Incidental Mutation 'R7197:Nynrin'
ID |
560039 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Nynrin
|
Ensembl Gene |
ENSMUSG00000075592 |
Gene Name |
NYN domain and retroviral integrase containing |
Synonyms |
|
MMRRC Submission |
045276-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R7197 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
14 |
Chromosomal Location |
56091572-56112193 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 56109380 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Phenylalanine
at position 1496
(I1496F)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000098098
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000100529]
[ENSMUST00000168479]
|
AlphaFold |
Q5DTZ0 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000100529
AA Change: I1496F
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
SMART Domains |
Protein: ENSMUSP00000098098 Gene: ENSMUSG00000075592 AA Change: I1496F
Domain | Start | End | E-Value | Type |
low complexity region
|
581 |
606 |
N/A |
INTRINSIC |
Pfam:RNase_Zc3h12a
|
739 |
890 |
1.6e-54 |
PFAM |
low complexity region
|
938 |
952 |
N/A |
INTRINSIC |
low complexity region
|
1212 |
1228 |
N/A |
INTRINSIC |
low complexity region
|
1390 |
1397 |
N/A |
INTRINSIC |
PDB:3S3O|B
|
1478 |
1706 |
6e-8 |
PDB |
SCOP:d1cxqa_
|
1552 |
1646 |
2e-12 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000168479
AA Change: I1496F
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
SMART Domains |
Protein: ENSMUSP00000129557 Gene: ENSMUSG00000075592 AA Change: I1496F
Domain | Start | End | E-Value | Type |
low complexity region
|
581 |
606 |
N/A |
INTRINSIC |
Pfam:RNase_Zc3h12a
|
739 |
890 |
5.5e-54 |
PFAM |
low complexity region
|
938 |
952 |
N/A |
INTRINSIC |
low complexity region
|
1212 |
1228 |
N/A |
INTRINSIC |
low complexity region
|
1390 |
1397 |
N/A |
INTRINSIC |
PDB:3S3O|B
|
1478 |
1706 |
6e-8 |
PDB |
SCOP:d1cxqa_
|
1552 |
1646 |
2e-12 |
SMART |
|
Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.8%
- 20x: 99.3%
|
Validation Efficiency |
97% (77/79) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 77 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1700017B05Rik |
AGCTTCCCTGCTT |
AGCTT |
9: 57,165,505 (GRCm39) |
|
probably null |
Het |
Aars2 |
T |
C |
17: 45,819,885 (GRCm39) |
Y221H |
probably damaging |
Het |
Abca8b |
G |
A |
11: 109,836,648 (GRCm39) |
R1216* |
probably null |
Het |
Acad8 |
A |
T |
9: 26,888,967 (GRCm39) |
|
probably null |
Het |
Acer2 |
A |
G |
4: 86,805,287 (GRCm39) |
T84A |
probably null |
Het |
Adgrb2 |
A |
G |
4: 129,903,315 (GRCm39) |
N613S |
probably damaging |
Het |
Arap2 |
T |
C |
5: 62,798,729 (GRCm39) |
D1300G |
possibly damaging |
Het |
Castor1 |
T |
C |
11: 4,168,949 (GRCm39) |
C39R |
probably damaging |
Het |
Ccl11 |
A |
T |
11: 81,948,665 (GRCm39) |
|
probably benign |
Het |
Cfh |
A |
T |
1: 140,016,505 (GRCm39) |
Y1151* |
probably null |
Het |
Cobll1 |
A |
G |
2: 64,928,882 (GRCm39) |
S815P |
probably benign |
Het |
Cryz |
T |
C |
3: 154,327,205 (GRCm39) |
S240P |
probably damaging |
Het |
Csmd2 |
A |
G |
4: 128,404,826 (GRCm39) |
Y2404C |
|
Het |
F13a1 |
T |
C |
13: 37,100,860 (GRCm39) |
D428G |
probably damaging |
Het |
Fbxo42 |
A |
G |
4: 140,927,396 (GRCm39) |
S559G |
probably benign |
Het |
Fry |
A |
G |
5: 150,393,232 (GRCm39) |
S263G |
|
Het |
Fshr |
C |
T |
17: 89,292,897 (GRCm39) |
A594T |
probably damaging |
Het |
Gm1527 |
A |
G |
3: 28,980,690 (GRCm39) |
M597V |
probably null |
Het |
Gpr158 |
A |
T |
2: 21,815,412 (GRCm39) |
T602S |
probably damaging |
Het |
Hmgxb4 |
C |
A |
8: 75,756,624 (GRCm39) |
T583K |
probably damaging |
Het |
Igkv8-30 |
C |
T |
6: 70,094,069 (GRCm39) |
C114Y |
probably damaging |
Het |
Igsf5 |
T |
A |
16: 96,204,546 (GRCm39) |
N366K |
probably damaging |
Het |
Kif15 |
T |
C |
9: 122,838,991 (GRCm39) |
|
probably null |
Het |
Klk1b26 |
T |
A |
7: 43,665,821 (GRCm39) |
|
probably null |
Het |
Lama1 |
G |
T |
17: 68,044,700 (GRCm39) |
E200* |
probably null |
Het |
Lpar5 |
C |
T |
6: 125,059,347 (GRCm39) |
T356I |
probably benign |
Het |
Lrch3 |
A |
T |
16: 32,810,665 (GRCm39) |
T538S |
probably damaging |
Het |
Mansc4 |
A |
G |
6: 146,977,203 (GRCm39) |
S138P |
probably damaging |
Het |
Mief1 |
T |
C |
15: 80,134,061 (GRCm39) |
S373P |
possibly damaging |
Het |
Nbas |
G |
T |
12: 13,570,751 (GRCm39) |
V2053F |
possibly damaging |
Het |
Nek11 |
T |
C |
9: 105,121,614 (GRCm39) |
E435G |
probably damaging |
Het |
Odf1 |
A |
T |
15: 38,219,794 (GRCm39) |
M41L |
probably benign |
Het |
Or10a5 |
A |
G |
7: 106,635,364 (GRCm39) |
M8V |
probably benign |
Het |
Or4c115 |
A |
G |
2: 88,927,626 (GRCm39) |
V215A |
probably benign |
Het |
Or4c29 |
A |
T |
2: 88,740,708 (GRCm39) |
F10I |
probably benign |
Het |
Or7h8 |
T |
G |
9: 20,123,851 (GRCm39) |
S69A |
probably benign |
Het |
Oxnad1 |
T |
C |
14: 31,818,473 (GRCm39) |
V106A |
possibly damaging |
Het |
Padi4 |
C |
A |
4: 140,488,969 (GRCm39) |
E157* |
probably null |
Het |
Parp10 |
A |
T |
15: 76,126,616 (GRCm39) |
F217L |
probably damaging |
Het |
Pcdhb18 |
T |
A |
18: 37,623,436 (GRCm39) |
S255R |
probably benign |
Het |
Pde4c |
G |
T |
8: 71,197,978 (GRCm39) |
G102W |
probably damaging |
Het |
Pde6a |
T |
C |
18: 61,391,295 (GRCm39) |
Y547H |
probably damaging |
Het |
Phf11b |
A |
T |
14: 59,563,507 (GRCm39) |
L137I |
probably benign |
Het |
Pigh |
A |
C |
12: 79,130,463 (GRCm39) |
I134S |
probably damaging |
Het |
Pigt |
G |
A |
2: 164,344,436 (GRCm39) |
V362M |
probably damaging |
Het |
Pld1 |
A |
G |
3: 28,078,401 (GRCm39) |
D20G |
probably damaging |
Het |
Pou3f2 |
T |
C |
4: 22,487,288 (GRCm39) |
R282G |
probably damaging |
Het |
Ppp2r5d |
A |
G |
17: 46,996,527 (GRCm39) |
V382A |
probably damaging |
Het |
Prdm16 |
T |
C |
4: 154,425,967 (GRCm39) |
E606G |
probably damaging |
Het |
Psg28 |
A |
G |
7: 18,164,509 (GRCm39) |
Y68H |
probably damaging |
Het |
Qpctl |
C |
A |
7: 18,882,944 (GRCm39) |
W56L |
probably damaging |
Het |
Rab11fip5 |
G |
A |
6: 85,319,137 (GRCm39) |
P584L |
probably damaging |
Het |
Sde2 |
C |
T |
1: 180,678,843 (GRCm39) |
H36Y |
probably benign |
Het |
Sema4d |
T |
C |
13: 51,856,872 (GRCm39) |
S787G |
probably benign |
Het |
Sgca |
C |
T |
11: 94,864,014 (GRCm39) |
|
probably null |
Het |
Shroom3 |
A |
G |
5: 93,090,463 (GRCm39) |
E1071G |
probably damaging |
Het |
Skint5 |
A |
G |
4: 113,437,679 (GRCm39) |
|
probably null |
Het |
Slc44a3 |
T |
A |
3: 121,319,411 (GRCm39) |
D110V |
probably benign |
Het |
Slc4a4 |
A |
C |
5: 89,082,433 (GRCm39) |
|
probably benign |
Het |
Slc4a8 |
A |
G |
15: 100,688,857 (GRCm39) |
D389G |
probably damaging |
Het |
Sp3 |
C |
G |
2: 72,809,953 (GRCm39) |
E11Q |
probably benign |
Het |
Srrm2 |
A |
G |
17: 24,037,198 (GRCm39) |
S1281G |
unknown |
Het |
Tat |
A |
T |
8: 110,723,459 (GRCm39) |
I316F |
probably benign |
Het |
Thoc5 |
A |
G |
11: 4,865,563 (GRCm39) |
T381A |
probably benign |
Het |
Tiam1 |
T |
C |
16: 89,681,826 (GRCm39) |
Y384C |
probably damaging |
Het |
Tmem45a |
A |
T |
16: 56,632,026 (GRCm39) |
F197L |
probably damaging |
Het |
Trav8d-1 |
A |
G |
14: 53,016,435 (GRCm39) |
Y107C |
probably damaging |
Het |
Trim10 |
T |
A |
17: 37,187,846 (GRCm39) |
V354D |
probably damaging |
Het |
Unc45b |
A |
T |
11: 82,831,013 (GRCm39) |
|
probably null |
Het |
Unc79 |
A |
G |
12: 103,078,765 (GRCm39) |
I1643M |
probably benign |
Het |
Unc80 |
G |
T |
1: 66,560,725 (GRCm39) |
G818* |
probably null |
Het |
Usp15 |
A |
T |
10: 122,966,910 (GRCm39) |
M470K |
possibly damaging |
Het |
Vldlr |
T |
C |
19: 27,212,241 (GRCm39) |
V85A |
probably benign |
Het |
Vma21-ps |
A |
G |
4: 52,496,994 (GRCm39) |
V84A |
probably benign |
Het |
Vmn2r67 |
C |
T |
7: 84,785,774 (GRCm39) |
V744I |
possibly damaging |
Het |
Wdr73 |
A |
G |
7: 80,542,946 (GRCm39) |
C221R |
probably benign |
Het |
Zxdc |
C |
T |
6: 90,355,819 (GRCm39) |
H443Y |
probably damaging |
Het |
|
Other mutations in Nynrin |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01020:Nynrin
|
APN |
14 |
56,105,905 (GRCm39) |
missense |
probably benign |
0.38 |
IGL01131:Nynrin
|
APN |
14 |
56,110,142 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01357:Nynrin
|
APN |
14 |
56,107,874 (GRCm39) |
missense |
probably benign |
|
IGL01537:Nynrin
|
APN |
14 |
56,109,502 (GRCm39) |
missense |
possibly damaging |
0.87 |
IGL01583:Nynrin
|
APN |
14 |
56,107,968 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01726:Nynrin
|
APN |
14 |
56,101,611 (GRCm39) |
missense |
probably benign |
|
IGL02161:Nynrin
|
APN |
14 |
56,101,441 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02167:Nynrin
|
APN |
14 |
56,100,792 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02247:Nynrin
|
APN |
14 |
56,109,167 (GRCm39) |
nonsense |
probably null |
|
IGL02302:Nynrin
|
APN |
14 |
56,105,962 (GRCm39) |
missense |
probably benign |
0.43 |
IGL02524:Nynrin
|
APN |
14 |
56,108,931 (GRCm39) |
missense |
possibly damaging |
0.73 |
IGL02600:Nynrin
|
APN |
14 |
56,101,449 (GRCm39) |
missense |
probably benign |
0.38 |
IGL02639:Nynrin
|
APN |
14 |
56,108,112 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02654:Nynrin
|
APN |
14 |
56,100,716 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL02659:Nynrin
|
APN |
14 |
56,103,554 (GRCm39) |
unclassified |
probably benign |
|
IGL02736:Nynrin
|
APN |
14 |
56,108,366 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02949:Nynrin
|
APN |
14 |
56,109,837 (GRCm39) |
missense |
probably damaging |
0.99 |
PIT4458001:Nynrin
|
UTSW |
14 |
56,101,425 (GRCm39) |
missense |
probably benign |
0.39 |
R0017:Nynrin
|
UTSW |
14 |
56,109,852 (GRCm39) |
missense |
probably damaging |
1.00 |
R0078:Nynrin
|
UTSW |
14 |
56,100,789 (GRCm39) |
missense |
probably damaging |
1.00 |
R0211:Nynrin
|
UTSW |
14 |
56,109,255 (GRCm39) |
missense |
probably benign |
0.08 |
R0211:Nynrin
|
UTSW |
14 |
56,109,255 (GRCm39) |
missense |
probably benign |
0.08 |
R0413:Nynrin
|
UTSW |
14 |
56,109,648 (GRCm39) |
missense |
possibly damaging |
0.90 |
R0609:Nynrin
|
UTSW |
14 |
56,110,218 (GRCm39) |
missense |
probably damaging |
1.00 |
R0626:Nynrin
|
UTSW |
14 |
56,105,492 (GRCm39) |
missense |
probably damaging |
1.00 |
R1205:Nynrin
|
UTSW |
14 |
56,091,646 (GRCm39) |
intron |
probably benign |
|
R1222:Nynrin
|
UTSW |
14 |
56,100,998 (GRCm39) |
missense |
probably benign |
0.02 |
R1385:Nynrin
|
UTSW |
14 |
56,102,356 (GRCm39) |
missense |
probably benign |
0.00 |
R1820:Nynrin
|
UTSW |
14 |
56,107,835 (GRCm39) |
missense |
possibly damaging |
0.95 |
R1829:Nynrin
|
UTSW |
14 |
56,110,404 (GRCm39) |
missense |
possibly damaging |
0.50 |
R1874:Nynrin
|
UTSW |
14 |
56,100,950 (GRCm39) |
missense |
probably benign |
0.04 |
R1927:Nynrin
|
UTSW |
14 |
56,101,049 (GRCm39) |
missense |
probably benign |
0.00 |
R2233:Nynrin
|
UTSW |
14 |
56,109,524 (GRCm39) |
missense |
possibly damaging |
0.83 |
R3018:Nynrin
|
UTSW |
14 |
56,100,867 (GRCm39) |
missense |
probably benign |
0.00 |
R3154:Nynrin
|
UTSW |
14 |
56,101,044 (GRCm39) |
missense |
possibly damaging |
0.46 |
R3853:Nynrin
|
UTSW |
14 |
56,101,562 (GRCm39) |
missense |
probably benign |
0.24 |
R4648:Nynrin
|
UTSW |
14 |
56,110,351 (GRCm39) |
nonsense |
probably null |
|
R4722:Nynrin
|
UTSW |
14 |
56,091,852 (GRCm39) |
missense |
probably damaging |
0.97 |
R4735:Nynrin
|
UTSW |
14 |
56,107,625 (GRCm39) |
missense |
probably benign |
0.03 |
R4736:Nynrin
|
UTSW |
14 |
56,101,454 (GRCm39) |
missense |
probably damaging |
1.00 |
R4780:Nynrin
|
UTSW |
14 |
56,100,720 (GRCm39) |
missense |
probably damaging |
1.00 |
R4804:Nynrin
|
UTSW |
14 |
56,102,326 (GRCm39) |
missense |
probably benign |
|
R4816:Nynrin
|
UTSW |
14 |
56,109,458 (GRCm39) |
missense |
probably damaging |
1.00 |
R5307:Nynrin
|
UTSW |
14 |
56,101,263 (GRCm39) |
missense |
probably damaging |
1.00 |
R5372:Nynrin
|
UTSW |
14 |
56,105,948 (GRCm39) |
missense |
probably benign |
0.01 |
R5432:Nynrin
|
UTSW |
14 |
56,101,923 (GRCm39) |
missense |
possibly damaging |
0.80 |
R5800:Nynrin
|
UTSW |
14 |
56,108,088 (GRCm39) |
missense |
probably damaging |
1.00 |
R5825:Nynrin
|
UTSW |
14 |
56,101,683 (GRCm39) |
missense |
probably benign |
0.00 |
R6149:Nynrin
|
UTSW |
14 |
56,091,780 (GRCm39) |
missense |
possibly damaging |
0.83 |
R6244:Nynrin
|
UTSW |
14 |
56,105,485 (GRCm39) |
missense |
probably damaging |
1.00 |
R6350:Nynrin
|
UTSW |
14 |
56,105,533 (GRCm39) |
missense |
probably benign |
0.19 |
R6379:Nynrin
|
UTSW |
14 |
56,107,848 (GRCm39) |
missense |
probably damaging |
1.00 |
R6437:Nynrin
|
UTSW |
14 |
56,109,227 (GRCm39) |
missense |
probably benign |
0.00 |
R6501:Nynrin
|
UTSW |
14 |
56,100,989 (GRCm39) |
missense |
probably benign |
|
R6702:Nynrin
|
UTSW |
14 |
56,101,935 (GRCm39) |
missense |
possibly damaging |
0.80 |
R6703:Nynrin
|
UTSW |
14 |
56,101,935 (GRCm39) |
missense |
possibly damaging |
0.80 |
R6907:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6908:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6928:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6934:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6935:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R7204:Nynrin
|
UTSW |
14 |
56,110,190 (GRCm39) |
missense |
probably damaging |
1.00 |
R7272:Nynrin
|
UTSW |
14 |
56,107,872 (GRCm39) |
missense |
probably damaging |
1.00 |
R7335:Nynrin
|
UTSW |
14 |
56,101,371 (GRCm39) |
missense |
probably benign |
|
R7361:Nynrin
|
UTSW |
14 |
56,107,857 (GRCm39) |
missense |
possibly damaging |
0.71 |
R7368:Nynrin
|
UTSW |
14 |
56,107,968 (GRCm39) |
missense |
probably damaging |
1.00 |
R7443:Nynrin
|
UTSW |
14 |
56,108,873 (GRCm39) |
missense |
probably benign |
0.18 |
R7584:Nynrin
|
UTSW |
14 |
56,109,041 (GRCm39) |
missense |
probably damaging |
1.00 |
R7677:Nynrin
|
UTSW |
14 |
56,107,693 (GRCm39) |
missense |
probably benign |
|
R7723:Nynrin
|
UTSW |
14 |
56,109,502 (GRCm39) |
missense |
possibly damaging |
0.87 |
R7776:Nynrin
|
UTSW |
14 |
56,103,420 (GRCm39) |
missense |
probably damaging |
1.00 |
R7787:Nynrin
|
UTSW |
14 |
56,107,980 (GRCm39) |
missense |
probably benign |
|
R7842:Nynrin
|
UTSW |
14 |
56,102,553 (GRCm39) |
missense |
probably damaging |
1.00 |
R7852:Nynrin
|
UTSW |
14 |
56,108,886 (GRCm39) |
missense |
probably damaging |
0.96 |
R8040:Nynrin
|
UTSW |
14 |
56,108,982 (GRCm39) |
missense |
probably benign |
0.01 |
R8159:Nynrin
|
UTSW |
14 |
56,102,517 (GRCm39) |
missense |
probably benign |
|
R8159:Nynrin
|
UTSW |
14 |
56,100,587 (GRCm39) |
missense |
probably damaging |
0.99 |
R8258:Nynrin
|
UTSW |
14 |
56,100,815 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8259:Nynrin
|
UTSW |
14 |
56,100,815 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8343:Nynrin
|
UTSW |
14 |
56,101,248 (GRCm39) |
missense |
probably benign |
|
R8504:Nynrin
|
UTSW |
14 |
56,107,703 (GRCm39) |
missense |
probably benign |
0.01 |
R8671:Nynrin
|
UTSW |
14 |
56,107,899 (GRCm39) |
missense |
possibly damaging |
0.52 |
R8691:Nynrin
|
UTSW |
14 |
56,110,106 (GRCm39) |
missense |
probably damaging |
1.00 |
R8777:Nynrin
|
UTSW |
14 |
56,109,120 (GRCm39) |
missense |
probably benign |
|
R8777-TAIL:Nynrin
|
UTSW |
14 |
56,109,120 (GRCm39) |
missense |
probably benign |
|
R9041:Nynrin
|
UTSW |
14 |
56,108,753 (GRCm39) |
missense |
possibly damaging |
0.83 |
R9346:Nynrin
|
UTSW |
14 |
56,100,495 (GRCm39) |
missense |
probably benign |
0.01 |
R9366:Nynrin
|
UTSW |
14 |
56,100,587 (GRCm39) |
missense |
probably damaging |
0.99 |
R9690:Nynrin
|
UTSW |
14 |
56,108,204 (GRCm39) |
missense |
probably benign |
0.00 |
RF007:Nynrin
|
UTSW |
14 |
56,103,658 (GRCm39) |
splice site |
probably null |
|
|
Predicted Primers |
PCR Primer
(F):5'- CACCCTGGCCGATATCATTG -3'
(R):5'- AATCTGCAGACTGGACCAAG -3'
Sequencing Primer
(F):5'- ATCATTGCCAAGTTGCAGGC -3'
(R):5'- AAGGGGCTGTCGACCTGAG -3'
|
Posted On |
2019-06-26 |