAAACTTCCTTGGATTTTG -3'

Posted On

2015-04-29