Incidental Mutation 'R0607:Xab2'
ID 54277
Institutional Source Beutler Lab
Gene Symbol Xab2
Ensembl Gene ENSMUSG00000019470
Gene Name XPA binding protein 2
Synonyms 0610041O14Rik
MMRRC Submission 038796-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R0607 (G1)
Quality Score 222
Status Not validated
Chromosome 8
Chromosomal Location 3660089-3671311 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to C at 3663605 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Lysine at position 408 (N408K)
Ref Sequence ENSEMBL: ENSMUSP00000019614 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000019614] [ENSMUST00000057028] [ENSMUST00000159235] [ENSMUST00000207432] [ENSMUST00000208240] [ENSMUST00000207970] [ENSMUST00000207533] [ENSMUST00000207712] [ENSMUST00000207077] [ENSMUST00000171962]
AlphaFold Q9DCD2
Predicted Effect probably benign
Transcript: ENSMUST00000019614
AA Change: N408K

PolyPhen 2 Score 0.053 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000019614
Gene: ENSMUSG00000019470
AA Change: N408K

DomainStartEndE-ValueType
HAT 48 80 7.56e0 SMART
HAT 93 122 1.92e2 SMART
HAT 124 158 4.89e-2 SMART
HAT 270 305 3.82e-4 SMART
low complexity region 316 333 N/A INTRINSIC
HAT 409 445 1.88e1 SMART
HAT 447 496 2.32e2 SMART
HAT 498 530 1.56e1 SMART
HAT 532 566 5.84e0 SMART
HAT 571 605 3.62e-5 SMART
Blast:HAT 607 641 3e-14 BLAST
Blast:HAT 643 677 2e-15 BLAST
HAT 679 713 2.77e-1 SMART
low complexity region 771 785 N/A INTRINSIC
low complexity region 823 836 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000057028
SMART Domains Protein: ENSMUSP00000058958
Gene: ENSMUSG00000044433

DomainStartEndE-ValueType
low complexity region 30 45 N/A INTRINSIC
low complexity region 90 109 N/A INTRINSIC
Pfam:CH 166 315 5.5e-27 PFAM
Pfam:CAMSAP_CH 214 296 1.2e-29 PFAM
low complexity region 359 373 N/A INTRINSIC
coiled coil region 595 633 N/A INTRINSIC
low complexity region 645 655 N/A INTRINSIC
coiled coil region 696 727 N/A INTRINSIC
low complexity region 749 779 N/A INTRINSIC
low complexity region 828 837 N/A INTRINSIC
low complexity region 866 881 N/A INTRINSIC
coiled coil region 900 943 N/A INTRINSIC
low complexity region 944 965 N/A INTRINSIC
low complexity region 1002 1024 N/A INTRINSIC
CAMSAP_CKK 1111 1240 1.29e-86 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000122654
Predicted Effect probably benign
Transcript: ENSMUST00000159235
SMART Domains Protein: ENSMUSP00000124237
Gene: ENSMUSG00000019470

DomainStartEndE-ValueType
Blast:HAT 12 47 2e-13 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000159548
SMART Domains Protein: ENSMUSP00000124202
Gene: ENSMUSG00000019470

DomainStartEndE-ValueType
Blast:HAT 10 44 4e-12 BLAST
HAT 46 78 7.56e0 SMART
HAT 91 120 1.92e2 SMART
HAT 122 156 4.89e-2 SMART
Blast:HAT 157 190 4e-12 BLAST
Pfam:TPR_2 243 272 2.2e-6 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159909
Predicted Effect noncoding transcript
Transcript: ENSMUST00000163038
Predicted Effect probably benign
Transcript: ENSMUST00000207152
Predicted Effect probably benign
Transcript: ENSMUST00000207432
Predicted Effect noncoding transcript
Transcript: ENSMUST00000207930
Predicted Effect noncoding transcript
Transcript: ENSMUST00000208064
Predicted Effect probably benign
Transcript: ENSMUST00000208240
Predicted Effect probably benign
Transcript: ENSMUST00000207970
Predicted Effect probably benign
Transcript: ENSMUST00000207533
Predicted Effect probably benign
Transcript: ENSMUST00000207712
Predicted Effect probably benign
Transcript: ENSMUST00000207077
Predicted Effect probably benign
Transcript: ENSMUST00000171962
SMART Domains Protein: ENSMUSP00000125993
Gene: ENSMUSG00000044433

DomainStartEndE-ValueType
low complexity region 30 45 N/A INTRINSIC
low complexity region 90 109 N/A INTRINSIC
Pfam:CAMSAP_CH 214 296 6e-31 PFAM
low complexity region 360 374 N/A INTRINSIC
Pfam:CAMSAP_CC1 587 645 1.1e-27 PFAM
low complexity region 646 656 N/A INTRINSIC
coiled coil region 697 728 N/A INTRINSIC
low complexity region 750 780 N/A INTRINSIC
low complexity region 829 838 N/A INTRINSIC
low complexity region 867 882 N/A INTRINSIC
coiled coil region 901 944 N/A INTRINSIC
low complexity region 945 966 N/A INTRINSIC
low complexity region 1003 1025 N/A INTRINSIC
CAMSAP_CKK 1112 1241 1.29e-86 SMART
Coding Region Coverage
  • 1x: 99.7%
  • 3x: 99.1%
  • 10x: 97.6%
  • 20x: 95.1%
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygous null embryos die by the blastocyst stage (E3.5) and some eight-cell stage embryos do not undergo compaction. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 147 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2900092C05Rik A G 7: 12,288,625 (GRCm39) E146G probably benign Het
Abca4 G A 3: 121,950,081 (GRCm39) G594S probably damaging Het
Acacb T C 5: 114,338,362 (GRCm39) Y726H probably damaging Het
Adam20 T A 8: 41,248,517 (GRCm39) M209K probably benign Het
Adam29 A G 8: 56,326,310 (GRCm39) V48A probably damaging Het
Adss2 A G 1: 177,595,253 (GRCm39) V429A possibly damaging Het
Aff1 T C 5: 103,976,320 (GRCm39) S481P probably damaging Het
Akr1c19 G A 13: 4,288,459 (GRCm39) A146T probably benign Het
Ankhd1 G T 18: 36,773,333 (GRCm39) V59F probably damaging Het
Ankmy1 T G 1: 92,816,397 (GRCm39) Y239S probably damaging Het
Ankrd24 G T 10: 81,474,142 (GRCm39) C19F probably damaging Het
Apaf1 T C 10: 90,845,065 (GRCm39) H1002R probably damaging Het
Apc2 T C 10: 80,149,935 (GRCm39) I1663T probably benign Het
Apcdd1 A G 18: 63,084,967 (GRCm39) N388S possibly damaging Het
Arap2 G A 5: 62,763,474 (GRCm39) P1557S possibly damaging Het
Armc2 T A 10: 41,798,691 (GRCm39) H706L probably benign Het
Arrb1 T C 7: 99,237,403 (GRCm39) probably null Het
Atl3 T C 19: 7,507,031 (GRCm39) probably null Het
B9d2 A G 7: 25,382,757 (GRCm39) T44A probably damaging Het
Btbd3 C T 2: 138,125,736 (GRCm39) R307W possibly damaging Het
C1galt1 T C 6: 7,871,193 (GRCm39) I343T probably benign Het
Cacna1a A G 8: 85,356,460 (GRCm39) D1901G probably damaging Het
Ccdc42 C T 11: 68,488,536 (GRCm39) Q312* probably null Het
Cdh18 T C 15: 23,410,876 (GRCm39) Y454H probably benign Het
Celf5 G A 10: 81,301,839 (GRCm39) T317I probably damaging Het
Celsr2 A T 3: 108,311,211 (GRCm39) probably null Het
Cenpf A T 1: 189,414,660 (GRCm39) probably null Het
Cep350 T C 1: 155,747,794 (GRCm39) D2042G probably damaging Het
Chd3 T C 11: 69,235,184 (GRCm39) D2054G probably damaging Het
Chgb A G 2: 132,635,255 (GRCm39) H399R probably benign Het
Clp1 C T 2: 84,555,935 (GRCm39) A182T possibly damaging Het
Col15a1 A G 4: 47,282,654 (GRCm39) N777S probably damaging Het
Coq6 A G 12: 84,415,412 (GRCm39) D145G possibly damaging Het
Csf2rb2 T C 15: 78,172,108 (GRCm39) Y325C probably benign Het
Ctnna2 T C 6: 76,879,413 (GRCm39) T824A probably benign Het
Cyp4x1 T A 4: 114,970,023 (GRCm39) D368V probably damaging Het
D430041D05Rik C T 2: 104,063,790 (GRCm39) R1354H probably damaging Het
D6Ertd527e A C 6: 87,088,887 (GRCm39) D350A unknown Het
Ddx24 A G 12: 103,385,326 (GRCm39) Y426H possibly damaging Het
Dexi G T 16: 10,360,426 (GRCm39) Y43* probably null Het
Dgka A G 10: 128,556,338 (GRCm39) probably null Het
Dhx38 A T 8: 110,285,575 (GRCm39) D419E probably benign Het
Dlg1 G A 16: 31,656,992 (GRCm39) V596I possibly damaging Het
Dlg1 C A 16: 31,484,398 (GRCm39) Q9K probably benign Het
Dnah11 A C 12: 118,046,246 (GRCm39) W1731G probably damaging Het
Dnhd1 T A 7: 105,369,995 (GRCm39) N4473K probably benign Het
Dync2h1 A C 9: 7,051,480 (GRCm39) S3152A probably benign Het
Egfl7 C T 2: 26,479,452 (GRCm39) T68I probably damaging Het
Eif2a G A 3: 58,463,073 (GRCm39) probably null Het
Emb G A 13: 117,369,286 (GRCm39) V56I possibly damaging Het
Enpp4 A T 17: 44,410,386 (GRCm39) C397S probably damaging Het
Entpd3 A G 9: 120,386,471 (GRCm39) T151A possibly damaging Het
Ero1b A G 13: 12,589,747 (GRCm39) D50G probably damaging Het
Fam219a A G 4: 41,520,242 (GRCm39) *169Q probably null Het
Fga G A 3: 82,935,869 (GRCm39) G32E probably damaging Het
Fkbpl T C 17: 34,864,333 (GRCm39) F34L probably benign Het
Fsd2 T A 7: 81,194,765 (GRCm39) D466V probably damaging Het
Gja1 A G 10: 56,264,166 (GRCm39) Y175C possibly damaging Het
Gm5478 T A 15: 101,553,059 (GRCm39) I338F probably damaging Het
Greb1 T A 12: 16,732,194 (GRCm39) Y1589F probably damaging Het
Grk3 C T 5: 113,067,919 (GRCm39) E537K probably damaging Het
H2-K2 G T 17: 34,218,474 (GRCm39) D127E probably damaging Het
Hcrtr2 A G 9: 76,137,966 (GRCm39) L383P probably benign Het
Hmcn1 C T 1: 150,514,651 (GRCm39) V3574M probably benign Het
Ikbke A T 1: 131,197,921 (GRCm39) probably null Het
Il1r2 A G 1: 40,144,615 (GRCm39) K101E probably benign Het
Itga11 A T 9: 62,681,653 (GRCm39) H1054L probably benign Het
Kif13a A T 13: 46,956,187 (GRCm39) V539D probably damaging Het
Kifc1 G A 17: 34,105,621 (GRCm39) T62I probably damaging Het
Klhl28 A G 12: 64,998,529 (GRCm39) Y322H probably damaging Het
Klhl6 C A 16: 19,775,764 (GRCm39) D265Y possibly damaging Het
Krt86 T A 15: 101,377,412 (GRCm39) C479S unknown Het
Lama2 C T 10: 27,065,127 (GRCm39) R1179H probably benign Het
Lce6a A T 3: 92,527,635 (GRCm39) H57Q probably benign Het
Lcn11 T C 2: 25,669,305 (GRCm39) V154A probably benign Het
Lnpep A T 17: 17,758,816 (GRCm39) F843I probably damaging Het
Lrrc49 C T 9: 60,573,640 (GRCm39) V281I probably benign Het
Lrrtm1 C A 6: 77,221,611 (GRCm39) A356E probably damaging Het
Map3k1 A C 13: 111,900,044 (GRCm39) H493Q probably benign Het
Mcm4 A T 16: 15,449,979 (GRCm39) probably null Het
Mdn1 C T 4: 32,712,014 (GRCm39) P1844L probably damaging Het
Mdn1 T A 4: 32,732,829 (GRCm39) D3076E probably benign Het
Med6 A T 12: 81,635,798 (GRCm39) L27H probably damaging Het
Mrtfb A G 16: 13,199,465 (GRCm39) E106G probably damaging Het
Myo7a T A 7: 97,721,153 (GRCm39) T1271S probably damaging Het
Myo9a T A 9: 59,829,076 (GRCm39) M2376K probably benign Het
Nell2 G A 15: 95,127,095 (GRCm39) T760I probably benign Het
Neurod6 C T 6: 55,656,572 (GRCm39) A22T probably benign Het
Nlrp10 T C 7: 108,523,492 (GRCm39) K663E probably benign Het
Nopchap1 T C 10: 83,197,961 (GRCm39) S56P probably benign Het
Npr3 T A 15: 11,845,368 (GRCm39) K501N probably benign Het
Nr2f2 C A 7: 70,004,460 (GRCm39) R264L probably damaging Het
Nup35 T A 2: 80,472,984 (GRCm39) M19K probably benign Het
Oacyl A T 18: 65,880,962 (GRCm39) Q592L possibly damaging Het
Or10a4 T A 7: 106,696,933 (GRCm39) I87K probably benign Het
Or1ad6 C A 11: 50,860,670 (GRCm39) A275D possibly damaging Het
Or2v1 C G 11: 49,025,549 (GRCm39) H177D probably damaging Het
Or4a71 A G 2: 89,358,451 (GRCm39) V101A possibly damaging Het
Or5af1 T A 11: 58,722,798 (GRCm39) S273T probably damaging Het
Or5b105 G A 19: 13,080,642 (GRCm39) R3C possibly damaging Het
Or5b122 T A 19: 13,563,534 (GRCm39) Y289N probably damaging Het
Or5p51 A G 7: 107,444,776 (GRCm39) S55P probably damaging Het
Or6c76b T G 10: 129,693,070 (GRCm39) S228A possibly damaging Het
Or8k25 T A 2: 86,243,514 (GRCm39) N294I probably damaging Het
Or9k7 T C 10: 130,046,939 (GRCm39) E20G probably benign Het
Patl2 T C 2: 121,957,150 (GRCm39) Y128C probably benign Het
Pcdhac2 A G 18: 37,278,942 (GRCm39) I641V probably benign Het
Polr2b T C 5: 77,461,006 (GRCm39) probably benign Het
Pot1b A T 17: 55,972,765 (GRCm39) I469N probably damaging Het
Prdm11 G T 2: 92,844,130 (GRCm39) D33E possibly damaging Het
Prkdc A G 16: 15,589,921 (GRCm39) S2595G probably damaging Het
Prrc1 G A 18: 57,507,622 (GRCm39) V259I possibly damaging Het
Prrc2b G T 2: 32,103,882 (GRCm39) R1120L probably damaging Het
Prss38 T C 11: 59,266,369 (GRCm39) S30G possibly damaging Het
Raph1 A T 1: 60,565,028 (GRCm39) L153Q probably damaging Het
Reck A G 4: 43,940,719 (GRCm39) T843A probably benign Het
Rgs7bp T C 13: 105,103,610 (GRCm39) N164D probably benign Het
Rpusd4 C A 9: 35,179,289 (GRCm39) A35D possibly damaging Het
Setd1b T C 5: 123,298,014 (GRCm39) probably benign Het
Siglec15 G T 18: 78,089,352 (GRCm39) D297E probably benign Het
Skint7 T A 4: 111,834,656 (GRCm39) C13* probably null Het
Slc5a12 A G 2: 110,463,088 (GRCm39) M395V probably benign Het
Sohlh2 C A 3: 55,115,104 (GRCm39) S363Y probably damaging Het
Srgap3 A T 6: 112,700,080 (GRCm39) V966E probably damaging Het
Stk4 C T 2: 163,940,462 (GRCm39) P266L probably damaging Het
Stxbp5l G A 16: 36,962,794 (GRCm39) H754Y probably benign Het
Synpo2l A T 14: 20,710,748 (GRCm39) M624K probably damaging Het
Tas2r136 T C 6: 132,754,375 (GRCm39) I251V probably benign Het
Tecpr1 C T 5: 144,149,408 (GRCm39) V340M probably damaging Het
Tecta C T 9: 42,299,501 (GRCm39) G196S probably damaging Het
Tex55 A C 16: 38,648,726 (GRCm39) S128A probably benign Het
Thsd7a T A 6: 12,331,541 (GRCm39) probably null Het
Timeless T C 10: 128,082,203 (GRCm39) V577A probably benign Het
Tln1 A T 4: 43,553,071 (GRCm39) V340E probably damaging Het
Tmem132c T A 5: 127,640,617 (GRCm39) Y929* probably null Het
Tmprss7 C T 16: 45,489,914 (GRCm39) R436Q probably damaging Het
Tnik A C 3: 28,704,308 (GRCm39) K989T probably damaging Het
Tnxb T A 17: 34,890,892 (GRCm39) Y412N probably damaging Het
Trmt44 A G 5: 35,726,103 (GRCm39) probably null Het
Trpm6 C A 19: 18,849,585 (GRCm39) T1704N probably benign Het
Tsc2 A T 17: 24,840,686 (GRCm39) V391E probably damaging Het
Ttc22 T C 4: 106,496,510 (GRCm39) V520A possibly damaging Het
Ttc3 T A 16: 94,257,644 (GRCm39) Y1650* probably null Het
Vmn2r24 A G 6: 123,763,893 (GRCm39) T257A probably benign Het
Zbtb42 A T 12: 112,647,061 (GRCm39) Y412F probably benign Het
Zfp282 A G 6: 47,857,303 (GRCm39) N179D probably damaging Het
Zfp62 C A 11: 49,106,227 (GRCm39) T106K probably benign Het
Other mutations in Xab2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00924:Xab2 APN 8 3,661,723 (GRCm39) missense probably damaging 1.00
IGL01308:Xab2 APN 8 3,666,332 (GRCm39) missense probably benign 0.07
IGL01324:Xab2 APN 8 3,671,232 (GRCm39) missense possibly damaging 0.80
IGL01340:Xab2 APN 8 3,664,381 (GRCm39) missense probably damaging 1.00
IGL01613:Xab2 APN 8 3,660,880 (GRCm39) missense probably benign 0.01
IGL02622:Xab2 APN 8 3,661,699 (GRCm39) missense probably benign 0.01
IGL02809:Xab2 APN 8 3,660,175 (GRCm39) missense probably benign 0.00
R0066:Xab2 UTSW 8 3,663,880 (GRCm39) missense probably damaging 1.00
R0066:Xab2 UTSW 8 3,663,880 (GRCm39) missense probably damaging 1.00
R0544:Xab2 UTSW 8 3,660,994 (GRCm39) missense probably damaging 1.00
R0735:Xab2 UTSW 8 3,663,649 (GRCm39) missense possibly damaging 0.50
R0943:Xab2 UTSW 8 3,663,667 (GRCm39) missense probably benign 0.00
R1507:Xab2 UTSW 8 3,666,031 (GRCm39) missense possibly damaging 0.93
R1664:Xab2 UTSW 8 3,669,068 (GRCm39) splice site probably null
R1954:Xab2 UTSW 8 3,666,094 (GRCm39) missense probably damaging 0.96
R1955:Xab2 UTSW 8 3,666,094 (GRCm39) missense probably damaging 0.96
R3767:Xab2 UTSW 8 3,669,053 (GRCm39) missense probably damaging 1.00
R4399:Xab2 UTSW 8 3,664,244 (GRCm39) critical splice donor site probably null
R4421:Xab2 UTSW 8 3,664,244 (GRCm39) critical splice donor site probably null
R4440:Xab2 UTSW 8 3,666,353 (GRCm39) missense probably benign 0.01
R4553:Xab2 UTSW 8 3,661,015 (GRCm39) missense probably benign 0.00
R4580:Xab2 UTSW 8 3,660,162 (GRCm39) missense probably damaging 1.00
R4608:Xab2 UTSW 8 3,668,105 (GRCm39) missense probably benign 0.23
R4707:Xab2 UTSW 8 3,668,117 (GRCm39) missense possibly damaging 0.92
R5522:Xab2 UTSW 8 3,661,718 (GRCm39) missense probably benign 0.06
R6063:Xab2 UTSW 8 3,663,051 (GRCm39) missense possibly damaging 0.93
R6273:Xab2 UTSW 8 3,661,822 (GRCm39) missense probably damaging 1.00
R6487:Xab2 UTSW 8 3,663,879 (GRCm39) missense possibly damaging 0.75
R7140:Xab2 UTSW 8 3,668,117 (GRCm39) missense possibly damaging 0.92
R7648:Xab2 UTSW 8 3,660,638 (GRCm39) missense probably benign 0.00
R7767:Xab2 UTSW 8 3,669,018 (GRCm39) missense probably benign 0.08
R7992:Xab2 UTSW 8 3,668,622 (GRCm39) missense possibly damaging 0.81
R8116:Xab2 UTSW 8 3,663,830 (GRCm39) missense probably damaging 1.00
R8193:Xab2 UTSW 8 3,663,389 (GRCm39) missense probably benign
R8717:Xab2 UTSW 8 3,663,845 (GRCm39) missense probably benign 0.14
R8759:Xab2 UTSW 8 3,661,672 (GRCm39) missense probably benign
R8840:Xab2 UTSW 8 3,663,254 (GRCm39) missense probably benign 0.18
R8952:Xab2 UTSW 8 3,663,875 (GRCm39) missense probably damaging 1.00
R9044:Xab2 UTSW 8 3,668,641 (GRCm39) missense probably benign 0.21
R9287:Xab2 UTSW 8 3,663,000 (GRCm39) missense possibly damaging 0.94
R9596:Xab2 UTSW 8 3,663,018 (GRCm39) missense probably damaging 0.96
R9799:Xab2 UTSW 8 3,668,182 (GRCm39) missense probably benign 0.28
Z1176:Xab2 UTSW 8 3,668,969 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GGTCATCCACCTGCTTGAAGTTCAC -3'
(R):5'- ATAGTGTCCTTCTGCGCCAGAACC -3'

Sequencing Primer
(F):5'- CTGCTTGAAGTTCACCTTGG -3'
(R):5'- TGTGATGGTTCCAACCCG -3'
Posted On 2013-07-11