Mutagenetix > Incidental Mutation

Incidental Mutation 'R8497:Rnft1'

658330

Institutional Source

Beutler Lab

Gene Symbol

Rnft1

Ensembl Gene

ENSMUSG00000020521

Gene Name

ring finger protein, transmembrane 1

Synonyms

0610013E23Rik

MMRRC Submission

067939-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.115) question?

Stock #

R8497 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

86375483-86389833 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 86386132 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 344 (K344*)

Ref Sequence

ENSEMBL: ENSMUSP00000020827 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020827] [ENSMUST00000154617]

AlphaFold

Q9DCN7

Predicted Effect

probably null
Transcript: ENSMUST00000020827
AA Change: K344*

SMART Domains

Protein: ENSMUSP00000020827
Gene: ENSMUSG00000020521
AA Change: K344*

Domain	Start	End	E-Value	Type
low complexity region	92	104	N/A	INTRINSIC
transmembrane domain	125	147	N/A	INTRINSIC
transmembrane domain	168	190	N/A	INTRINSIC
transmembrane domain	210	232	N/A	INTRINSIC
transmembrane domain	244	266	N/A	INTRINSIC
transmembrane domain	281	303	N/A	INTRINSIC
RING	335	372	1.67e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000154617

SMART Domains

Protein: ENSMUSP00000119715
Gene: ENSMUSG00000020516

Domain	Start	End	E-Value	Type
S_TKc	91	352	8.24e-107	SMART
S_TK_X	353	415	9.2e-27	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.8%

Validation Efficiency

100% (51/51)

Allele List at MGI

All alleles(5) : Targeted, other(1) Gene trapped(4)

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A1cf	C	T	19: 31,923,250 (GRCm39)	H509Y	probably benign	Het
Afm	A	T	5: 90,699,202 (GRCm39)		probably null	Het
Apc	G	A	18: 34,446,083 (GRCm39)	C975Y	possibly damaging	Het
Ash1l	G	T	3: 88,914,951 (GRCm39)	M1860I	probably benign	Het
Bdkrb1	C	T	12: 105,570,463 (GRCm39)	Q10*	probably null	Het
Bphl	A	G	13: 34,221,706 (GRCm39)	K21E	possibly damaging	Het
Cadps2	T	C	6: 23,355,918 (GRCm39)	N837D	probably benign	Het
Cat	C	G	2: 103,287,221 (GRCm39)	A470P	probably damaging	Het
Cdc34	G	T	10: 79,520,845 (GRCm39)	D11Y	probably damaging	Het
Cep290	A	G	10: 100,387,320 (GRCm39)	E1936G	probably damaging	Het
Cnot6	A	T	11: 49,566,191 (GRCm39)	N501K	possibly damaging	Het
Cyth3	A	C	5: 143,678,328 (GRCm39)	D44A	probably benign	Het
Dchs1	C	T	7: 105,408,168 (GRCm39)	G1888D	probably damaging	Het
Ffar1	T	G	7: 30,560,334 (GRCm39)	I188L	probably benign	Het
Fhip1b	G	T	7: 105,030,396 (GRCm39)	D820E	probably damaging	Het
Gpr17	A	G	18: 32,080,173 (GRCm39)	Y297H	probably damaging	Het
H2-M10.5	A	C	17: 37,084,729 (GRCm39)	E151A	probably damaging	Het
Hmcn1	C	T	1: 150,455,990 (GRCm39)	R5310K	probably benign	Het
Hmcn2	T	C	2: 31,313,357 (GRCm39)	L3522P	possibly damaging	Het
Hs2st1	T	G	3: 144,140,452 (GRCm39)	T290P	probably damaging	Het
Il5ra	G	A	6: 106,715,066 (GRCm39)	L231F	probably benign	Het
Itgav	T	A	2: 83,615,805 (GRCm39)	C529S	probably damaging	Het
Itprid1	A	T	6: 55,875,179 (GRCm39)	R376S	probably benign	Het
Lrrcc1	A	G	3: 14,605,044 (GRCm39)	D138G	possibly damaging	Het
Mat1a	C	T	14: 40,843,851 (GRCm39)	R357W	probably damaging	Het
Mmp1a	TG	TGG	9: 7,465,083 (GRCm38)		probably null	Het
Mtss2	T	C	8: 111,465,222 (GRCm39)	V492A	possibly damaging	Het
Nalcn	A	G	14: 123,752,771 (GRCm39)	V330A	probably damaging	Het
Neu3	A	T	7: 99,472,342 (GRCm39)		probably null	Het
Nfx1	A	G	4: 40,976,968 (GRCm39)	D214G	possibly damaging	Het
Or2a14	T	C	6: 43,130,818 (GRCm39)	L193P	probably damaging	Het
Or2y17	G	A	11: 49,231,721 (GRCm39)	D121N	probably damaging	Het
Or4f14	T	A	2: 111,742,964 (GRCm39)	I104F	possibly damaging	Het
Or5b104	T	C	19: 13,072,707 (GRCm39)	T102A	probably benign	Het
Pcdhb14	A	T	18: 37,582,349 (GRCm39)	H485L	probably benign	Het
Pdss2	A	C	10: 43,289,521 (GRCm39)	K342T	possibly damaging	Het
Ppargc1a	A	G	5: 51,647,570 (GRCm39)	S254P	probably damaging	Het
Prelid1	A	G	13: 55,470,833 (GRCm39)	D87G	probably damaging	Het
Prkg1	C	A	19: 31,279,709 (GRCm39)	C190F	probably damaging	Het
Psmb5	A	G	14: 54,851,837 (GRCm39)	S116P	possibly damaging	Het
Rassf6	A	G	5: 90,779,391 (GRCm39)	V14A	possibly damaging	Het
Ripk1	T	C	13: 34,211,934 (GRCm39)	S415P	probably damaging	Het
Sacs	G	A	14: 61,429,702 (GRCm39)	R587Q	probably benign	Het
Skp2	A	T	15: 9,127,971 (GRCm39)		probably null	Het
Spata31d1a	T	C	13: 59,848,988 (GRCm39)	K1047E	possibly damaging	Het
Spopfm2	T	A	3: 94,083,119 (GRCm39)	I231F	possibly damaging	Het
Szt2	G	A	4: 118,245,518 (GRCm39)	T1098I	possibly damaging	Het
Tcf20	A	G	15: 82,740,152 (GRCm39)	M433T	probably benign	Het
Tsen54	T	C	11: 115,713,410 (GRCm39)	F438L	probably damaging	Het
Utp23	C	T	15: 51,745,614 (GRCm39)	T144I	probably damaging	Het
Vmn2r105	T	C	17: 20,455,134 (GRCm39)	M1V	probably null	Het
Wdfy4	C	T	14: 32,688,356 (GRCm39)	V2926M	probably damaging	Het
Zfp407	T	C	18: 84,578,021 (GRCm39)	K1031E	probably damaging	Het

Other mutations in Rnft1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00590:Rnft1	APN	11	86,386,740 (GRCm39)	missense	probably damaging	1.00
1mM(1):Rnft1	UTSW	11	86,377,302 (GRCm39)	missense	probably benign	0.34
R1721:Rnft1	UTSW	11	86,377,096 (GRCm39)	missense	probably benign	0.26
R5560:Rnft1	UTSW	11	86,384,022 (GRCm39)	missense	probably benign	0.04
R5640:Rnft1	UTSW	11	86,377,319 (GRCm39)	nonsense	probably null
R5683:Rnft1	UTSW	11	86,382,616 (GRCm39)	missense	probably benign	0.00
R5771:Rnft1	UTSW	11	86,384,032 (GRCm39)	nonsense	probably null
R6471:Rnft1	UTSW	11	86,382,508 (GRCm39)	missense	possibly damaging	0.79
R6919:Rnft1	UTSW	11	86,386,156 (GRCm39)	critical splice donor site	probably null
R7140:Rnft1	UTSW	11	86,382,586 (GRCm39)	missense	probably benign
R7593:Rnft1	UTSW	11	86,384,023 (GRCm39)	nonsense	probably null
R8879:Rnft1	UTSW	11	86,377,516 (GRCm39)	missense	possibly damaging	0.58
R9173:Rnft1	UTSW	11	86,377,001 (GRCm39)	missense	probably benign	0.00
R9468:Rnft1	UTSW	11	86,381,242 (GRCm39)	missense	probably benign	0.27
R9513:Rnft1	UTSW	11	86,377,065 (GRCm39)	missense	possibly damaging	0.80
X0023:Rnft1	UTSW	11	86,382,518 (GRCm39)	missense	probably damaging	0.98
Z1177:Rnft1	UTSW	11	86,377,116 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGTCTGGGCTGCTAAATCAATC -3'
(R):5'- AGAGCCTATTTGCCAACTGC -3'

Sequencing Primer
(F):5'- TGGGCTGCTAAATCAATCTCTAC -3'
(R):5'- AGAGCCTATTTGCCAACTGCTTTAG -3'

Posted On

2021-01-18