Incidental Mutation 'R9017:Vmn1r196'
ID 686089
Institutional Source Beutler Lab
Gene Symbol Vmn1r196
Ensembl Gene ENSMUSG00000069295
Gene Name vomeronasal 1 receptor 196
Synonyms
MMRRC Submission
Accession Numbers
Essential gene? Probably non essential (E-score: 0.063) question?
Stock # R9017 (G1)
Quality Score 225.009
Status Validated
Chromosome 13
Chromosomal Location 22289920-22298360 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 22294084 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Cysteine to Arginine at position 298 (C298R)
Ref Sequence ENSEMBL: ENSMUSP00000089329 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000091735] [ENSMUST00000226245] [ENSMUST00000227516] [ENSMUST00000228382] [ENSMUST00000228557]
AlphaFold Q5SVD5
Predicted Effect probably benign
Transcript: ENSMUST00000091735
AA Change: C298R

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
SMART Domains Protein: ENSMUSP00000089329
Gene: ENSMUSG00000069295
AA Change: C298R

DomainStartEndE-ValueType
Pfam:V1R 35 297 3.9e-35 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226245
AA Change: C221R

PolyPhen 2 Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)
Predicted Effect probably benign
Transcript: ENSMUST00000227516
AA Change: C113R

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
Predicted Effect probably benign
Transcript: ENSMUST00000228382
AA Change: C298R

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
Predicted Effect probably benign
Transcript: ENSMUST00000228557
AA Change: C298R

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.3%
Validation Efficiency 100% (65/65)
Allele List at MGI
Other mutations in this stock
Total: 65 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgrg7 T C 16: 56,732,848 T629A probably benign Het
Afg3l2 A G 18: 67,409,480 V632A possibly damaging Het
Ahnak G A 19: 9,010,123 E2924K probably damaging Het
Ampd1 A G 3: 103,088,470 Y232C probably benign Het
Ank1 G A 8: 23,116,248 G1219S probably null Het
Atp8b4 A T 2: 126,433,921 N130K probably benign Het
Cdh15 T C 8: 122,857,517 probably null Het
Cep70 T C 9: 99,299,776 I613T possibly damaging Het
Cfap54 C T 10: 92,816,021 V3056I probably benign Het
Chrna2 T C 14: 66,148,833 F143L probably benign Het
Cmya5 C T 13: 93,092,064 R2172H probably benign Het
Col17a1 T C 19: 47,669,459 E424G probably benign Het
Crybg1 T C 10: 44,004,481 E237G probably benign Het
Ctnnd2 G A 15: 30,881,170 C732Y probably damaging Het
Dcaf12 T C 4: 41,299,411 N264S probably benign Het
Dennd4c A G 4: 86,825,112 S1064G probably benign Het
Dsc2 A T 18: 20,043,911 Y360N probably damaging Het
E2f3 T G 13: 29,913,495 D295A probably damaging Het
Eef2 T C 10: 81,179,653 L336P possibly damaging Het
Fanca A G 8: 123,308,568 S213P possibly damaging Het
Fpgt A T 3: 155,087,266 S375T probably benign Het
Gad1 G A 2: 70,585,862 V222I probably benign Het
Gm5930 A T 14: 44,331,401 Y255N possibly damaging Het
Gpr55 T C 1: 85,940,902 N319S probably benign Het
Grik2 T A 10: 49,113,459 I825F possibly damaging Het
Hcn4 T C 9: 58,824,199 S230P unknown Het
Kansl3 T C 1: 36,354,780 I222V probably benign Het
Kif20b T C 19: 34,949,803 S822P probably benign Het
Kremen2 T A 17: 23,745,763 probably benign Het
Krt71 G T 15: 101,742,665 R128S possibly damaging Het
Lrp4 A T 2: 91,494,052 N1244I possibly damaging Het
Lrrc66 T C 5: 73,607,901 S600G possibly damaging Het
Mrc2 T A 11: 105,325,885 C167S probably damaging Het
Mrps17 T C 5: 129,716,793 V17A probably damaging Het
Muc20 A T 16: 32,794,470 L179Q unknown Het
Olfr1209 G T 2: 88,909,607 T262K probably damaging Het
Olfr1340 T A 4: 118,726,368 F40L probably benign Het
Olfr309 A T 7: 86,306,749 Y121* probably null Het
Otop2 T C 11: 115,323,605 F63L probably benign Het
Pde3b C T 7: 114,416,460 Q304* probably null Het
Pex19 GTCTCTTGTCTCCGAAGGTGCTCTTGATGATTTCTCTTGTCTCCGAAGGTGCTCTTGATGATTTC GTCTCTTGTCTCCGAAGGTGCTCTTGATGATTTC 1: 172,128,583 probably null Het
Plekhg4 A G 8: 105,378,700 E599G possibly damaging Het
Ppargc1a C A 5: 51,472,909 R622L unknown Het
Ppip5k2 A G 1: 97,727,414 L879P probably damaging Het
Prepl C T 17: 85,068,938 V563M possibly damaging Het
Prom1 G T 5: 44,047,528 D201E probably damaging Het
Psmd1 T A 1: 86,126,509 D723E probably damaging Het
Sall2 A T 14: 52,313,262 N825K possibly damaging Het
Sds A T 5: 120,480,590 M70L probably benign Het
Sema4c C T 1: 36,552,998 R256H probably damaging Het
Sik1 T C 17: 31,851,571 Y100C probably damaging Het
Slc13a5 T A 11: 72,247,762 I452F probably damaging Het
Slc25a24 A G 3: 109,155,079 I162V possibly damaging Het
Sorbs2 T G 8: 45,795,737 V675G probably benign Het
Tenm3 T A 8: 48,254,633 N1710I probably damaging Het
Tmem115 T A 9: 107,534,681 M68K probably benign Het
Tmem132d T C 5: 127,789,872 I655V probably benign Het
Tmem132d T C 5: 128,269,252 I69V probably benign Het
Tnfrsf11a G A 1: 105,827,129 A309T possibly damaging Het
Trim9 A G 12: 70,267,239 M544T probably benign Het
Ttll3 G A 6: 113,412,889 R745H probably benign Het
Ttn G T 2: 76,907,587 L4249I unknown Het
Unc79 G A 12: 103,108,615 probably null Het
Vmn1r216 A G 13: 23,099,911 I255V probably benign Het
Zfp853 A G 5: 143,288,488 L474P unknown Het
Other mutations in Vmn1r196
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01941:Vmn1r196 APN 13 22293699 nonsense probably null
R0415:Vmn1r196 UTSW 13 22293836 missense probably damaging 1.00
R0502:Vmn1r196 UTSW 13 22293387 missense probably benign 0.01
R0503:Vmn1r196 UTSW 13 22293387 missense probably benign 0.01
R2306:Vmn1r196 UTSW 13 22293303 missense probably benign 0.08
R4463:Vmn1r196 UTSW 13 22293683 missense probably benign
R6335:Vmn1r196 UTSW 13 22293717 missense probably benign 0.18
R7664:Vmn1r196 UTSW 13 22293762 missense probably damaging 1.00
R8062:Vmn1r196 UTSW 13 22293270 missense probably damaging 1.00
R9434:Vmn1r196 UTSW 13 22293620 nonsense probably null
R9583:Vmn1r196 UTSW 13 22293750 missense probably damaging 0.96
S24628:Vmn1r196 UTSW 13 22293836 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CAAAGTGTCCTCCTTCTGATGC -3'
(R):5'- AATGAGAAGCTCCCCTGGTC -3'

Sequencing Primer
(F):5'- GTCCTCCTTCTGATGCTCTGTTTTG -3'
(R):5'- CCCAGGATCTTTGTGTCAAATG -3'
Posted On 2021-10-11