Mutagenetix > Incidental Mutation

Incidental Mutation 'R5159:Clic6'

396904

Institutional Source

Beutler Lab

Gene Symbol

Clic6

Ensembl Gene

ENSMUSG00000022949

Gene Name

chloride intracellular channel 6

Synonyms

CLIC1L, 5730466J16Rik

MMRRC Submission

042741-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.147) question?

Stock #

R5159 (G1)

Quality Score

176

Status

Validated

Chromosome

Chromosomal Location

92295035-92338129 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 92324954 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Asparagine at position 371 (Y371N)

Ref Sequence

ENSEMBL: ENSMUSP00000023670 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023670] [ENSMUST00000162181]

AlphaFold

Q8BHB9

Predicted Effect

probably benign
Transcript: ENSMUST00000023670
AA Change: Y371N

PolyPhen 2 Score 0.132 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000023670
Gene: ENSMUSG00000022949
AA Change: Y371N

Domain	Start	End	E-Value	Type
low complexity region	38	46	N/A	INTRINSIC
low complexity region	62	74	N/A	INTRINSIC
low complexity region	83	108	N/A	INTRINSIC
low complexity region	151	169	N/A	INTRINSIC
low complexity region	193	213	N/A	INTRINSIC
low complexity region	225	245	N/A	INTRINSIC
low complexity region	275	287	N/A	INTRINSIC
low complexity region	308	318	N/A	INTRINSIC
Pfam:GST_N_3	375	447	2e-9	PFAM
Pfam:GST_C_2	478	567	1.4e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162181
AA Change: Y30N

PolyPhen 2 Score 0.094 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000124498
Gene: ENSMUSG00000022949
AA Change: Y30N

Domain	Start	End	E-Value	Type
Pfam:GST_N_3	34	100	2.8e-10	PFAM

Meta Mutation Damage Score

0.1129

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.7%

Validation Efficiency

100% (63/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the chloride intracellular channel family of proteins. The gene is part of a large triplicated region found on chromosomes 1, 6, and 21. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Nov 2015]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9930111J21Rik1	T	C	11: 48,839,352 (GRCm39)	T412A	probably benign	Het
Aldh5a1	T	A	13: 25,097,776 (GRCm39)	M420L	possibly damaging	Het
Armc2	A	G	10: 41,884,711 (GRCm39)	S77P	probably damaging	Het
Avil	A	G	10: 126,856,317 (GRCm39)		probably null	Het
Bltp3a	A	G	17: 28,100,530 (GRCm39)	H323R	probably damaging	Het
Bmp5	T	A	9: 75,801,035 (GRCm39)	F388L	probably damaging	Het
Brca2	T	G	5: 150,465,573 (GRCm39)	V1779G	possibly damaging	Het
Cblb	T	A	16: 51,932,483 (GRCm39)	S147T	probably damaging	Het
Cblc	T	C	7: 19,519,233 (GRCm39)	E409G	probably benign	Het
Cdc34b	C	T	11: 94,632,886 (GRCm39)	R29W	probably damaging	Het
Col5a2	A	G	1: 45,425,991 (GRCm39)		probably null	Het
Coro1a	A	T	7: 126,302,221 (GRCm39)	V42D	probably damaging	Het
Cpa3	C	T	3: 20,281,387 (GRCm39)	C173Y	probably damaging	Het
Crb1	A	C	1: 139,170,756 (GRCm39)	V817G	probably damaging	Het
Cyp2c39	A	G	19: 39,549,378 (GRCm39)	T299A	possibly damaging	Het
Dock5	G	A	14: 68,029,738 (GRCm39)	R1019C	probably benign	Het
Exoc8	T	C	8: 125,622,952 (GRCm39)	T472A	probably benign	Het
Fancc	A	G	13: 63,469,679 (GRCm39)		probably null	Het
Fcgbpl1	T	A	7: 27,852,733 (GRCm39)	M1340K	probably benign	Het
Inpp5d	T	C	1: 87,604,064 (GRCm39)	L244P	probably damaging	Het
Ireb2	A	G	9: 54,799,831 (GRCm39)	N424S	probably benign	Het
Krt35	T	C	11: 99,984,875 (GRCm39)	D261G	probably damaging	Het
Lipc	T	A	9: 70,720,192 (GRCm39)	I272L	probably benign	Het
Lpcat3	A	G	6: 124,676,357 (GRCm39)		probably benign	Het
Lzts1	T	C	8: 69,591,236 (GRCm39)	D304G	probably benign	Het
Mdn1	A	G	4: 32,774,008 (GRCm39)	I5540V	possibly damaging	Het
Msln	T	C	17: 25,970,563 (GRCm39)	S231G	probably benign	Het
Mup8	G	A	4: 60,221,062 (GRCm39)	T101M	probably benign	Het
Myh8	T	C	11: 67,179,179 (GRCm39)	I524T	probably damaging	Het
Pappa2	A	G	1: 158,589,189 (GRCm39)	C1679R	probably damaging	Het
Pcdhb1	T	C	18: 37,399,416 (GRCm39)	S456P	possibly damaging	Het
Pcdhga5	A	G	18: 37,828,719 (GRCm39)	N389S	probably benign	Het
Pitrm1	C	A	13: 6,617,507 (GRCm39)	S620R	probably benign	Het
Plod3	T	A	5: 137,023,932 (GRCm39)		probably benign	Het
Por	A	T	5: 135,759,771 (GRCm39)	Q194L	probably benign	Het
Prkag3	A	T	1: 74,780,646 (GRCm39)	Y396N	probably damaging	Het
R3hcc1	T	C	14: 69,935,053 (GRCm39)		probably null	Het
Rcan3	C	T	4: 135,152,592 (GRCm39)	S43N	probably damaging	Het
Rhot1	A	G	11: 80,111,098 (GRCm39)	T31A	probably damaging	Het
Rnps1	T	G	17: 24,637,486 (GRCm39)	S43A	unknown	Het
Rp1	T	C	1: 4,416,426 (GRCm39)	D1562G	possibly damaging	Het
Rps19-ps13	A	G	18: 40,859,428 (GRCm39)		noncoding transcript	Het
Serpina3c	A	T	12: 104,115,771 (GRCm39)	S258T	possibly damaging	Het
Smc2	G	A	4: 52,460,181 (GRCm39)	R519Q	possibly damaging	Het
Sorbs2	A	T	8: 46,248,767 (GRCm39)	T593S	probably benign	Het
Sptbn2	A	G	19: 4,787,885 (GRCm39)	T955A	probably benign	Het
Stfa3	T	C	16: 36,272,581 (GRCm39)	K40E	probably damaging	Het
Tmem87b	A	G	2: 128,666,378 (GRCm39)	E75G	probably benign	Het
Tmprss15	T	C	16: 78,800,298 (GRCm39)	Q595R	probably benign	Het
Trak1	A	T	9: 121,289,478 (GRCm39)	I597F	probably damaging	Het
Trat1	T	C	16: 48,555,300 (GRCm39)	D144G	probably damaging	Het
Trim25	T	C	11: 88,890,358 (GRCm39)	V15A	probably benign	Het
Tulp1	A	C	17: 28,578,034 (GRCm39)		probably null	Het
Txndc15	T	A	13: 55,865,734 (GRCm39)	M66K	probably benign	Het
Vmn1r206	T	A	13: 22,804,775 (GRCm39)	N144I	probably damaging	Het
Wwc2	T	C	8: 48,353,796 (GRCm39)	T113A	probably benign	Het
Xpo5	A	C	17: 46,528,535 (GRCm39)	E313D	probably damaging	Het
Zfp790	C	T	7: 29,529,192 (GRCm39)	H626Y	probably benign	Het

Other mutations in Clic6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00421:Clic6	APN	16	92,296,196 (GRCm39)	missense	probably damaging	0.99
IGL02104:Clic6	APN	16	92,295,367 (GRCm39)	missense	possibly damaging	0.72
IGL02387:Clic6	APN	16	92,326,807 (GRCm39)	missense	probably damaging	1.00
IGL02437:Clic6	APN	16	92,327,817 (GRCm39)	missense	probably damaging	1.00
IGL02617:Clic6	APN	16	92,296,206 (GRCm39)	missense	probably benign	0.00
unsweetened	UTSW	16	92,327,697 (GRCm39)	missense	possibly damaging	0.79
R1544:Clic6	UTSW	16	92,288,961 (GRCm39)	intron	probably benign
R1677:Clic6	UTSW	16	92,324,972 (GRCm39)	missense	probably damaging	1.00
R2149:Clic6	UTSW	16	92,296,095 (GRCm39)	missense	probably benign	0.00
R3965:Clic6	UTSW	16	92,295,732 (GRCm39)	missense	probably benign	0.00
R4171:Clic6	UTSW	16	92,293,949 (GRCm39)	intron	probably benign
R4545:Clic6	UTSW	16	92,289,045 (GRCm39)	intron	probably benign
R4637:Clic6	UTSW	16	92,293,949 (GRCm39)	intron	probably benign
R4649:Clic6	UTSW	16	92,327,827 (GRCm39)	critical splice donor site	probably null
R5249:Clic6	UTSW	16	92,336,339 (GRCm39)	missense	probably damaging	1.00
R5486:Clic6	UTSW	16	92,326,740 (GRCm39)	splice site	probably null
R5582:Clic6	UTSW	16	92,296,342 (GRCm39)	missense	possibly damaging	0.93
R6140:Clic6	UTSW	16	92,336,380 (GRCm39)	missense	probably damaging	1.00
R6234:Clic6	UTSW	16	92,296,110 (GRCm39)	missense	probably benign
R6379:Clic6	UTSW	16	92,336,423 (GRCm39)	missense	probably damaging	1.00
R6593:Clic6	UTSW	16	92,325,005 (GRCm39)	missense	possibly damaging	0.82
R7890:Clic6	UTSW	16	92,296,275 (GRCm39)	missense	probably benign	0.41
R8794:Clic6	UTSW	16	92,324,987 (GRCm39)	missense	possibly damaging	0.91
R8937:Clic6	UTSW	16	92,296,245 (GRCm39)	missense	probably damaging	0.98
R9450:Clic6	UTSW	16	92,327,644 (GRCm39)	missense	possibly damaging	0.95
R9502:Clic6	UTSW	16	92,295,588 (GRCm39)	missense	probably damaging	1.00
RF012:Clic6	UTSW	16	92,327,697 (GRCm39)	missense	possibly damaging	0.79
X0058:Clic6	UTSW	16	92,295,595 (GRCm39)	missense	probably benign
Z1176:Clic6	UTSW	16	92,295,783 (GRCm39)	missense	probably benign	0.26
Z1177:Clic6	UTSW	16	92,296,027 (GRCm39)	missense	probably benign	0.08

Predicted Primers

PCR Primer
(F):5'- ACGAGCATCATCCCTGTATCAC -3'
(R):5'- CGCATGCTTGTATACATGAAAGG -3'

Sequencing Primer
(F):5'- CCTGTCATAGACCCTGAGTTAAATGG -3'
(R):5'- CATGCTTGTATACATGAAAGGGTGTG -3'

Posted On

2016-06-21