Mutagenetix > Incidental Mutation

Incidental Mutation 'R1829:Nynrin'

207155

Institutional Source

Beutler Lab

Gene Symbol

Nynrin

Ensembl Gene

ENSMUSG00000075592

Gene Name

NYN domain and retroviral integrase containing

Synonyms

MMRRC Submission

039856-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1829 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

56091572-56112193 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 56110404 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 1837 (D1837G)

Ref Sequence

ENSEMBL: ENSMUSP00000129557 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000100529] [ENSMUST00000168479]

AlphaFold

Q5DTZ0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000100529
AA Change: D1837G

PolyPhen 2 Score 0.505 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000098098
Gene: ENSMUSG00000075592
AA Change: D1837G

Domain	Start	End	E-Value	Type
low complexity region	581	606	N/A	INTRINSIC
Pfam:RNase_Zc3h12a	739	890	1.6e-54	PFAM
low complexity region	938	952	N/A	INTRINSIC
low complexity region	1212	1228	N/A	INTRINSIC
low complexity region	1390	1397	N/A	INTRINSIC
PDB:3S3O\|B	1478	1706	6e-8	PDB
SCOP:d1cxqa_	1552	1646	2e-12	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000168479
AA Change: D1837G

PolyPhen 2 Score 0.505 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000129557
Gene: ENSMUSG00000075592
AA Change: D1837G

Domain	Start	End	E-Value	Type
low complexity region	581	606	N/A	INTRINSIC
Pfam:RNase_Zc3h12a	739	890	5.5e-54	PFAM
low complexity region	938	952	N/A	INTRINSIC
low complexity region	1212	1228	N/A	INTRINSIC
low complexity region	1390	1397	N/A	INTRINSIC
PDB:3S3O\|B	1478	1706	6e-8	PDB
SCOP:d1cxqa_	1552	1646	2e-12	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181218

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.1%
20x: 91.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 114 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aars1	A	T	8: 111,769,338 (GRCm39)	D287V	probably damaging	Het
Abca12	A	G	1: 71,334,188 (GRCm39)	C1105R	probably benign	Het
Abca8b	T	A	11: 109,833,167 (GRCm39)	N1178Y	probably damaging	Het
Abhd12	A	G	2: 150,685,318 (GRCm39)	L189P	probably damaging	Het
Acap2	G	T	16: 30,929,752 (GRCm39)	N435K	probably damaging	Het
Adam6b	G	T	12: 113,453,545 (GRCm39)	G121C	probably damaging	Het
Adgrb1	C	A	15: 74,452,435 (GRCm39)	C200*	probably null	Het
Agbl5	T	C	5: 31,060,408 (GRCm39)	S730P	possibly damaging	Het
Ahsg	G	A	16: 22,711,078 (GRCm39)		probably benign	Het
Aldh9a1	A	T	1: 167,189,423 (GRCm39)	K390N	probably benign	Het
Alpk2	T	A	18: 65,427,165 (GRCm39)	H1857L	possibly damaging	Het
Apip	T	A	2: 102,919,007 (GRCm39)	N102K	probably benign	Het
Asxl2	T	C	12: 3,507,125 (GRCm39)	S106P	probably damaging	Het
Atp2b2	G	T	6: 113,750,329 (GRCm39)	R677S	probably damaging	Het
Barhl1	A	C	2: 28,799,857 (GRCm39)	M256R	probably damaging	Het
Cacnb2	A	T	2: 14,990,775 (GRCm39)	Q619L	possibly damaging	Het
Ccdc137	C	T	11: 120,349,038 (GRCm39)	P23L	probably benign	Het
Cdh11	A	T	8: 103,361,273 (GRCm39)	N688K	possibly damaging	Het
Cdh18	C	T	15: 23,173,938 (GRCm39)	P51S	probably damaging	Het
Cdin1	G	T	2: 115,473,173 (GRCm39)	R101L	possibly damaging	Het
Cfhr1	A	T	1: 139,481,338 (GRCm39)	Y181N	probably damaging	Het
Chmp3	A	G	6: 71,537,923 (GRCm39)	D50G	probably benign	Het
Crem	T	C	18: 3,295,037 (GRCm39)		probably null	Het
Cyb561a3	G	A	19: 10,559,757 (GRCm39)	W27*	probably null	Het
Cyp2d12	C	A	15: 82,442,257 (GRCm39)	N297K	possibly damaging	Het
Dclk2	C	T	3: 86,712,946 (GRCm39)	R503Q	possibly damaging	Het
Dnah12	T	A	14: 26,522,032 (GRCm39)	N1948K	probably damaging	Het
Dnah12	T	C	14: 26,494,980 (GRCm39)	L1346P	probably damaging	Het
Dsp	T	G	13: 38,377,171 (GRCm39)	L1652R	probably damaging	Het
Dstyk	G	A	1: 132,377,333 (GRCm39)	S66N	probably benign	Het
Ehhadh	T	C	16: 21,580,928 (GRCm39)	E688G	probably damaging	Het
Emsy	G	T	7: 98,251,937 (GRCm39)	H688N	possibly damaging	Het
Emsy	T	A	7: 98,251,936 (GRCm39)	H688L	possibly damaging	Het
Endod1	A	G	9: 14,268,222 (GRCm39)	L421P	probably damaging	Het
Fam222b	C	T	11: 78,045,861 (GRCm39)	P346L	probably damaging	Het
Fam3c	G	A	6: 22,309,436 (GRCm39)	R182W	probably damaging	Het
Gck	T	C	11: 5,860,984 (GRCm39)	D29G	probably damaging	Het
Gm10320	C	A	13: 98,626,207 (GRCm39)	R59L	probably damaging	Het
Gm21798	C	T	15: 64,689,675 (GRCm39)		probably benign	Het
Gm9376	A	G	14: 118,504,957 (GRCm39)	T130A	possibly damaging	Het
Gpr153	T	A	4: 152,366,849 (GRCm39)	I334N	possibly damaging	Het
Greb1l	T	C	18: 10,509,314 (GRCm39)	L542P	probably damaging	Het
H2-T15	G	T	17: 36,368,896 (GRCm39)	F61L	probably damaging	Het
Hacl1	T	C	14: 31,362,491 (GRCm39)	E52G	probably benign	Het
Ice2	A	G	9: 69,314,635 (GRCm39)	Y128C	probably damaging	Het
Ikzf2	T	A	1: 69,581,446 (GRCm39)	I121L	probably benign	Het
Ipcef1	C	T	10: 6,869,900 (GRCm39)	A167T	probably benign	Het
Jakmip2	T	A	18: 43,715,145 (GRCm39)	D127V	possibly damaging	Het
Jph4	T	C	14: 55,352,368 (GRCm39)	T122A	probably damaging	Het
Kcns2	A	G	15: 34,838,949 (GRCm39)	E104G	probably damaging	Het
Lars2	A	C	9: 123,260,982 (GRCm39)	R384S	probably benign	Het
Lsmem1	T	A	12: 40,235,407 (GRCm39)	H3L	possibly damaging	Het
Lsmem1	G	T	12: 40,235,408 (GRCm39)	H3N	possibly damaging	Het
Ly6g2	T	G	15: 75,088,605 (GRCm39)		probably null	Het
Mfhas1	A	C	8: 36,057,222 (GRCm39)	S566R	probably benign	Het
Mfhas1	C	G	8: 36,057,402 (GRCm39)	R626G	probably benign	Het
Mgam	A	G	6: 40,643,826 (GRCm39)	T585A	probably damaging	Het
Mmp25	T	C	17: 23,858,997 (GRCm39)	K185E	probably benign	Het
Mtch1	T	C	17: 29,557,750 (GRCm39)	I243V	probably damaging	Het
Mtcp1	A	T	X: 74,455,271 (GRCm39)	Y25*	probably null	Het
Mybl2	A	G	2: 162,901,503 (GRCm39)	T35A	probably benign	Het
Myh11	T	C	16: 14,041,744 (GRCm39)	E736G	probably damaging	Het
Myh2	T	C	11: 67,067,385 (GRCm39)	I224T	probably damaging	Het
Mymx	T	C	17: 45,912,759 (GRCm39)		probably benign	Het
Nek10	A	G	14: 14,863,454 (GRCm38)		probably null	Het
Nsd1	A	T	13: 55,394,182 (GRCm39)	K697N	probably damaging	Het
Or14j4	G	A	17: 37,921,168 (GRCm39)	T158I	probably benign	Het
Or2ag2b	A	G	7: 106,418,214 (GRCm39)	H308R	probably benign	Het
Or52s1	A	T	7: 102,861,093 (GRCm39)	T9S	probably benign	Het
Or5p81	T	A	7: 108,266,851 (GRCm39)	I76N	probably benign	Het
Or6k4	T	A	1: 173,964,760 (GRCm39)	I150N	probably benign	Het
Pgap6	T	C	17: 26,341,194 (GRCm39)	Y766H	probably damaging	Het
Phf19	T	C	2: 34,801,781 (GRCm39)	T10A	probably benign	Het
Pkd1	A	T	17: 24,784,558 (GRCm39)	H368L	probably benign	Het
Plscr2	A	G	9: 92,172,808 (GRCm39)	R156G	probably damaging	Het
Ppp1r42	G	A	1: 10,070,311 (GRCm39)	R61C	probably benign	Het
Pptc7	T	G	5: 122,451,679 (GRCm39)	V45G	probably damaging	Het
Prlhr	G	A	19: 60,455,867 (GRCm39)	T233I	probably damaging	Het
Prr23a4	T	A	9: 98,785,446 (GRCm39)	I37N	possibly damaging	Het
Reps1	C	T	10: 17,983,462 (GRCm39)	T435I	probably damaging	Het
Ret	T	A	6: 118,130,912 (GRCm39)	T1084S	probably damaging	Het
Rgl2	T	A	17: 34,152,595 (GRCm39)	M402K	probably benign	Het
Rp2	A	G	X: 20,243,154 (GRCm39)	K43R	probably benign	Het
Rundc3b	A	T	5: 8,629,117 (GRCm39)	W95R	probably damaging	Het
Samd9l	T	C	6: 3,375,107 (GRCm39)	D718G	possibly damaging	Het
Scnn1b	G	A	7: 121,502,068 (GRCm39)	R242H	probably benign	Het
Smad4	G	T	18: 73,774,965 (GRCm39)	Q445K	probably benign	Het
Smchd1	G	T	17: 71,677,332 (GRCm39)	P1486T	probably damaging	Het
Snx25	G	T	8: 46,488,669 (GRCm39)	N895K	possibly damaging	Het
Sox2	A	G	3: 34,704,890 (GRCm39)	D109G	probably damaging	Het
Stfa2	A	T	16: 36,225,564 (GRCm39)	N38K	probably damaging	Het
Stfa2	C	A	16: 36,225,573 (GRCm39)	E35D	possibly damaging	Het
Stfa3	A	G	16: 36,271,023 (GRCm39)	L87P	probably damaging	Het
Strbp	T	C	2: 37,530,921 (GRCm39)	D111G	possibly damaging	Het
Supt20	C	A	3: 54,635,079 (GRCm39)		probably benign	Het
Svep1	A	G	4: 58,096,310 (GRCm39)	Y1437H	possibly damaging	Het
Tbx4	T	A	11: 85,802,746 (GRCm39)		probably null	Het
Tmem117	A	T	15: 94,992,432 (GRCm39)	N364I	probably damaging	Het
Trat1	T	C	16: 48,581,742 (GRCm39)	E45G	probably damaging	Het
Trpc2	G	A	7: 101,733,326 (GRCm39)	D92N	probably damaging	Het
Trpm1	G	A	7: 63,876,530 (GRCm39)	D528N	probably damaging	Het
Ttll9	A	G	2: 152,842,156 (GRCm39)	S337G	possibly damaging	Het
Utrn	A	T	10: 12,351,018 (GRCm39)	I355N	probably damaging	Het
Vangl1	A	G	3: 102,070,782 (GRCm39)	S385P	probably benign	Het
Vmn1r209	A	G	13: 22,990,409 (GRCm39)	S94P	possibly damaging	Het
Vmn2r28	T	A	7: 5,496,810 (GRCm39)	Q14L	probably benign	Het
Vps45	A	G	3: 95,954,557 (GRCm39)		probably null	Het
Wdr48	T	C	9: 119,733,396 (GRCm39)	V81A	probably benign	Het
Xpnpep2	A	G	X: 47,214,230 (GRCm39)	N476S	probably benign	Het
Zbtb41	A	T	1: 139,374,660 (GRCm39)	K707*	probably null	Het
Zfp442	A	C	2: 150,250,983 (GRCm39)	C306W	probably damaging	Het
Zfp811	T	C	17: 33,017,116 (GRCm39)	N307S	possibly damaging	Het
Zfp976	A	G	7: 42,265,735 (GRCm39)	W17R	probably damaging	Het
Zyg11b	T	C	4: 108,123,290 (GRCm39)	T226A	possibly damaging	Het

Other mutations in Nynrin

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01020:Nynrin	APN	14	56,105,905 (GRCm39)	missense	probably benign	0.38
IGL01131:Nynrin	APN	14	56,110,142 (GRCm39)	missense	probably damaging	1.00
IGL01357:Nynrin	APN	14	56,107,874 (GRCm39)	missense	probably benign
IGL01537:Nynrin	APN	14	56,109,502 (GRCm39)	missense	possibly damaging	0.87
IGL01583:Nynrin	APN	14	56,107,968 (GRCm39)	missense	probably damaging	1.00
IGL01726:Nynrin	APN	14	56,101,611 (GRCm39)	missense	probably benign
IGL02161:Nynrin	APN	14	56,101,441 (GRCm39)	missense	probably damaging	1.00
IGL02167:Nynrin	APN	14	56,100,792 (GRCm39)	missense	probably damaging	1.00
IGL02247:Nynrin	APN	14	56,109,167 (GRCm39)	nonsense	probably null
IGL02302:Nynrin	APN	14	56,105,962 (GRCm39)	missense	probably benign	0.43
IGL02524:Nynrin	APN	14	56,108,931 (GRCm39)	missense	possibly damaging	0.73
IGL02600:Nynrin	APN	14	56,101,449 (GRCm39)	missense	probably benign	0.38
IGL02639:Nynrin	APN	14	56,108,112 (GRCm39)	missense	probably damaging	1.00
IGL02654:Nynrin	APN	14	56,100,716 (GRCm39)	missense	possibly damaging	0.95
IGL02659:Nynrin	APN	14	56,103,554 (GRCm39)	unclassified	probably benign
IGL02736:Nynrin	APN	14	56,108,366 (GRCm39)	missense	probably damaging	1.00
IGL02949:Nynrin	APN	14	56,109,837 (GRCm39)	missense	probably damaging	0.99
PIT4458001:Nynrin	UTSW	14	56,101,425 (GRCm39)	missense	probably benign	0.39
R0017:Nynrin	UTSW	14	56,109,852 (GRCm39)	missense	probably damaging	1.00
R0078:Nynrin	UTSW	14	56,100,789 (GRCm39)	missense	probably damaging	1.00
R0211:Nynrin	UTSW	14	56,109,255 (GRCm39)	missense	probably benign	0.08
R0211:Nynrin	UTSW	14	56,109,255 (GRCm39)	missense	probably benign	0.08
R0413:Nynrin	UTSW	14	56,109,648 (GRCm39)	missense	possibly damaging	0.90
R0609:Nynrin	UTSW	14	56,110,218 (GRCm39)	missense	probably damaging	1.00
R0626:Nynrin	UTSW	14	56,105,492 (GRCm39)	missense	probably damaging	1.00
R1205:Nynrin	UTSW	14	56,091,646 (GRCm39)	intron	probably benign
R1222:Nynrin	UTSW	14	56,100,998 (GRCm39)	missense	probably benign	0.02
R1385:Nynrin	UTSW	14	56,102,356 (GRCm39)	missense	probably benign	0.00
R1820:Nynrin	UTSW	14	56,107,835 (GRCm39)	missense	possibly damaging	0.95
R1874:Nynrin	UTSW	14	56,100,950 (GRCm39)	missense	probably benign	0.04
R1927:Nynrin	UTSW	14	56,101,049 (GRCm39)	missense	probably benign	0.00
R2233:Nynrin	UTSW	14	56,109,524 (GRCm39)	missense	possibly damaging	0.83
R3018:Nynrin	UTSW	14	56,100,867 (GRCm39)	missense	probably benign	0.00
R3154:Nynrin	UTSW	14	56,101,044 (GRCm39)	missense	possibly damaging	0.46
R3853:Nynrin	UTSW	14	56,101,562 (GRCm39)	missense	probably benign	0.24
R4648:Nynrin	UTSW	14	56,110,351 (GRCm39)	nonsense	probably null
R4722:Nynrin	UTSW	14	56,091,852 (GRCm39)	missense	probably damaging	0.97
R4735:Nynrin	UTSW	14	56,107,625 (GRCm39)	missense	probably benign	0.03
R4736:Nynrin	UTSW	14	56,101,454 (GRCm39)	missense	probably damaging	1.00
R4780:Nynrin	UTSW	14	56,100,720 (GRCm39)	missense	probably damaging	1.00
R4804:Nynrin	UTSW	14	56,102,326 (GRCm39)	missense	probably benign
R4816:Nynrin	UTSW	14	56,109,458 (GRCm39)	missense	probably damaging	1.00
R5307:Nynrin	UTSW	14	56,101,263 (GRCm39)	missense	probably damaging	1.00
R5372:Nynrin	UTSW	14	56,105,948 (GRCm39)	missense	probably benign	0.01
R5432:Nynrin	UTSW	14	56,101,923 (GRCm39)	missense	possibly damaging	0.80
R5800:Nynrin	UTSW	14	56,108,088 (GRCm39)	missense	probably damaging	1.00
R5825:Nynrin	UTSW	14	56,101,683 (GRCm39)	missense	probably benign	0.00
R6149:Nynrin	UTSW	14	56,091,780 (GRCm39)	missense	possibly damaging	0.83
R6244:Nynrin	UTSW	14	56,105,485 (GRCm39)	missense	probably damaging	1.00
R6350:Nynrin	UTSW	14	56,105,533 (GRCm39)	missense	probably benign	0.19
R6379:Nynrin	UTSW	14	56,107,848 (GRCm39)	missense	probably damaging	1.00
R6437:Nynrin	UTSW	14	56,109,227 (GRCm39)	missense	probably benign	0.00
R6501:Nynrin	UTSW	14	56,100,989 (GRCm39)	missense	probably benign
R6702:Nynrin	UTSW	14	56,101,935 (GRCm39)	missense	possibly damaging	0.80
R6703:Nynrin	UTSW	14	56,101,935 (GRCm39)	missense	possibly damaging	0.80
R6907:Nynrin	UTSW	14	56,101,335 (GRCm39)	missense	probably benign	0.20
R6908:Nynrin	UTSW	14	56,101,335 (GRCm39)	missense	probably benign	0.20
R6928:Nynrin	UTSW	14	56,101,335 (GRCm39)	missense	probably benign	0.20
R6934:Nynrin	UTSW	14	56,101,335 (GRCm39)	missense	probably benign	0.20
R6935:Nynrin	UTSW	14	56,101,335 (GRCm39)	missense	probably benign	0.20
R7197:Nynrin	UTSW	14	56,109,380 (GRCm39)	missense	probably benign	0.00
R7204:Nynrin	UTSW	14	56,110,190 (GRCm39)	missense	probably damaging	1.00
R7272:Nynrin	UTSW	14	56,107,872 (GRCm39)	missense	probably damaging	1.00
R7335:Nynrin	UTSW	14	56,101,371 (GRCm39)	missense	probably benign
R7361:Nynrin	UTSW	14	56,107,857 (GRCm39)	missense	possibly damaging	0.71
R7368:Nynrin	UTSW	14	56,107,968 (GRCm39)	missense	probably damaging	1.00
R7443:Nynrin	UTSW	14	56,108,873 (GRCm39)	missense	probably benign	0.18
R7584:Nynrin	UTSW	14	56,109,041 (GRCm39)	missense	probably damaging	1.00
R7677:Nynrin	UTSW	14	56,107,693 (GRCm39)	missense	probably benign
R7723:Nynrin	UTSW	14	56,109,502 (GRCm39)	missense	possibly damaging	0.87
R7776:Nynrin	UTSW	14	56,103,420 (GRCm39)	missense	probably damaging	1.00
R7787:Nynrin	UTSW	14	56,107,980 (GRCm39)	missense	probably benign
R7842:Nynrin	UTSW	14	56,102,553 (GRCm39)	missense	probably damaging	1.00
R7852:Nynrin	UTSW	14	56,108,886 (GRCm39)	missense	probably damaging	0.96
R8040:Nynrin	UTSW	14	56,108,982 (GRCm39)	missense	probably benign	0.01
R8159:Nynrin	UTSW	14	56,102,517 (GRCm39)	missense	probably benign
R8159:Nynrin	UTSW	14	56,100,587 (GRCm39)	missense	probably damaging	0.99
R8258:Nynrin	UTSW	14	56,100,815 (GRCm39)	missense	possibly damaging	0.95
R8259:Nynrin	UTSW	14	56,100,815 (GRCm39)	missense	possibly damaging	0.95
R8343:Nynrin	UTSW	14	56,101,248 (GRCm39)	missense	probably benign
R8504:Nynrin	UTSW	14	56,107,703 (GRCm39)	missense	probably benign	0.01
R8671:Nynrin	UTSW	14	56,107,899 (GRCm39)	missense	possibly damaging	0.52
R8691:Nynrin	UTSW	14	56,110,106 (GRCm39)	missense	probably damaging	1.00
R8777:Nynrin	UTSW	14	56,109,120 (GRCm39)	missense	probably benign
R8777-TAIL:Nynrin	UTSW	14	56,109,120 (GRCm39)	missense	probably benign
R9041:Nynrin	UTSW	14	56,108,753 (GRCm39)	missense	possibly damaging	0.83
R9346:Nynrin	UTSW	14	56,100,495 (GRCm39)	missense	probably benign	0.01
R9366:Nynrin	UTSW	14	56,100,587 (GRCm39)	missense	probably damaging	0.99
R9690:Nynrin	UTSW	14	56,108,204 (GRCm39)	missense	probably benign	0.00
RF007:Nynrin	UTSW	14	56,103,658 (GRCm39)	splice site	probably null

Predicted Primers

PCR Primer
(F):5'- TTGTCTCTCCCCAGGAATGG -3'
(R):5'- TGGCACATTCTCCAAGTACCC -3'

Sequencing Primer
(F):5'- CCCAGGAATGGCAGCAGTG -3'
(R):5'- GATGTGTTATAGGGACATCCACC -3'

Posted On

2014-06-23