Incidental Mutation 'R1614:Arl9'
ID176991
Institutional Source Beutler Lab
Gene Symbol Arl9
Ensembl Gene ENSMUSG00000063820
Gene NameADP-ribosylation factor-like 9
Synonyms
MMRRC Submission 039651-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R1614 (G1)
Quality Score192
Status Validated
Chromosome5
Chromosomal Location77004055-77010606 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 77010565 bp
ZygosityHeterozygous
Amino Acid Change Threonine to Alanine at position 165 (T165A)
Ref Sequence ENSEMBL: ENSMUSP00000122846 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000071199] [ENSMUST00000134197]
Predicted Effect probably benign
Transcript: ENSMUST00000071199
SMART Domains Protein: ENSMUSP00000071188
Gene: ENSMUSG00000063820

DomainStartEndE-ValueType
Pfam:Arf 5 132 1.1e-30 PFAM
Pfam:SRPRB 16 132 3.5e-10 PFAM
Pfam:Roc 20 128 2.4e-11 PFAM
Pfam:Ras 20 130 7.4e-9 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000129353
Predicted Effect probably benign
Transcript: ENSMUST00000134197
AA Change: T165A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000122846
Gene: ENSMUSG00000063820
AA Change: T165A

DomainStartEndE-ValueType
Pfam:SRPRB 1 166 3.1e-13 PFAM
Pfam:Arf 2 162 1e-38 PFAM
Pfam:Roc 5 115 1.1e-12 PFAM
Pfam:Gtr1_RagA 5 141 8.5e-8 PFAM
Pfam:Ras 5 160 4.4e-12 PFAM
Meta Mutation Damage Score 0.0612 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.4%
  • 20x: 89.4%
Validation Efficiency 100% (53/53)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] ARL9 is a member of the small GTPase protein family with a high degree of similarity to ARF (MIM 103180) proteins of the RAS superfamily.[supplied by OMIM, Nov 2008]
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700125H20Rik T G 11: 85,172,864 S28A possibly damaging Het
Atpaf1 A T 4: 115,796,757 K201N possibly damaging Het
Cacna1b G T 2: 24,690,807 Q676K possibly damaging Het
Ccdc88c A T 12: 100,912,984 H1959Q probably benign Het
Cep162 T C 9: 87,212,932 D808G probably damaging Het
Chtf18 A G 17: 25,727,090 L42P probably benign Het
Cox7c A G 13: 86,045,785 F40L probably benign Het
Dock7 C T 4: 99,061,280 V442I probably benign Het
Dst T C 1: 34,275,263 F4198S probably damaging Het
Fam13a T A 6: 58,940,184 D569V probably damaging Het
Gm6741 T A 17: 91,236,996 H62Q probably benign Het
Gnptab A G 10: 88,414,589 T172A probably benign Het
Greb1 A G 12: 16,701,171 S1013P probably damaging Het
Insl5 A T 4: 103,026,649 L25* probably null Het
Ipo13 A G 4: 117,904,618 S462P probably benign Het
Itgb1 G A 8: 128,720,065 C401Y probably damaging Het
Kcnh7 G T 2: 62,850,604 A213E probably benign Het
Kcnv1 G A 15: 45,114,444 T66M probably damaging Het
Mesp2 T C 7: 79,811,619 S231P probably benign Het
Nabp1 T C 1: 51,471,352 N164D possibly damaging Het
Nop53 A G 7: 15,945,965 V30A probably benign Het
Olfr1246 T A 2: 89,590,696 I140L possibly damaging Het
Olfr1278 T A 2: 111,293,066 V266E probably damaging Het
Olfr1318 T A 2: 112,156,517 C189S probably damaging Het
Olfr346 T G 2: 36,688,309 Y102* probably null Het
Pcsk5 G A 19: 17,515,256 R918C probably damaging Het
Pecam1 T C 11: 106,681,079 D554G probably benign Het
Polr2a T C 11: 69,743,373 I744V possibly damaging Het
Pop1 C A 15: 34,530,210 A918D possibly damaging Het
Ppp2r5e C G 12: 75,469,567 A239P probably damaging Het
Prmt3 A T 7: 49,826,719 I359F possibly damaging Het
Proz G A 8: 13,066,904 C152Y probably damaging Het
Ptgfr A C 3: 151,801,779 Y316D probably benign Het
Ralgapa2 G T 2: 146,388,612 S1011Y probably damaging Het
Rnf43 C T 11: 87,731,659 R529* probably null Het
Slc17a6 G A 7: 51,646,277 probably benign Het
Slc25a19 A T 11: 115,616,623 C224* probably null Het
Smarcd3 A G 5: 24,594,876 S299P possibly damaging Het
Stard9 T C 2: 120,697,675 F1471S possibly damaging Het
Strada A C 11: 106,168,319 V211G probably damaging Het
Tom1l1 T C 11: 90,683,254 E68G probably damaging Het
Vmn2r27 T G 6: 124,223,934 I355L probably benign Het
Vmn2r68 A T 7: 85,221,738 M779K possibly damaging Het
Zbtb18 T C 1: 177,447,170 L23P probably damaging Het
Zfp112 G T 7: 24,126,599 C664F probably damaging Het
Zfp955a A T 17: 33,242,332 N275K possibly damaging Het
Other mutations in Arl9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00538:Arl9 APN 5 77004056 start codon destroyed probably null 0.02
IGL01327:Arl9 APN 5 77006554 missense possibly damaging 0.63
IGL01557:Arl9 APN 5 77004101 critical splice donor site probably null
IGL03068:Arl9 APN 5 77007378 missense possibly damaging 0.60
R0038:Arl9 UTSW 5 77006475 missense probably benign 0.00
R0195:Arl9 UTSW 5 77006494 missense probably damaging 1.00
R0322:Arl9 UTSW 5 77007190 intron probably benign
R0540:Arl9 UTSW 5 77007271 missense possibly damaging 0.91
R1735:Arl9 UTSW 5 77006626 missense probably damaging 1.00
R3547:Arl9 UTSW 5 77010479 missense probably benign 0.01
R4296:Arl9 UTSW 5 77006549 missense probably damaging 1.00
R5520:Arl9 UTSW 5 77006593 missense probably damaging 1.00
R5731:Arl9 UTSW 5 77006527 missense possibly damaging 0.95
R6018:Arl9 UTSW 5 77007406 missense probably damaging 1.00
R6547:Arl9 UTSW 5 77010410 critical splice acceptor site probably null
R7203:Arl9 UTSW 5 77007271 missense possibly damaging 0.91
R7468:Arl9 UTSW 5 77010429 nonsense probably null
Predicted Primers PCR Primer
(F):5'- ATCCAACACTTGGAAGGCTCCTTG -3'
(R):5'- GTGTTCTCCGTATAGACGCTCTGC -3'

Sequencing Primer
(F):5'- TCCTTGAAAAAACAaaacaaacaaac -3'
(R):5'- GCTCTGCATTGCGAGAATAAC -3'
Posted On2014-04-24