Mutagenetix > Incidental Mutation

Incidental Mutation 'R9273:Dcn'

703105

Institutional Source

Beutler Lab

Gene Symbol

Dcn

Ensembl Gene

ENSMUSG00000019929

Gene Name

decorin

Synonyms

DC, SLRR1B

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9273 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

97315471-97354005 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 97343637 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 199 (Y199C)

Ref Sequence

ENSEMBL: ENSMUSP00000100924 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000105287] [ENSMUST00000163448]

AlphaFold

P28654

Predicted Effect

probably damaging
Transcript: ENSMUST00000105287
AA Change: Y199C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000100924
Gene: ENSMUSG00000019929
AA Change: Y199C

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
LRRNT	48	80	3.86e-11	SMART
LRR	79	98	2.54e1	SMART
LRR	99	122	1.14e0	SMART
LRR_TYP	123	146	2.91e-2	SMART
LRR	147	167	1.67e2	SMART
LRR	168	193	1.29e2	SMART
LRR	194	217	5.27e1	SMART
LRR	239	262	6.05e0	SMART
LRR	263	286	1.01e-1	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000163448
AA Change: Y199C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000131431
Gene: ENSMUSG00000019929
AA Change: Y199C

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
LRRNT	48	80	3.86e-11	SMART
LRR	79	98	2.54e1	SMART
LRR	99	122	1.14e0	SMART
LRR_TYP	123	146	2.91e-2	SMART
LRR	147	167	1.67e2	SMART
LRR	168	193	1.29e2	SMART
LRR	194	217	5.27e1	SMART
LRR	239	262	6.05e0	SMART
LRR	263	286	1.01e-1	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

100% (70/70)

MGI Phenotype

FUNCTION: This gene encodes a member of the small leucine-rich proteoglycan (SLRP) family of proteins. The encoded preproprotein is proteolytically processed to generate a mature protein product, which is secreted into the extracellular space to regulate collagen fibril assembly. Homozygous knockout mice for this gene exhibit enhanced tumorigenesis in a liver cancer model, and defects in collagen fibrils, leading to weakened skin and tendons. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2015]
PHENOTYPE: Mutant mice have fragile skin and exhibit abnormal collagen morphology in skin and tendons, supporting this gene's role in regulating collagen fiber formation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcd2	T	C	15: 91,033,232 (GRCm39)	D728G	probably benign	Het
Adig	A	T	2: 158,347,727 (GRCm39)	D48V	probably damaging	Het
Adig	A	C	2: 158,349,890 (GRCm39)	*57S	probably null	Het
Amigo3	A	G	9: 107,932,020 (GRCm39)	D481G	probably damaging	Het
Atf6b	T	A	17: 34,872,968 (GRCm39)	M628K	probably damaging	Het
Atoh8	A	G	6: 72,212,129 (GRCm39)	L7P	probably damaging	Het
Bcl9	A	G	3: 97,115,959 (GRCm39)	S912P	probably damaging	Het
Card9	T	A	2: 26,247,310 (GRCm39)	I280F	probably damaging	Het
Ccr9	A	G	9: 123,609,085 (GRCm39)	T256A	probably benign	Het
Cd300lg	T	C	11: 101,939,590 (GRCm39)	I306T	probably damaging	Het
Cfap65	T	A	1: 74,960,769 (GRCm39)	M734L	probably benign	Het
Cobll1	A	G	2: 64,929,356 (GRCm39)	S657P	probably damaging	Het
Comp	A	G	8: 70,831,285 (GRCm39)	N384S	probably damaging	Het
Cps1	T	A	1: 67,191,445 (GRCm39)	V209D	possibly damaging	Het
Cwc22	A	T	2: 77,759,803 (GRCm39)	D81E	possibly damaging	Het
D630045J12Rik	G	A	6: 38,167,512 (GRCm39)	P1030L	possibly damaging	Het
Exosc3	A	T	4: 45,316,969 (GRCm39)	I228N	probably damaging	Het
Fbxo10	T	C	4: 45,062,178 (GRCm39)	H116R	probably benign	Het
Fbxo21	T	A	5: 118,146,108 (GRCm39)	I577N	probably damaging	Het
Flnc	A	T	6: 29,447,815 (GRCm39)	Q1206L	probably benign	Het
Fubp3	T	C	2: 31,503,056 (GRCm39)	F480L	probably benign	Het
Fzd5	T	C	1: 64,775,110 (GRCm39)	N217S	possibly damaging	Het
Garem1	G	A	18: 21,281,274 (GRCm39)	R361C	probably damaging	Het
Gcg	T	C	2: 62,306,133 (GRCm39)	M155V	probably null	Het
Gm7298	G	A	6: 121,756,604 (GRCm39)		probably benign	Het
Gpr160	T	A	3: 30,950,038 (GRCm39)	L37I	probably benign	Het
Grik1	G	A	16: 87,848,379 (GRCm39)	H130Y		Het
Hydin	T	A	8: 111,233,580 (GRCm39)	I1806N	probably damaging	Het
Isl1	A	T	13: 116,444,902 (GRCm39)	C42*	probably null	Het
Itpr2	T	C	6: 146,226,529 (GRCm39)	D1405G	probably damaging	Het
Kat6b	A	G	14: 21,711,551 (GRCm39)	N682D	probably benign	Het
Kcnh6	C	G	11: 105,924,860 (GRCm39)	H941Q	possibly damaging	Het
Kprp	A	C	3: 92,733,000 (GRCm39)	C17G	probably damaging	Het
Lsm14a	T	C	7: 34,088,225 (GRCm39)		probably benign	Het
Mrgpra2a	G	T	7: 47,076,307 (GRCm39)	T317K	probably benign	Het
Myh11	A	G	16: 14,054,283 (GRCm39)	V360A		Het
Nicn1	C	T	9: 108,171,708 (GRCm39)	R163C	possibly damaging	Het
Oaf	G	A	9: 43,133,966 (GRCm39)	P252S	probably benign	Het
Obox2	T	G	7: 15,131,290 (GRCm39)	V132G	unknown	Het
Or51v8	T	A	7: 103,319,633 (GRCm39)	T202S	probably benign	Het
Or52b1	A	G	7: 104,978,646 (GRCm39)	L251P	probably damaging	Het
Or5b109	C	T	19: 13,212,268 (GRCm39)	S218L	probably damaging	Het
Or5b12	T	C	19: 12,897,446 (GRCm39)	T76A	possibly damaging	Het
Pld2	T	A	11: 70,448,234 (GRCm39)	S894T	probably benign	Het
Plxna1	G	T	6: 89,296,364 (GRCm39)	S1893R	possibly damaging	Het
Prkd1	T	C	12: 50,472,232 (GRCm39)	E227G	possibly damaging	Het
Prox1	T	C	1: 189,893,242 (GRCm39)	N401S	possibly damaging	Het
Prune2	T	C	19: 17,095,690 (GRCm39)	V398A	possibly damaging	Het
Rasgef1a	A	G	6: 118,063,223 (GRCm39)	N285D	probably benign	Het
Rbbp5	A	G	1: 132,420,304 (GRCm39)	K179R	probably benign	Het
Rp9	G	A	9: 22,379,573 (GRCm39)		probably benign	Het
Slc15a2	A	G	16: 36,574,090 (GRCm39)	F588L	probably benign	Het
Sptan1	T	A	2: 29,880,977 (GRCm39)	D415E	possibly damaging	Het
Syne1	T	C	10: 4,990,901 (GRCm39)	K593E	probably benign	Het
Tab1	A	G	15: 80,041,904 (GRCm39)	T341A	probably benign	Het
Tmc4	T	C	7: 3,670,552 (GRCm39)	E513G	probably damaging	Het
Tmem131l	A	C	3: 83,848,244 (GRCm39)	V302G	probably damaging	Het
Tnip1	G	A	11: 54,807,783 (GRCm39)	H553Y	possibly damaging	Het
Tns2	C	T	15: 102,021,478 (GRCm39)	P1048S	probably damaging	Het
Twsg1	C	T	17: 66,233,306 (GRCm39)	V215I	probably damaging	Het
Txnl1	G	A	18: 63,825,325 (GRCm39)		probably benign	Het
Unc13c	A	G	9: 73,839,862 (GRCm39)	Y330H	possibly damaging	Het
Utrn	A	T	10: 12,509,707 (GRCm39)	W2422R	probably damaging	Het
Vmn2r112	T	A	17: 22,837,721 (GRCm39)	D727E	probably damaging	Het
Vmn2r59	G	T	7: 41,695,286 (GRCm39)	C375*	probably null	Het
Vopp1	G	T	6: 57,731,575 (GRCm39)	Q139K	possibly damaging	Het
Vwa5b1	T	C	4: 138,316,005 (GRCm39)	D579G	probably damaging	Het
Wdr6	A	G	9: 108,450,691 (GRCm39)	Y971H	probably benign	Het
Zfp354c	A	G	11: 50,706,059 (GRCm39)	F339L	probably damaging	Het
Zfyve26	A	G	12: 79,317,610 (GRCm39)		probably null	Het

Other mutations in Dcn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01519:Dcn	APN	10	97,319,385 (GRCm39)	missense	probably damaging	1.00
IGL01776:Dcn	APN	10	97,330,938 (GRCm39)	missense	possibly damaging	0.88
IGL02608:Dcn	APN	10	97,319,319 (GRCm39)	missense	probably damaging	0.99
IGL02990:Dcn	APN	10	97,345,835 (GRCm39)	missense	probably benign	0.00
IGL03181:Dcn	APN	10	97,319,314 (GRCm39)	missense	probably damaging	0.98
IGL03268:Dcn	APN	10	97,319,240 (GRCm39)	missense	probably benign
PIT4791001:Dcn	UTSW	10	97,343,604 (GRCm39)	missense	probably benign
R0091:Dcn	UTSW	10	97,342,551 (GRCm39)	missense	probably benign	0.00
R0267:Dcn	UTSW	10	97,342,345 (GRCm39)	splice site	probably benign
R1759:Dcn	UTSW	10	97,349,517 (GRCm39)	missense	probably benign	0.01
R1845:Dcn	UTSW	10	97,342,536 (GRCm39)	missense	probably benign	0.00
R5322:Dcn	UTSW	10	97,353,464 (GRCm39)	missense	probably benign	0.03
R6613:Dcn	UTSW	10	97,330,902 (GRCm39)	missense	probably benign	0.03
R6650:Dcn	UTSW	10	97,343,605 (GRCm39)	missense	probably benign	0.00
R7392:Dcn	UTSW	10	97,345,860 (GRCm39)	missense	probably damaging	0.98
R7596:Dcn	UTSW	10	97,345,871 (GRCm39)	missense	probably damaging	1.00
R7626:Dcn	UTSW	10	97,319,340 (GRCm39)	missense	possibly damaging	0.75
R7874:Dcn	UTSW	10	97,346,056 (GRCm39)	splice site	probably null
R8017:Dcn	UTSW	10	97,319,397 (GRCm39)	missense	probably damaging	1.00
R8049:Dcn	UTSW	10	97,349,479 (GRCm39)	missense	probably damaging	1.00
R8316:Dcn	UTSW	10	97,330,939 (GRCm39)	missense	probably damaging	1.00
R9254:Dcn	UTSW	10	97,343,643 (GRCm39)	missense	probably damaging	1.00
R9379:Dcn	UTSW	10	97,343,643 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGCTTCTCTGAAAGCATCTGG -3'
(R):5'- CGTCTAGAAACACAATGCCCGG -3'

Sequencing Primer
(F):5'- GCATCTGGTTTCTCAATCAAGAAG -3'
(R):5'- TGCCCGGAATTGAGAGTTCAC -3'

Posted On

2022-03-25