Mutagenetix > Incidental Mutation

Incidental Mutation 'R4671:Gin1'

348399

Institutional Source

Beutler Lab

Gene Symbol

Gin1

Ensembl Gene

ENSMUSG00000026333

Gene Name

gypsy retrotransposon integrase 1

Synonyms

4930429M06, 4930429M06Rik, Zh2c2

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4671 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

97697897-97721434 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 97712565 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Proline to Serine at position 154 (P154S)

Ref Sequence

ENSEMBL: ENSMUSP00000027571 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027571] [ENSMUST00000112844] [ENSMUST00000138142]

AlphaFold

Q8K259

Predicted Effect

probably damaging
Transcript: ENSMUST00000027571
AA Change: P154S

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000027571
Gene: ENSMUSG00000026333
AA Change: P154S

Domain	Start	End	E-Value	Type
low complexity region	63	73	N/A	INTRINSIC
SCOP:d1exqa_	112	208	2e-5	SMART
low complexity region	254	264	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112844
AA Change: P243S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000108464
Gene: ENSMUSG00000026333
AA Change: P243S

Domain	Start	End	E-Value	Type
low complexity region	63	73	N/A	INTRINSIC
PDB:4IKF\|B	84	289	3e-8	PDB
SCOP:d1exqa_	145	297	4e-16	SMART
low complexity region	343	353	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000138142

Predicted Effect

probably benign
Transcript: ENSMUST00000189031

Meta Mutation Damage Score

0.0915

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc2	T	C	19: 43,789,157 (GRCm39)	S271P	probably benign	Het
Acod1	T	G	14: 103,284,508 (GRCm39)	M2R	probably benign	Het
Adamts20	T	C	15: 94,301,206 (GRCm39)	E106G	possibly damaging	Het
Adgra3	G	A	5: 50,136,710 (GRCm39)	T661M	probably damaging	Het
Akap13	T	A	7: 75,229,312 (GRCm39)	C161*	probably null	Het
Akr1c12	A	C	13: 4,323,816 (GRCm39)	S162A	possibly damaging	Het
Anks1	C	A	17: 28,270,552 (GRCm39)	H805N	probably benign	Het
Arhgap22	T	C	14: 33,084,500 (GRCm39)	C260R	probably damaging	Het
Banf1	T	C	19: 5,415,872 (GRCm39)	R33G	probably benign	Het
Bcas1	T	C	2: 170,226,245 (GRCm39)	K310R	probably damaging	Het
Cacna1c	G	T	6: 118,629,019 (GRCm39)	H1240N	probably damaging	Het
Cartpt	C	T	13: 100,036,588 (GRCm39)		probably null	Het
Ccdc127	T	A	13: 74,505,164 (GRCm39)	Y237*	probably null	Het
Ccnb1ip1	A	T	14: 51,029,734 (GRCm39)	Y109*	probably null	Het
Cenpj	A	T	14: 56,790,840 (GRCm39)	V403E	possibly damaging	Het
Cps1	A	G	1: 67,235,719 (GRCm39)	Y951C	probably damaging	Het
Dcakd	T	C	11: 102,890,634 (GRCm39)	E51G	possibly damaging	Het
Dennd4a	A	T	9: 64,801,689 (GRCm39)	N944I	probably benign	Het
Dus3l	C	T	17: 57,075,566 (GRCm39)	R430C	probably benign	Het
Dync2h1	A	G	9: 7,169,640 (GRCm39)	L279P	possibly damaging	Het
Dzip3	G	A	16: 48,799,953 (GRCm39)	Q112*	probably null	Het
Eif1ad	T	A	19: 5,418,219 (GRCm39)	M1K	probably null	Het
Fabp3	C	T	4: 130,206,180 (GRCm39)	T57I	probably benign	Het
Fancg	T	C	4: 43,005,272 (GRCm39)	E366G	probably benign	Het
Gm11938	A	T	11: 99,493,832 (GRCm39)	C88S	possibly damaging	Het
Gpr183	T	C	14: 122,192,149 (GRCm39)	D124G	probably damaging	Het
Gucy2g	T	A	19: 55,226,500 (GRCm39)	I139F	probably damaging	Het
Iqub	A	T	6: 24,479,183 (GRCm39)	M453K	probably benign	Het
Jcad	A	G	18: 4,674,175 (GRCm39)	T646A	probably benign	Het
Kif23	A	T	9: 61,852,641 (GRCm39)	D24E	probably benign	Het
Kmt2c	T	C	5: 25,571,175 (GRCm39)	N845S	probably damaging	Het
Lhx5	G	A	5: 120,578,032 (GRCm39)	S284N	probably benign	Het
Lipf	T	G	19: 33,954,076 (GRCm39)	V389G	possibly damaging	Het
Lrrc7	C	T	3: 157,908,132 (GRCm39)		probably null	Het
Magi1	A	G	6: 93,657,768 (GRCm39)		probably null	Het
Mast2	A	G	4: 116,165,847 (GRCm39)	S1287P	probably damaging	Het
Mepce	C	T	5: 137,784,905 (GRCm39)		probably benign	Het
Mkrn1	A	G	6: 39,382,691 (GRCm39)	V173A	probably damaging	Het
Myo1c	C	T	11: 75,560,856 (GRCm39)	R770*	probably null	Het
Naip6	A	G	13: 100,431,239 (GRCm39)		probably null	Het
Nsmce3	A	T	7: 64,522,530 (GRCm39)	L46Q	probably benign	Het
Or1n2	G	A	2: 36,797,405 (GRCm39)	C149Y	probably benign	Het
Or2j6	T	G	7: 139,980,218 (GRCm39)	Y247S	probably damaging	Het
Or4k44	A	T	2: 111,368,280 (GRCm39)	M118K	probably damaging	Het
Or51e2	A	G	7: 102,391,808 (GRCm39)	V134A	probably damaging	Het
Or56a3b	T	C	7: 104,771,513 (GRCm39)	L283P	probably damaging	Het
Parp14	A	G	16: 35,678,691 (GRCm39)	F426L	probably benign	Het
Pcf11	A	T	7: 92,306,737 (GRCm39)	S1144T	possibly damaging	Het
Prpf3	T	A	3: 95,758,976 (GRCm39)	T59S	possibly damaging	Het
Ptgir	A	G	7: 16,640,794 (GRCm39)	M29V	possibly damaging	Het
Ptk7	A	G	17: 46,885,392 (GRCm39)	V678A	probably benign	Het
Rb1	A	G	14: 73,511,116 (GRCm39)	L331S	probably damaging	Het
Relch	A	G	1: 105,646,584 (GRCm39)	I637V	probably benign	Het
Sell	A	G	1: 163,893,042 (GRCm39)	Y86C	probably damaging	Het
Serpina1e	G	A	12: 103,914,341 (GRCm39)	R328W	probably damaging	Het
Sertad3	T	G	7: 27,176,091 (GRCm39)	L175R	possibly damaging	Het
Stard9	G	T	2: 120,529,121 (GRCm39)	G1793W	probably damaging	Het
Stra6	T	C	9: 58,056,517 (GRCm39)	I383T	probably benign	Het
Tcf7l1	A	G	6: 72,626,161 (GRCm39)	L154P	probably damaging	Het
Tent5c	C	A	3: 100,380,515 (GRCm39)	L80F	probably benign	Het
Tonsl	A	T	15: 76,507,610 (GRCm39)	D55E	probably benign	Het
Ttc21b	A	G	2: 66,057,257 (GRCm39)	S572P	possibly damaging	Het
Ttc7	T	A	17: 87,654,048 (GRCm39)	L575Q	probably damaging	Het
Ubl4b	C	T	3: 107,462,194 (GRCm39)	S22N	probably damaging	Het
Ubr4	T	C	4: 139,163,502 (GRCm39)	V2634A	possibly damaging	Het
Zbed6	A	G	1: 133,584,778 (GRCm39)	V853A	probably benign	Het
Zfp46	A	C	4: 136,017,484 (GRCm39)	D106A	probably damaging	Het
Zfp951	A	C	5: 104,962,567 (GRCm39)	I333S	probably benign	Het

Other mutations in Gin1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01479:Gin1	APN	1	97,720,097 (GRCm39)	missense	possibly damaging	0.95
IGL01508:Gin1	APN	1	97,705,162 (GRCm39)	missense	probably benign
IGL01874:Gin1	APN	1	97,710,797 (GRCm39)	missense	probably damaging	1.00
R0136:Gin1	UTSW	1	97,710,741 (GRCm39)	missense	possibly damaging	0.86
R0299:Gin1	UTSW	1	97,710,741 (GRCm39)	missense	possibly damaging	0.86
R1302:Gin1	UTSW	1	97,703,314 (GRCm39)	nonsense	probably null
R1607:Gin1	UTSW	1	97,713,875 (GRCm39)	missense	probably damaging	1.00
R1675:Gin1	UTSW	1	97,713,780 (GRCm39)	nonsense	probably null
R1739:Gin1	UTSW	1	97,713,829 (GRCm39)	missense	probably damaging	0.99
R1769:Gin1	UTSW	1	97,720,162 (GRCm39)	missense	probably benign	0.02
R1817:Gin1	UTSW	1	97,712,951 (GRCm39)	splice site	probably null
R1818:Gin1	UTSW	1	97,712,951 (GRCm39)	splice site	probably null
R1819:Gin1	UTSW	1	97,712,951 (GRCm39)	splice site	probably null
R1907:Gin1	UTSW	1	97,703,172 (GRCm39)	unclassified	probably benign
R2325:Gin1	UTSW	1	97,720,286 (GRCm39)	missense	probably damaging	1.00
R4206:Gin1	UTSW	1	97,720,145 (GRCm39)	missense	possibly damaging	0.90
R4571:Gin1	UTSW	1	97,712,801 (GRCm39)	missense	probably damaging	1.00
R4576:Gin1	UTSW	1	97,720,064 (GRCm39)	missense	probably damaging	1.00
R4670:Gin1	UTSW	1	97,712,565 (GRCm39)	missense	probably damaging	1.00
R5659:Gin1	UTSW	1	97,703,257 (GRCm39)	missense	possibly damaging	0.95
R6360:Gin1	UTSW	1	97,720,264 (GRCm39)	missense	possibly damaging	0.90
R7035:Gin1	UTSW	1	97,720,100 (GRCm39)	missense	possibly damaging	0.92
R7229:Gin1	UTSW	1	97,712,876 (GRCm39)	missense	probably benign	0.02
R8269:Gin1	UTSW	1	97,710,929 (GRCm39)	missense	probably damaging	0.98
R8877:Gin1	UTSW	1	97,710,941 (GRCm39)	missense	possibly damaging	0.47
R9149:Gin1	UTSW	1	97,710,819 (GRCm39)	missense	probably damaging	1.00
R9480:Gin1	UTSW	1	97,705,198 (GRCm39)	missense	probably damaging	1.00
R9643:Gin1	UTSW	1	97,712,498 (GRCm39)	missense	probably benign	0.08
R9697:Gin1	UTSW	1	97,712,897 (GRCm39)	missense	probably benign	0.00
R9787:Gin1	UTSW	1	97,703,211 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGAAGACAAAATCTGGGTTTCTTG -3'
(R):5'- ACGCAAGGATTCCGATTGAAC -3'

Sequencing Primer
(F):5'- CAGAGGGAAAGTGTGAACTT -3'
(R):5'- GCAAGGATTCCGATTGAACATTTGG -3'

Posted On

2015-10-08