Mutagenetix > Incidental Mutation

Incidental Mutation 'R5985:Vmn2r25'

481598

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r25

Ensembl Gene

ENSMUSG00000094672

Gene Name

vomeronasal 2, receptor 25

Synonyms

EG545874

MMRRC Submission

044165-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.119) question?

Stock #

R5985 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

123799773-123830149 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 123800587 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 585 (V585A)

Ref Sequence

ENSEMBL: ENSMUSP00000124342 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000162046]

AlphaFold

W4VSP2

Predicted Effect

probably benign
Transcript: ENSMUST00000162046
AA Change: V585A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000124342
Gene: ENSMUSG00000094672
AA Change: V585A

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:ANF_receptor	82	473	6e-31	PFAM
Pfam:NCD3G	519	572	5.8e-25	PFAM
Pfam:7tm_3	603	840	4.8e-55	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.7%
20x: 93.2%

Validation Efficiency

96% (47/49)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	A	C	11: 9,241,628 (GRCm39)	I1164L	probably benign	Het
Actn1	C	A	12: 80,215,169 (GRCm39)	G864V	probably damaging	Het
Adgrf1	T	C	17: 43,604,146 (GRCm39)	I34T	probably benign	Het
Ankrd10	T	A	8: 11,669,077 (GRCm39)	K225*	probably null	Het
Ankrd29	G	A	18: 12,412,832 (GRCm39)	A115V	probably damaging	Het
Armh3	A	T	19: 45,808,763 (GRCm39)	Y643N	probably damaging	Het
Atg2a	A	G	19: 6,304,667 (GRCm39)	T1175A	probably damaging	Het
Atp12a	A	G	14: 56,621,798 (GRCm39)	D781G	probably damaging	Het
B4galnt3	G	A	6: 120,187,119 (GRCm39)	P759S	probably damaging	Het
Card10	T	C	15: 78,675,411 (GRCm39)	I448V	probably benign	Het
Col15a1	T	C	4: 47,284,507 (GRCm39)	F821L	probably damaging	Het
Cpeb3	T	C	19: 37,064,952 (GRCm39)	Y498C	probably damaging	Het
Defb37	A	T	8: 19,036,347 (GRCm39)	C58S	probably damaging	Het
Faap20	T	C	4: 155,334,797 (GRCm39)		probably benign	Het
Frem1	C	T	4: 82,884,287 (GRCm39)	V1204I	probably benign	Het
Gal3st2	T	C	1: 93,801,335 (GRCm39)	V46A	possibly damaging	Het
Gan	C	T	8: 117,922,557 (GRCm39)	S430L	possibly damaging	Het
Gas2	T	A	7: 51,593,424 (GRCm39)	I168K	probably damaging	Het
Gli3	A	G	13: 15,898,140 (GRCm39)	D740G	probably damaging	Het
Gm3898	G	A	9: 43,741,329 (GRCm39)		noncoding transcript	Het
Gria4	T	C	9: 4,503,593 (GRCm39)	Q341R	probably damaging	Het
Herpud1	G	A	8: 95,117,422 (GRCm39)	R2Q	probably damaging	Het
Klf15	G	A	6: 90,443,703 (GRCm39)	G93R	possibly damaging	Het
Mtmr7	A	G	8: 41,004,873 (GRCm39)	F568L	probably benign	Het
Myod1	A	G	7: 46,027,222 (GRCm39)	Y229C	probably damaging	Het
Or12e14	A	G	2: 87,187,949 (GRCm39)	I54V	probably benign	Het
Or5l13	A	G	2: 87,779,665 (GRCm39)	M304T	probably benign	Het
Phf11b	A	G	14: 59,559,027 (GRCm39)	L235P	possibly damaging	Het
Pira1	C	A	7: 3,740,316 (GRCm39)	G302C	probably damaging	Het
Plekha6	G	C	1: 133,200,045 (GRCm39)	R208P	possibly damaging	Het
Prox1	A	T	1: 189,879,152 (GRCm39)	F675L	possibly damaging	Het
Rnf144a	C	T	12: 26,367,779 (GRCm39)	E176K	probably benign	Het
Safb2	T	C	17: 56,870,181 (GRCm39)	E965G	possibly damaging	Het
Sik3	A	G	9: 46,122,973 (GRCm39)	N874S	probably damaging	Het
Slitrk3	T	C	3: 72,958,233 (GRCm39)	I180V	probably damaging	Het
Speg	T	C	1: 75,383,328 (GRCm39)	V1141A	possibly damaging	Het
Spns1	G	A	7: 125,975,902 (GRCm39)	T84I	probably benign	Het
Syne2	C	G	12: 76,012,933 (GRCm39)	P2709R	probably damaging	Het
Terb1	A	T	8: 105,178,439 (GRCm39)	S662T	probably benign	Het
Terb1	A	G	8: 105,208,948 (GRCm39)	S377P	probably damaging	Het
Tph1	A	G	7: 46,303,205 (GRCm39)	Y258H	probably damaging	Het
Trip12	T	A	1: 84,703,492 (GRCm39)	E1881D	probably damaging	Het
Trpc7	A	G	13: 56,958,358 (GRCm39)	L412P	probably damaging	Het
Ttll13	C	T	7: 79,904,386 (GRCm39)	A337V	probably damaging	Het
Ugt2b1	T	C	5: 87,067,527 (GRCm39)	K344E	possibly damaging	Het
Vmn1r36	T	A	6: 66,693,855 (GRCm39)	I7F	probably benign	Het
Vmn2r14	A	T	5: 109,368,082 (GRCm39)	N303K	possibly damaging	Het
Zan	A	C	5: 137,444,299 (GRCm39)		probably null	Het
Zfp423	A	T	8: 88,508,774 (GRCm39)	N502K	possibly damaging	Het
Zfp473	C	T	7: 44,382,752 (GRCm39)	R526Q	probably damaging	Het

Other mutations in Vmn2r25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00087:Vmn2r25	APN	6	123,830,130 (GRCm39)	missense	probably benign	0.25
IGL01781:Vmn2r25	APN	6	123,816,324 (GRCm39)	missense	possibly damaging	0.48
IGL01843:Vmn2r25	APN	6	123,829,962 (GRCm39)	missense	possibly damaging	0.67
IGL02023:Vmn2r25	APN	6	123,816,388 (GRCm39)	missense	probably damaging	0.96
IGL02502:Vmn2r25	APN	6	123,816,392 (GRCm39)	missense	probably damaging	0.96
IGL02709:Vmn2r25	APN	6	123,816,723 (GRCm39)	missense	possibly damaging	0.50
IGL03053:Vmn2r25	APN	6	123,800,077 (GRCm39)	missense	probably damaging	1.00
PIT4468001:Vmn2r25	UTSW	6	123,816,557 (GRCm39)	missense	probably benign	0.00
PIT4812001:Vmn2r25	UTSW	6	123,800,447 (GRCm39)	missense	probably damaging	1.00
R0054:Vmn2r25	UTSW	6	123,829,984 (GRCm39)	missense	probably benign	0.00
R0312:Vmn2r25	UTSW	6	123,805,539 (GRCm39)	splice site	probably benign
R0366:Vmn2r25	UTSW	6	123,800,581 (GRCm39)	nonsense	probably null
R0390:Vmn2r25	UTSW	6	123,800,140 (GRCm39)	missense	probably damaging	1.00
R0466:Vmn2r25	UTSW	6	123,829,008 (GRCm39)	missense	probably benign	0.16
R0541:Vmn2r25	UTSW	6	123,816,786 (GRCm39)	missense	probably damaging	0.97
R0612:Vmn2r25	UTSW	6	123,816,481 (GRCm39)	missense	probably damaging	1.00
R0865:Vmn2r25	UTSW	6	123,829,976 (GRCm39)	missense	probably benign	0.09
R1219:Vmn2r25	UTSW	6	123,816,282 (GRCm39)	missense	probably benign	0.00
R1240:Vmn2r25	UTSW	6	123,828,864 (GRCm39)	missense	probably damaging	0.98
R1701:Vmn2r25	UTSW	6	123,828,754 (GRCm39)	splice site	probably null
R1780:Vmn2r25	UTSW	6	123,805,424 (GRCm39)	missense	probably damaging	1.00
R1809:Vmn2r25	UTSW	6	123,802,337 (GRCm39)	missense	probably benign	0.00
R1833:Vmn2r25	UTSW	6	123,816,643 (GRCm39)	missense	probably benign	0.01
R1964:Vmn2r25	UTSW	6	123,800,254 (GRCm39)	missense	possibly damaging	0.94
R2154:Vmn2r25	UTSW	6	123,816,805 (GRCm39)	missense	probably benign	0.01
R2164:Vmn2r25	UTSW	6	123,816,518 (GRCm39)	missense	possibly damaging	0.96
R3799:Vmn2r25	UTSW	6	123,830,143 (GRCm39)	missense	probably benign	0.12
R3836:Vmn2r25	UTSW	6	123,830,044 (GRCm39)	missense	probably damaging	1.00
R3946:Vmn2r25	UTSW	6	123,817,057 (GRCm39)	missense	probably damaging	0.97
R4282:Vmn2r25	UTSW	6	123,800,606 (GRCm39)	missense	probably damaging	1.00
R4367:Vmn2r25	UTSW	6	123,805,496 (GRCm39)	missense	probably damaging	1.00
R4438:Vmn2r25	UTSW	6	123,816,756 (GRCm39)	missense	probably benign	0.03
R4488:Vmn2r25	UTSW	6	123,799,819 (GRCm39)	missense	probably damaging	1.00
R4580:Vmn2r25	UTSW	6	123,799,982 (GRCm39)	missense	possibly damaging	0.46
R4631:Vmn2r25	UTSW	6	123,829,962 (GRCm39)	missense	possibly damaging	0.94
R4765:Vmn2r25	UTSW	6	123,800,182 (GRCm39)	missense	probably damaging	1.00
R4908:Vmn2r25	UTSW	6	123,805,406 (GRCm39)	missense	probably benign
R5207:Vmn2r25	UTSW	6	123,817,062 (GRCm39)	missense	probably damaging	1.00
R5254:Vmn2r25	UTSW	6	123,802,277 (GRCm39)	missense	probably damaging	1.00
R5444:Vmn2r25	UTSW	6	123,805,451 (GRCm39)	missense	probably benign	0.00
R5586:Vmn2r25	UTSW	6	123,802,255 (GRCm39)	missense	probably damaging	1.00
R5607:Vmn2r25	UTSW	6	123,805,318 (GRCm39)	missense	possibly damaging	0.49
R6046:Vmn2r25	UTSW	6	123,799,876 (GRCm39)	missense	probably damaging	1.00
R6057:Vmn2r25	UTSW	6	123,799,900 (GRCm39)	missense	possibly damaging	0.69
R6569:Vmn2r25	UTSW	6	123,828,941 (GRCm39)	missense	probably benign	0.01
R6826:Vmn2r25	UTSW	6	123,800,071 (GRCm39)	missense	probably damaging	1.00
R7054:Vmn2r25	UTSW	6	123,800,569 (GRCm39)	missense	probably damaging	1.00
R7120:Vmn2r25	UTSW	6	123,805,394 (GRCm39)	missense	possibly damaging	0.51
R7177:Vmn2r25	UTSW	6	123,816,882 (GRCm39)	missense	possibly damaging	0.94
R7287:Vmn2r25	UTSW	6	123,829,040 (GRCm39)	missense	possibly damaging	0.49
R7397:Vmn2r25	UTSW	6	123,800,498 (GRCm39)	missense	probably damaging	0.96
R7486:Vmn2r25	UTSW	6	123,800,101 (GRCm39)	missense	probably damaging	1.00
R7699:Vmn2r25	UTSW	6	123,816,882 (GRCm39)	missense	possibly damaging	0.94
R7700:Vmn2r25	UTSW	6	123,816,882 (GRCm39)	missense	possibly damaging	0.94
R7759:Vmn2r25	UTSW	6	123,800,339 (GRCm39)	missense	probably damaging	0.99
R7802:Vmn2r25	UTSW	6	123,828,791 (GRCm39)	missense	possibly damaging	0.88
R7850:Vmn2r25	UTSW	6	123,805,431 (GRCm39)	missense	probably damaging	1.00
R8064:Vmn2r25	UTSW	6	123,800,581 (GRCm39)	nonsense	probably null
R8170:Vmn2r25	UTSW	6	123,829,976 (GRCm39)	missense	probably benign	0.09
R8340:Vmn2r25	UTSW	6	123,829,972 (GRCm39)	missense	probably benign	0.01
R8346:Vmn2r25	UTSW	6	123,802,350 (GRCm39)	missense	probably benign	0.00
R8395:Vmn2r25	UTSW	6	123,799,982 (GRCm39)	missense	possibly damaging	0.81
R8889:Vmn2r25	UTSW	6	123,800,569 (GRCm39)	missense	probably damaging	1.00
R9094:Vmn2r25	UTSW	6	123,805,391 (GRCm39)	missense	probably benign	0.44
R9204:Vmn2r25	UTSW	6	123,830,092 (GRCm39)	missense	probably benign	0.00
R9253:Vmn2r25	UTSW	6	123,816,960 (GRCm39)	missense	probably damaging	0.98
R9392:Vmn2r25	UTSW	6	123,816,937 (GRCm39)	missense	probably benign
R9520:Vmn2r25	UTSW	6	123,830,066 (GRCm39)	nonsense	probably null
R9525:Vmn2r25	UTSW	6	123,800,164 (GRCm39)	missense	probably damaging	1.00
R9622:Vmn2r25	UTSW	6	123,816,579 (GRCm39)	missense	probably damaging	0.99
X0020:Vmn2r25	UTSW	6	123,816,359 (GRCm39)	missense	possibly damaging	0.95
Z1176:Vmn2r25	UTSW	6	123,799,856 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAAGTGACTGTTCTAGGTTGG -3'
(R):5'- CCTTGAGAACTCAACAATTGCTCTG -3'

Sequencing Primer
(F):5'- GTTGGCCAATGAATATTAGTGAGC -3'
(R):5'- TGCTCTGCATAAAATATATGTGCC -3'

Posted On

2017-06-26