Mutagenetix > Incidental Mutation

Incidental Mutation 'R8152:Cd72'

632999

Institutional Source

Beutler Lab

Gene Symbol

Cd72

Ensembl Gene

ENSMUSG00000028459

Gene Name

CD72 antigen

Synonyms

Ly-m19, Ly-19, Ly-32, Lyb-2

MMRRC Submission

067578-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.172) question?

Stock #

R8152 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

43447724-43454720 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 43452601 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 131 (I131F)

Ref Sequence

ENSEMBL: ENSMUSP00000030179 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030179] [ENSMUST00000060864] [ENSMUST00000098104] [ENSMUST00000098105] [ENSMUST00000107925] [ENSMUST00000107926] [ENSMUST00000138981]

AlphaFold

P21855

Predicted Effect

possibly damaging
Transcript: ENSMUST00000030179
AA Change: I131F

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000030179
Gene: ENSMUSG00000028459
AA Change: I131F

Domain	Start	End	E-Value	Type
low complexity region	44	60	N/A	INTRINSIC
transmembrane domain	96	118	N/A	INTRINSIC
coiled coil region	137	223	N/A	INTRINSIC
CLECT	232	348	2.28e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000060864

SMART Domains

Protein: ENSMUSP00000050087
Gene: ENSMUSG00000028458

Domain	Start	End	E-Value	Type
low complexity region	2	33	N/A	INTRINSIC
Pfam:Pkinase	52	306	5.4e-46	PFAM
Pfam:Pkinase_Tyr	52	306	3.1e-47	PFAM
low complexity region	316	330	N/A	INTRINSIC
low complexity region	345	370	N/A	INTRINSIC
low complexity region	403	424	N/A	INTRINSIC
low complexity region	472	490	N/A	INTRINSIC
low complexity region	513	525	N/A	INTRINSIC
low complexity region	549	565	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000098104
AA Change: I77F

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000095708
Gene: ENSMUSG00000028459
AA Change: I77F

Domain	Start	End	E-Value	Type
low complexity region	44	60	N/A	INTRINSIC
coiled coil region	83	169	N/A	INTRINSIC
CLECT	178	287	2.48e-6	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000098105
AA Change: I107F

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000095709
Gene: ENSMUSG00000028459
AA Change: I107F

Domain	Start	End	E-Value	Type
low complexity region	44	60	N/A	INTRINSIC
transmembrane domain	72	94	N/A	INTRINSIC
coiled coil region	113	199	N/A	INTRINSIC
CLECT	208	324	2.28e-5	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107925
AA Change: I131F

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000103558
Gene: ENSMUSG00000028459
AA Change: I131F

Domain	Start	End	E-Value	Type
low complexity region	44	60	N/A	INTRINSIC
transmembrane domain	96	118	N/A	INTRINSIC
coiled coil region	137	223	N/A	INTRINSIC
CLECT	232	334	2.65e-2	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107926
AA Change: I131F

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000103559
Gene: ENSMUSG00000028459
AA Change: I131F

Domain	Start	End	E-Value	Type
low complexity region	44	60	N/A	INTRINSIC
transmembrane domain	96	118	N/A	INTRINSIC
coiled coil region	137	223	N/A	INTRINSIC
CLECT	232	341	2.48e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000138981

SMART Domains

Protein: ENSMUSP00000121067
Gene: ENSMUSG00000028458

Domain	Start	End	E-Value	Type
low complexity region	2	33	N/A	INTRINSIC
Pfam:Pkinase	52	174	7.6e-29	PFAM
Pfam:Pkinase_Tyr	52	175	1.5e-26	PFAM

Coding Region Coverage

1x: 99.8%
3x: 99.6%
10x: 98.3%
20x: 92.4%

Validation Efficiency

99% (74/75)

MGI Phenotype

PHENOTYPE: Homozygous mutation of this gene results in impaired B cell development and delayed maturation, resulting in reduced numbers of mature B cells and an expansion of pre-B cells. Mice have fewer peripheral mature B-2 cells and more B-1 cells. B cells are hyperproliferative in response to stimuli. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aasdh	A	G	5: 77,044,305 (GRCm39)	L195P	probably damaging	Het
Adgrb1	T	C	15: 74,413,460 (GRCm39)	V548A	probably benign	Het
Adgrb1	T	C	15: 74,416,849 (GRCm39)	I752T	probably damaging	Het
Adgrb3	T	C	1: 25,260,838 (GRCm39)		probably null	Het
Adh6a	G	T	3: 138,033,275 (GRCm39)		probably null	Het
Aldh18a1	A	G	19: 40,553,456 (GRCm39)	S431P	probably benign	Het
Arap3	T	C	18: 38,124,410 (GRCm39)	R310G	possibly damaging	Het
Atad5	T	C	11: 79,985,996 (GRCm39)	V361A	possibly damaging	Het
Atp8a1	C	A	5: 67,919,925 (GRCm39)	M380I		Het
Calcrl	C	T	2: 84,169,593 (GRCm39)	V363M	possibly damaging	Het
Camsap1	G	T	2: 25,830,253 (GRCm39)	D490E	probably damaging	Het
Cdh2	C	T	18: 16,762,576 (GRCm39)	G513D	probably benign	Het
Cela1	T	C	15: 100,580,822 (GRCm39)	T145A	probably benign	Het
Cep250	A	G	2: 155,811,227 (GRCm39)	T358A	probably benign	Het
Cfap99	C	T	5: 34,480,735 (GRCm39)	R462C	probably damaging	Het
Cmtm1	A	G	8: 105,036,573 (GRCm39)	S19P	possibly damaging	Het
Crebbp	A	T	16: 3,902,945 (GRCm39)	M2098K	possibly damaging	Het
Csmd3	T	C	15: 47,532,860 (GRCm39)		probably null	Het
Ctsm	C	G	13: 61,687,463 (GRCm39)	V100L	probably benign	Het
Cyp2c67	C	A	19: 39,628,452 (GRCm39)	C164F	probably benign	Het
Cyp2d11	T	C	15: 82,276,688 (GRCm39)	I84V	probably benign	Het
Cyp2j11	T	C	4: 96,195,529 (GRCm39)	D389G	probably damaging	Het
Dctd	A	G	8: 48,564,725 (GRCm39)	D9G	probably benign	Het
Fam221a	C	A	6: 49,355,490 (GRCm39)	F197L	probably damaging	Het
Fbxl4	T	G	4: 22,427,225 (GRCm39)	C489G	possibly damaging	Het
Fmn1	C	T	2: 113,196,037 (GRCm39)	T579M	unknown	Het
Fndc3a	G	A	14: 72,811,820 (GRCm39)	L337F	probably damaging	Het
Frmpd2	A	G	14: 33,265,244 (GRCm39)		probably null	Het
Gdnf	C	T	15: 7,864,243 (GRCm39)	S218L	probably damaging	Het
Gen1	A	G	12: 11,293,266 (GRCm39)	F444L	probably damaging	Het
Gk5	A	T	9: 96,056,756 (GRCm39)	D391V	probably damaging	Het
Gys2	T	C	6: 142,373,136 (GRCm39)	T612A	probably benign	Het
Il17ra	A	G	6: 120,459,063 (GRCm39)	D738G	probably benign	Het
Isx	T	C	8: 75,616,627 (GRCm39)	F85L	probably damaging	Het
Kcnh5	T	C	12: 74,944,633 (GRCm39)	D872G	possibly damaging	Het
Kif26b	T	G	1: 178,506,794 (GRCm39)	V290G	possibly damaging	Het
Ksr2	T	C	5: 117,809,523 (GRCm39)	C429R	probably damaging	Het
Loxhd1	A	C	18: 77,476,095 (GRCm39)	I1121L	possibly damaging	Het
Map2	T	C	1: 66,453,902 (GRCm39)	F931L	probably benign	Het
Mepce	T	C	5: 137,782,935 (GRCm39)	I464V	probably benign	Het
Mpo	G	T	11: 87,692,475 (GRCm39)	V538L	probably benign	Het
Mtarc2	T	A	1: 184,573,509 (GRCm39)	M130L	possibly damaging	Het
Mtrex	T	A	13: 113,009,517 (GRCm39)	K961*	probably null	Het
Myom1	T	C	17: 71,391,290 (GRCm39)	V933A	probably damaging	Het
Nckap1l	T	G	15: 103,386,957 (GRCm39)		probably null	Het
Ncmap	C	A	4: 135,104,375 (GRCm39)	M19I	possibly damaging	Het
Neb	T	A	2: 52,073,848 (GRCm39)	I5920F	probably benign	Het
Nnt	C	T	13: 119,511,212 (GRCm39)	V355I	probably benign	Het
Nr1i2	C	T	16: 38,073,326 (GRCm39)	G217S	probably damaging	Het
Nsd1	A	G	13: 55,458,180 (GRCm39)	R2098G	possibly damaging	Het
Parp4	A	G	14: 56,884,703 (GRCm39)	T1261A	probably benign	Het
Pcgf3	A	T	5: 108,635,723 (GRCm39)	N131I	probably benign	Het
Plcb2	C	T	2: 118,541,302 (GRCm39)	D1012N	probably benign	Het
Plcl2	T	C	17: 50,914,689 (GRCm39)	I566T	probably damaging	Het
Plekha1	G	A	7: 130,510,102 (GRCm39)	A283T	probably damaging	Het
Prag1	A	T	8: 36,567,079 (GRCm39)	M77L	possibly damaging	Het
Rhbdl2	A	T	4: 123,718,711 (GRCm39)	I222L	probably benign	Het
Rnh1	A	C	7: 140,740,617 (GRCm39)	V446G	probably damaging	Het
Sash1	C	T	10: 8,626,805 (GRCm39)	R193H	possibly damaging	Het
Sgf29	G	T	7: 126,271,826 (GRCm39)	V284L	possibly damaging	Het
Slc12a3	G	A	8: 95,057,012 (GRCm39)	G95D	probably benign	Het
Slc17a7	T	C	7: 44,819,714 (GRCm39)	V172A	probably damaging	Het
Spta1	T	C	1: 174,045,510 (GRCm39)	V1556A	probably benign	Het
Tex15	G	A	8: 34,062,921 (GRCm39)	E784K	possibly damaging	Het
Ttn	T	C	2: 76,673,132 (GRCm39)	E11224G	unknown	Het
Wipf1	G	A	2: 73,267,879 (GRCm39)	P173L	possibly damaging	Het
Zdbf2	C	T	1: 63,345,572 (GRCm39)	T1317I	possibly damaging	Het
Zfat	C	T	15: 67,973,355 (GRCm39)	A1147T	probably benign	Het
Zfp217	G	A	2: 169,961,571 (GRCm39)	S252F	possibly damaging	Het
Zhx3	T	G	2: 160,622,695 (GRCm39)	I491L	probably benign	Het
Zranb3	T	C	1: 127,882,732 (GRCm39)	D1061G	probably damaging	Het

Other mutations in Cd72

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00777:Cd72	APN	4	43,448,365 (GRCm39)	missense	possibly damaging	0.79
IGL02861:Cd72	APN	4	43,448,332 (GRCm39)	missense	probably benign	0.33
IGL03208:Cd72	APN	4	43,452,337 (GRCm39)	missense	probably damaging	0.99
grovel	UTSW	4	43,454,515 (GRCm39)	missense	possibly damaging	0.46
scrape	UTSW	4	43,452,628 (GRCm39)	missense	probably damaging	0.96
R0239:Cd72	UTSW	4	43,453,163 (GRCm39)	missense	probably benign	0.06
R0239:Cd72	UTSW	4	43,453,163 (GRCm39)	missense	probably benign	0.06
R3848:Cd72	UTSW	4	43,452,525 (GRCm39)	missense	possibly damaging	0.69
R3971:Cd72	UTSW	4	43,449,491 (GRCm39)	missense	probably damaging	0.99
R4872:Cd72	UTSW	4	43,449,563 (GRCm39)	unclassified	probably benign
R5098:Cd72	UTSW	4	43,452,610 (GRCm39)	missense	probably damaging	0.97
R5471:Cd72	UTSW	4	43,448,345 (GRCm39)	missense	probably benign	0.00
R5890:Cd72	UTSW	4	43,454,475 (GRCm39)	missense	probably damaging	0.98
R7132:Cd72	UTSW	4	43,452,444 (GRCm39)	missense	possibly damaging	0.82
R7478:Cd72	UTSW	4	43,454,515 (GRCm39)	missense	possibly damaging	0.46
R8159:Cd72	UTSW	4	43,450,174 (GRCm39)	missense	probably damaging	0.99
R8442:Cd72	UTSW	4	43,450,109 (GRCm39)	missense	possibly damaging	0.77
R8788:Cd72	UTSW	4	43,450,185 (GRCm39)	missense	probably benign
R8789:Cd72	UTSW	4	43,452,628 (GRCm39)	missense	probably damaging	0.96
R8964:Cd72	UTSW	4	43,450,218 (GRCm39)	missense	probably damaging	0.99
R9331:Cd72	UTSW	4	43,454,320 (GRCm39)	missense	possibly damaging	0.94
R9373:Cd72	UTSW	4	43,450,141 (GRCm39)	missense	possibly damaging	0.90
R9726:Cd72	UTSW	4	43,452,641 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- CAGGCTTGTAGTTGCTGCTC -3'
(R):5'- TTGAAGTCTTAGAGCACCGG -3'

Sequencing Primer
(F):5'- TCAGCGTCCTCGTGAGTC -3'
(R):5'- CTGGAGGAAGTGCACTCAAGTCTC -3'

Posted On

2020-06-30