Mutagenetix > Incidental Mutation

Incidental Mutation 'R6077:Raet1e'

482799

Institutional Source

Beutler Lab

Gene Symbol

Raet1e

Ensembl Gene

ENSMUSG00000053219

Gene Name

retinoic acid early transcript 1E

Synonyms

Rae-1 epsilon

MMRRC Submission

044238-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.670) question?

Stock #

R6077 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

22034441-22059820 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 22057887 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Asparagine at position 218 (T218N)

Ref Sequence

ENSEMBL: ENSMUSP00000138022 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065527] [ENSMUST00000105522] [ENSMUST00000178026] [ENSMUST00000180648] [ENSMUST00000181645]

AlphaFold

Q9CZQ6

Predicted Effect

possibly damaging
Transcript: ENSMUST00000065527
AA Change: T218N

PolyPhen 2 Score 0.719 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000066627
Gene: ENSMUSG00000053219
AA Change: T218N

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:MHC_I_2	31	202	1e-121	PFAM
low complexity region	209	229	N/A	INTRINSIC
transmembrane domain	233	250	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000105522

SMART Domains

Protein: ENSMUSP00000101161
Gene: ENSMUSG00000075297

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
PDB:4G59\|B	29	195	2e-9	PDB
transmembrane domain	211	233	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000178026
AA Change: T218N

PolyPhen 2 Score 0.719 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000136032
Gene: ENSMUSG00000053219
AA Change: T218N

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:MHC_I_2	31	202	7.3e-112	PFAM
low complexity region	209	229	N/A	INTRINSIC
transmembrane domain	233	250	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000180648

SMART Domains

Protein: ENSMUSP00000137946
Gene: ENSMUSG00000053219

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:MHC_I_2	31	66	3.8e-20	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000181645
AA Change: T218N

PolyPhen 2 Score 0.719 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000138022
Gene: ENSMUSG00000053219
AA Change: T218N

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:MHC_I_2	31	202	1e-121	PFAM
low complexity region	209	229	N/A	INTRINSIC
transmembrane domain	233	250	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 95.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acly	C	T	11: 100,410,583 (GRCm39)	V132I	probably benign	Het
Adgrb3	A	T	1: 25,133,081 (GRCm39)	L1335*	probably null	Het
Adgre5	A	G	8: 84,454,595 (GRCm39)	S301P	probably benign	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Aldh1b1	A	G	4: 45,802,525 (GRCm39)	Y21C	possibly damaging	Het
Ank3	G	A	10: 69,838,395 (GRCm39)	R1566K	possibly damaging	Het
Ankrd7	T	A	6: 18,868,071 (GRCm39)	S112R	probably benign	Het
Arhgap23	T	A	11: 97,382,058 (GRCm39)		probably null	Het
Atp4a	G	A	7: 30,415,344 (GRCm39)	M321I	probably benign	Het
C2cd4d	A	T	3: 94,271,615 (GRCm39)	R294W	probably damaging	Het
Carns1	T	C	19: 4,220,875 (GRCm39)	I352V	probably benign	Het
Cdh17	T	A	4: 11,803,969 (GRCm39)	S547R	probably benign	Het
Cdyl2	G	T	8: 117,316,129 (GRCm39)	N286K	probably damaging	Het
Fam186a	C	A	15: 99,840,584 (GRCm39)	V1887L	possibly damaging	Het
Fat4	C	T	3: 39,056,951 (GRCm39)	R4216C	probably damaging	Het
Fcamr	T	C	1: 130,740,663 (GRCm39)	W361R	probably damaging	Het
Helz2	G	A	2: 180,874,831 (GRCm39)	P1888S	probably benign	Het
Itih1	A	T	14: 30,651,833 (GRCm39)	F840L	possibly damaging	Het
Kansl2	T	C	15: 98,429,312 (GRCm39)	D146G	probably benign	Het
Kcnk18	T	C	19: 59,223,746 (GRCm39)	V297A	probably damaging	Het
Kif1a	T	C	1: 92,982,618 (GRCm39)	T720A	possibly damaging	Het
Kl	C	G	5: 150,876,466 (GRCm39)	F95L	probably damaging	Het
Large2	C	T	2: 92,196,915 (GRCm39)	R423K	probably benign	Het
Lgals3bp	A	G	11: 118,290,568 (GRCm39)	V13A	probably damaging	Het
Lrrd1	A	G	5: 3,900,837 (GRCm39)	I381V	probably benign	Het
Mastl	A	T	2: 23,045,806 (GRCm39)	I23N	probably damaging	Het
Mettl23	T	C	11: 116,739,728 (GRCm39)	V1A	possibly damaging	Het
Mindy2	A	G	9: 70,538,363 (GRCm39)	V324A	probably damaging	Het
Mtmr4	T	A	11: 87,501,845 (GRCm39)	L633Q	probably damaging	Het
Myh1	G	A	11: 67,102,273 (GRCm39)	E855K	probably damaging	Het
Nin	C	T	12: 70,066,006 (GRCm39)	A2026T	probably damaging	Het
Nova2	G	A	7: 18,691,794 (GRCm39)	A244T	unknown	Het
Or2w1	A	T	13: 21,317,463 (GRCm39)	I173F	probably benign	Het
Otulin	T	C	15: 27,611,696 (GRCm39)	T166A	probably benign	Het
P2ry14	T	A	3: 59,022,798 (GRCm39)	R230W	probably damaging	Het
Pcsk4	T	C	10: 80,162,073 (GRCm39)	E83G	probably damaging	Het
Rsf1	GCGGCGGC	GCGGCGGCGTCGGCGGC	7: 97,229,135 (GRCm39)		probably benign	Het
Safb	G	A	17: 56,909,956 (GRCm39)		probably benign	Het
Scn7a	T	A	2: 66,527,940 (GRCm39)	N850I	probably damaging	Het
Slc16a4	A	G	3: 107,208,381 (GRCm39)	D297G	possibly damaging	Het
Tcf7l2	A	T	19: 55,905,868 (GRCm39)	K278*	probably null	Het
Tesmin	T	C	19: 3,439,260 (GRCm39)	V104A	possibly damaging	Het
Tiam1	A	G	16: 89,594,918 (GRCm39)		probably null	Het
Tmc4	T	C	7: 3,670,526 (GRCm39)	T522A	probably damaging	Het
Tmprss3	T	A	17: 31,408,141 (GRCm39)	I274F	possibly damaging	Het
Topbp1	A	G	9: 103,210,189 (GRCm39)	K916E	probably damaging	Het
Trdv1	A	G	14: 54,119,513 (GRCm39)	D58G	probably benign	Het
Ube2g2	G	T	10: 77,458,139 (GRCm39)		probably benign	Het
Unc5d	G	T	8: 29,165,335 (GRCm39)	Q747K	possibly damaging	Het
Xpo6	A	G	7: 125,709,124 (GRCm39)	V819A	possibly damaging	Het
Zan	T	A	5: 137,412,559 (GRCm39)		probably benign	Het
Zfp317	T	A	9: 19,558,184 (GRCm39)	W133R	probably benign	Het

Other mutations in Raet1e

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01077:Raet1e	APN	10	22,057,219 (GRCm39)	missense	probably damaging	1.00
IGL02406:Raet1e	APN	10	22,056,535 (GRCm39)	missense	probably damaging	1.00
IGL02484:Raet1e	APN	10	22,056,666 (GRCm39)	missense	probably benign	0.01
R0049:Raet1e	UTSW	10	22,056,761 (GRCm39)	missense	possibly damaging	0.65
R0238:Raet1e	UTSW	10	22,056,761 (GRCm39)	missense	possibly damaging	0.65
R0238:Raet1e	UTSW	10	22,056,761 (GRCm39)	missense	possibly damaging	0.65
R0239:Raet1e	UTSW	10	22,056,761 (GRCm39)	missense	possibly damaging	0.65
R0639:Raet1e	UTSW	10	22,050,274 (GRCm39)	missense	probably damaging	0.99
R0885:Raet1e	UTSW	10	22,057,986 (GRCm39)	unclassified	probably benign
R3704:Raet1e	UTSW	10	22,056,744 (GRCm39)	missense	probably benign	0.20
R4764:Raet1e	UTSW	10	22,057,231 (GRCm39)	missense	probably damaging	1.00
R4799:Raet1e	UTSW	10	22,057,199 (GRCm39)	missense	probably damaging	1.00
R5566:Raet1e	UTSW	10	22,050,304 (GRCm39)	missense	probably damaging	1.00
R6034:Raet1e	UTSW	10	22,057,990 (GRCm39)	makesense	probably null
R6034:Raet1e	UTSW	10	22,057,990 (GRCm39)	makesense	probably null
R6238:Raet1e	UTSW	10	22,056,770 (GRCm39)	missense	probably benign	0.01
R6408:Raet1e	UTSW	10	22,056,645 (GRCm39)	missense	probably benign	0.29
R6939:Raet1e	UTSW	10	22,050,256 (GRCm39)	missense	possibly damaging	0.86
R7147:Raet1e	UTSW	10	22,057,179 (GRCm39)	missense	probably benign	0.29
R8026:Raet1e	UTSW	10	22,057,198 (GRCm39)	missense	probably damaging	1.00
R8771:Raet1e	UTSW	10	22,057,041 (GRCm39)	missense	probably damaging	1.00
R9303:Raet1e	UTSW	10	22,057,872 (GRCm39)	missense	possibly damaging	0.86
Z1088:Raet1e	UTSW	10	22,057,850 (GRCm39)	missense	possibly damaging	0.56

Predicted Primers

PCR Primer
(F):5'- ATCATGTCTCTCTACTCGGGAC -3'
(R):5'- TCCAATATGGGGAGGAGAATTCC -3'

Sequencing Primer
(F):5'- CTCTACTCGGGACTTTGTAAAATAG -3'
(R):5'- GGGACACCTATTGAAAGTCCTCTG -3'

Posted On

2017-07-14