Mutagenetix > Incidental Mutation

Incidental Mutation 'R8941:Trim42'

680994

Institutional Source

Beutler Lab

Gene Symbol

Trim42

Ensembl Gene

ENSMUSG00000032451

Gene Name

tripartite motif-containing 42

Synonyms

4930486B16Rik

MMRRC Submission

068781-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R8941 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

97231615-97252011 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 97245100 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 567 (T567A)

Ref Sequence

ENSEMBL: ENSMUSP00000035026 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035026]

AlphaFold

Q9D2H5

Predicted Effect

probably benign
Transcript: ENSMUST00000035026
AA Change: T567A

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000035026
Gene: ENSMUSG00000032451
AA Change: T567A

Domain	Start	End	E-Value	Type
RING	146	191	3.67e-3	SMART
BBOX	233	280	1.42e0	SMART
BBOX	285	326	1.04e-2	SMART
low complexity region	386	399	N/A	INTRINSIC
FN3	603	688	2.44e-5	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (59/59)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, namely a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2010315B03Rik	T	A	9: 124,056,679 (GRCm39)	T103S	probably benign	Het
Aadacl2fm3	A	G	3: 59,784,400 (GRCm39)	Y291C	probably damaging	Het
Aass	A	T	6: 23,075,261 (GRCm39)		probably benign	Het
Adgrb3	A	T	1: 25,133,235 (GRCm39)	C1284S	probably damaging	Het
Adora2a	G	A	10: 75,169,559 (GRCm39)	W341*	probably null	Het
Afg2a	T	A	3: 37,486,142 (GRCm39)	L288H	probably damaging	Het
Arap1	G	A	7: 101,057,324 (GRCm39)	R1355Q	possibly damaging	Het
Asic5	A	T	3: 81,913,915 (GRCm39)		probably benign	Het
Canx	T	C	11: 50,195,270 (GRCm39)	D266G	possibly damaging	Het
Cfap57	A	T	4: 118,426,799 (GRCm39)	Y1080N	probably damaging	Het
Chat	C	T	14: 32,130,963 (GRCm39)	M559I	probably benign	Het
Chd5	G	A	4: 152,463,305 (GRCm39)	S1425N	possibly damaging	Het
Cog8	T	C	8: 107,783,202 (GRCm39)	D29G	probably damaging	Het
Cox15	A	G	19: 43,732,172 (GRCm39)	S215P	probably benign	Het
Cramp1	C	T	17: 25,202,114 (GRCm39)	G456D	probably damaging	Het
Dbt	T	C	3: 116,339,698 (GRCm39)	V362A	probably damaging	Het
Dio1	C	A	4: 107,164,147 (GRCm39)	A57S	probably benign	Het
F5	C	A	1: 164,026,440 (GRCm39)	H1671N	probably benign	Het
Gm6309	A	G	5: 146,107,155 (GRCm39)	Y64H	probably damaging	Het
Hipk1	A	G	3: 103,660,743 (GRCm39)	C731R	probably damaging	Het
Hmgcl	G	A	4: 135,683,015 (GRCm39)	A156T	probably damaging	Het
Il15ra	A	T	2: 11,737,995 (GRCm39)	T210S	possibly damaging	Het
Kat8	T	C	7: 127,524,400 (GRCm39)	L426P	probably damaging	Het
Lrrc39	G	T	3: 116,359,496 (GRCm39)	V14L	probably damaging	Het
Lrrc7	T	C	3: 157,869,593 (GRCm39)	M709V	probably benign	Het
Mdm4	T	C	1: 132,919,671 (GRCm39)	H398R	probably benign	Het
Mroh2b	A	T	15: 4,991,606 (GRCm39)	Q1568L	possibly damaging	Het
Myo18b	G	A	5: 113,022,795 (GRCm39)		probably benign	Het
Nr4a3	C	A	4: 48,051,756 (GRCm39)	P170Q	possibly damaging	Het
Ntrk2	A	G	13: 59,208,109 (GRCm39)	M652V	probably damaging	Het
Or10n7-ps1	A	T	9: 39,597,812 (GRCm39)	*143K	probably null	Het
Or5b95	G	A	19: 12,657,471 (GRCm39)		probably benign	Het
Paxbp1	T	C	16: 90,832,815 (GRCm39)	I325V	possibly damaging	Het
Pcare	T	C	17: 72,059,137 (GRCm39)	H180R	probably benign	Het
Pi4ka	G	T	16: 17,114,807 (GRCm39)		probably benign	Het
Pira13	A	G	7: 3,825,380 (GRCm39)	S421P	probably damaging	Het
Pou6f1	T	A	15: 100,489,742 (GRCm39)	D74V	probably damaging	Het
Prpsap2	C	A	11: 61,627,870 (GRCm39)	R202L	probably damaging	Het
Ptprn	A	T	1: 75,228,407 (GRCm39)	L890Q	probably damaging	Het
Ramp1	C	G	1: 91,134,137 (GRCm39)	P97A	probably benign	Het
Rapgefl1	A	G	11: 98,731,101 (GRCm39)	D179G	probably damaging	Het
Rbp3	T	A	14: 33,678,486 (GRCm39)	F811L	possibly damaging	Het
Rnf213	C	A	11: 119,305,250 (GRCm39)	L494M	probably damaging	Het
Rpl4	A	G	9: 64,082,245 (GRCm39)	N48S	probably benign	Het
Rsbn1l	A	G	5: 21,110,841 (GRCm39)	V499A	probably damaging	Het
Sacs	A	G	14: 61,430,022 (GRCm39)	T691A	probably benign	Het
Sass6	T	C	3: 116,407,709 (GRCm39)	V275A	probably benign	Het
Sdcbp	T	C	4: 6,393,661 (GRCm39)	S259P	probably benign	Het
Sephs2	A	G	7: 126,872,206 (GRCm39)	F296L	probably benign	Het
Slc12a4	C	T	8: 106,673,322 (GRCm39)		probably null	Het
Snrk	G	A	9: 121,989,597 (GRCm39)	V314I	probably benign	Het
Tas1r3	C	T	4: 155,947,600 (GRCm39)		probably null	Het
Tle3	T	A	9: 61,320,195 (GRCm39)	V560E	probably damaging	Het
Trdmt1	A	G	2: 13,526,918 (GRCm39)	Y144H	probably benign	Het
Tsbp1	A	C	17: 34,678,973 (GRCm39)	R228S	possibly damaging	Het
Tuba4a	T	C	1: 75,193,945 (GRCm39)	D74G	probably benign	Het
Ube3c	G	A	5: 29,842,769 (GRCm39)		probably null	Het
Vwa3a	A	G	7: 120,375,311 (GRCm39)	D375G	probably benign	Het
Zfp729b	A	G	13: 67,741,218 (GRCm39)	M349T	possibly damaging	Het

Other mutations in Trim42

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02289:Trim42	APN	9	97,241,286 (GRCm39)	missense	probably damaging	0.97
IGL02987:Trim42	APN	9	97,247,868 (GRCm39)	missense	probably benign	0.28
R0116:Trim42	UTSW	9	97,245,456 (GRCm39)	missense	possibly damaging	0.89
R0791:Trim42	UTSW	9	97,247,732 (GRCm39)	missense	probably damaging	1.00
R1170:Trim42	UTSW	9	97,245,673 (GRCm39)	missense	probably benign	0.04
R1397:Trim42	UTSW	9	97,247,674 (GRCm39)	missense	probably damaging	1.00
R1499:Trim42	UTSW	9	97,248,138 (GRCm39)	missense	possibly damaging	0.95
R1522:Trim42	UTSW	9	97,247,732 (GRCm39)	missense	probably damaging	1.00
R2094:Trim42	UTSW	9	97,248,150 (GRCm39)	missense	probably benign	0.23
R2355:Trim42	UTSW	9	97,241,293 (GRCm39)	missense	probably damaging	1.00
R4621:Trim42	UTSW	9	97,245,201 (GRCm39)	missense	probably benign
R4649:Trim42	UTSW	9	97,244,998 (GRCm39)	missense	probably benign	0.00
R4840:Trim42	UTSW	9	97,244,982 (GRCm39)	missense	probably benign	0.02
R6147:Trim42	UTSW	9	97,245,382 (GRCm39)	missense	probably benign
R7048:Trim42	UTSW	9	97,245,474 (GRCm39)	missense	probably damaging	1.00
R7235:Trim42	UTSW	9	97,251,761 (GRCm39)	missense	probably damaging	0.99
R7276:Trim42	UTSW	9	97,251,625 (GRCm39)	nonsense	probably null
R7390:Trim42	UTSW	9	97,241,182 (GRCm39)	missense	probably damaging	1.00
R7442:Trim42	UTSW	9	97,244,998 (GRCm39)	missense	probably damaging	0.97
R7650:Trim42	UTSW	9	97,245,201 (GRCm39)	missense	probably benign
R7881:Trim42	UTSW	9	97,245,070 (GRCm39)	missense	possibly damaging	0.83
R8060:Trim42	UTSW	9	97,245,532 (GRCm39)	missense	probably damaging	1.00
R8427:Trim42	UTSW	9	97,245,174 (GRCm39)	missense	probably benign	0.25
R8751:Trim42	UTSW	9	97,251,852 (GRCm39)	missense	possibly damaging	0.94
R8850:Trim42	UTSW	9	97,248,047 (GRCm39)	missense	probably damaging	1.00
R8856:Trim42	UTSW	9	97,245,275 (GRCm39)	nonsense	probably null
R9329:Trim42	UTSW	9	97,251,584 (GRCm39)	missense	probably benign	0.37
R9427:Trim42	UTSW	9	97,247,874 (GRCm39)	missense	probably damaging	0.99
R9792:Trim42	UTSW	9	97,245,429 (GRCm39)	missense	probably damaging	1.00
R9793:Trim42	UTSW	9	97,245,429 (GRCm39)	missense	probably damaging	1.00
Z1088:Trim42	UTSW	9	97,251,675 (GRCm39)	missense	probably benign	0.00
Z1177:Trim42	UTSW	9	97,244,959 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CATACCTTGGCAGCTCTTGG -3'
(R):5'- TCTCCAATGCCATCCACGAG -3'

Sequencing Primer
(F):5'- CTTGGCAGCTCTTGGGTACAC -3'
(R):5'- AAAAAGGCTTGCTCCTCTGG -3'

Posted On

2021-08-31