Incidental Mutation 'R2366:Or5af1'
| ID |
246341 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or5af1
|
| Ensembl Gene |
ENSMUSG00000096806 |
| Gene Name |
olfactory receptor family 5 subfamily AF member 1 |
| Synonyms |
Olfr312, GA_x6K02T2NKPP-575829-574903, MOR222-4P |
| MMRRC Submission |
040347-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.323)
|
| Stock # |
R2366 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
58721982-58722908 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 58722039 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamine to Lysine
at position 20
(Q20K)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149697
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000078217]
[ENSMUST00000216407]
|
| AlphaFold |
Q7TRZ9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000078217
AA Change: Q20K
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000077344
Gene: ENSMUSG00000096806
AA Change: Q20K
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
306 |
5.5e-53 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
33 |
303 |
1.9e-8 |
PFAM |
|
Pfam:7tm_1
|
39 |
288 |
4.7e-19 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000216407
AA Change: Q20K
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| Meta Mutation Damage Score |
0.0782 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 94.8%
|
| Validation Efficiency |
100% (39/39) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 40 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A630091E08Rik |
G |
A |
7: 98,192,949 (GRCm39) |
|
noncoding transcript |
Het |
| Adamts5 |
C |
T |
16: 85,659,646 (GRCm39) |
G882D |
probably damaging |
Het |
| Arl6ip6 |
T |
C |
2: 53,082,379 (GRCm39) |
V82A |
probably benign |
Het |
| Brd10 |
A |
T |
19: 29,731,035 (GRCm39) |
I726N |
probably damaging |
Het |
| Cd38 |
T |
G |
5: 44,060,932 (GRCm39) |
|
probably benign |
Het |
| Cep250 |
G |
A |
2: 155,834,552 (GRCm39) |
R2159K |
probably damaging |
Het |
| Col6a6 |
C |
A |
9: 105,632,893 (GRCm39) |
G1457V |
probably damaging |
Het |
| Cyp2c69 |
T |
C |
19: 39,866,038 (GRCm39) |
N185S |
probably benign |
Het |
| Cyp2d12 |
T |
A |
15: 82,439,355 (GRCm39) |
L3Q |
probably damaging |
Het |
| Dnajc28 |
G |
A |
16: 91,413,755 (GRCm39) |
T187M |
probably damaging |
Het |
| Drc1 |
A |
G |
5: 30,523,894 (GRCm39) |
*754W |
probably null |
Het |
| Erbin |
G |
A |
13: 103,981,417 (GRCm39) |
H503Y |
probably damaging |
Het |
| F3 |
G |
A |
3: 121,526,194 (GRCm39) |
|
probably null |
Het |
| Gm10033 |
A |
T |
8: 69,826,232 (GRCm39) |
M112K |
unknown |
Het |
| Gps1 |
A |
C |
11: 120,678,945 (GRCm39) |
I404L |
probably damaging |
Het |
| Hc |
T |
C |
2: 34,903,648 (GRCm39) |
N1002S |
probably benign |
Het |
| Impg2 |
T |
C |
16: 56,080,236 (GRCm39) |
I571T |
probably benign |
Het |
| Knop1 |
C |
A |
7: 118,451,751 (GRCm39) |
V323F |
possibly damaging |
Het |
| Kntc1 |
C |
T |
5: 123,919,255 (GRCm39) |
L845F |
probably damaging |
Het |
| Lsm5 |
T |
C |
6: 56,680,003 (GRCm39) |
D53G |
probably damaging |
Het |
| Lzts1 |
T |
C |
8: 69,593,257 (GRCm39) |
|
probably null |
Het |
| Matr3 |
A |
T |
18: 35,721,448 (GRCm39) |
N473I |
probably damaging |
Het |
| Med1 |
A |
G |
11: 98,052,008 (GRCm39) |
V452A |
probably damaging |
Het |
| Napsa |
T |
A |
7: 44,231,909 (GRCm39) |
D44E |
probably damaging |
Het |
| Nbeal1 |
T |
C |
1: 60,290,511 (GRCm39) |
F1036S |
probably damaging |
Het |
| Ncapg2 |
G |
A |
12: 116,384,349 (GRCm39) |
W270* |
probably null |
Het |
| Nherf1 |
G |
A |
11: 115,054,454 (GRCm39) |
V35M |
probably benign |
Het |
| Pik3ca |
G |
A |
3: 32,516,943 (GRCm39) |
W1057* |
probably null |
Het |
| Pkd1l2 |
A |
T |
8: 117,770,056 (GRCm39) |
D1133E |
probably benign |
Het |
| Pramel39-ps |
T |
C |
5: 94,450,972 (GRCm39) |
K385E |
probably benign |
Het |
| Prox1 |
T |
A |
1: 189,894,079 (GRCm39) |
E122V |
probably damaging |
Het |
| Rest |
C |
A |
5: 77,416,034 (GRCm39) |
H83N |
probably benign |
Het |
| Rundc3a |
A |
G |
11: 102,288,491 (GRCm39) |
I68V |
probably damaging |
Het |
| Stx6 |
A |
T |
1: 155,077,706 (GRCm39) |
I238L |
probably benign |
Het |
| Ttn |
A |
T |
2: 76,641,587 (GRCm39) |
L5176Q |
possibly damaging |
Het |
| Ubqln3 |
C |
A |
7: 103,790,256 (GRCm39) |
Q611H |
probably damaging |
Het |
| Usp6nl |
T |
A |
2: 6,445,770 (GRCm39) |
H559Q |
probably benign |
Het |
| Vipr1 |
T |
G |
9: 121,494,250 (GRCm39) |
V277G |
probably benign |
Het |
| Zfp101 |
A |
T |
17: 33,599,972 (GRCm39) |
C595S |
probably benign |
Het |
| Zfp398 |
C |
T |
6: 47,840,143 (GRCm39) |
T124I |
possibly damaging |
Het |
|
| Other mutations in Or5af1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01897:Or5af1
|
APN |
11 |
58,722,465 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0442:Or5af1
|
UTSW |
11 |
58,722,257 (GRCm39) |
nonsense |
probably null |
|
|
R0540:Or5af1
|
UTSW |
11 |
58,722,798 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0607:Or5af1
|
UTSW |
11 |
58,722,798 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R3437:Or5af1
|
UTSW |
11 |
58,722,150 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4135:Or5af1
|
UTSW |
11 |
58,722,820 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4391:Or5af1
|
UTSW |
11 |
58,722,841 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5557:Or5af1
|
UTSW |
11 |
58,722,813 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5564:Or5af1
|
UTSW |
11 |
58,722,039 (GRCm39) |
nonsense |
probably null |
|
|
R5854:Or5af1
|
UTSW |
11 |
58,722,382 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6791:Or5af1
|
UTSW |
11 |
58,722,903 (GRCm39) |
missense |
probably benign |
|
|
R7336:Or5af1
|
UTSW |
11 |
58,722,750 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7344:Or5af1
|
UTSW |
11 |
58,722,308 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7397:Or5af1
|
UTSW |
11 |
58,722,115 (GRCm39) |
missense |
probably benign |
0.05 |
|
R8471:Or5af1
|
UTSW |
11 |
58,722,597 (GRCm39) |
missense |
probably benign |
0.10 |
|
R8731:Or5af1
|
UTSW |
11 |
58,722,268 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9009:Or5af1
|
UTSW |
11 |
58,722,280 (GRCm39) |
missense |
probably benign |
0.02 |
|
R9237:Or5af1
|
UTSW |
11 |
58,722,057 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R9492:Or5af1
|
UTSW |
11 |
58,722,610 (GRCm39) |
missense |
probably benign |
|
|
R9760:Or5af1
|
UTSW |
11 |
58,722,852 (GRCm39) |
missense |
probably damaging |
0.99 |
|
X0067:Or5af1
|
UTSW |
11 |
58,722,814 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGCCTCAATGAGTAAACATGGAC -3'
(R):5'- GCACACTCTTGATAGGAGATGACC -3'
Sequencing Primer
(F):5'- TGGACCTGTACACACATGTC -3'
(R):5'- CTCTTGATAGGAGATGACCCCTGAG -3'
|
| Posted On |
2014-10-30 |
Incidental Mutation