Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02314:Foxred1'

287947

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Foxred1

Ensembl Gene

ENSMUSG00000039048

Gene Name

FAD-dependent oxidoreductase domain containing 1

Synonyms

TEG-23, Tex23

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL02314

Quality Score

Status

Chromosome

Chromosomal Location

35115502-35122351 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 35117264 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 22 (I22N)

Ref Sequence

ENSEMBL: ENSMUSP00000115301 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043805] [ENSMUST00000127996] [ENSMUST00000135054] [ENSMUST00000138287] [ENSMUST00000138692] [ENSMUST00000139703] [ENSMUST00000151658] [ENSMUST00000154691] [ENSMUST00000142595]

AlphaFold

Q3TQB2

Predicted Effect

probably damaging
Transcript: ENSMUST00000043805
AA Change: I289N

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000038924
Gene: ENSMUSG00000039048
AA Change: I289N

Domain	Start	End	E-Value	Type
low complexity region	3	20	N/A	INTRINSIC
Pfam:DAO	65	462	2.8e-50	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000127996
AA Change: I289N

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000118037
Gene: ENSMUSG00000039048
AA Change: I289N

Domain	Start	End	E-Value	Type
low complexity region	3	20	N/A	INTRINSIC
Pfam:DAO	65	456	1.8e-62	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130072

Predicted Effect

probably damaging
Transcript: ENSMUST00000135054
AA Change: I22N

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000115301
Gene: ENSMUSG00000039048
AA Change: I22N

Domain	Start	End	E-Value	Type
Pfam:DAO	3	140	1.1e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000138287

Predicted Effect

probably benign
Transcript: ENSMUST00000138692

SMART Domains

Protein: ENSMUSP00000120556
Gene: ENSMUSG00000039048

Domain	Start	End	E-Value	Type
low complexity region	3	20	N/A	INTRINSIC
low complexity region	29	43	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000139703

SMART Domains

Protein: ENSMUSP00000122535
Gene: ENSMUSG00000039048

Domain	Start	End	E-Value	Type
low complexity region	3	20	N/A	INTRINSIC
Pfam:DAO	65	184	1.6e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151082

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140177

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143039

Predicted Effect

probably benign
Transcript: ENSMUST00000151658

SMART Domains

Protein: ENSMUSP00000120284
Gene: ENSMUSG00000039048

Domain	Start	End	E-Value	Type
low complexity region	3	20	N/A	INTRINSIC
Pfam:DAO	65	121	5.8e-9	PFAM
low complexity region	128	138	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216618

Predicted Effect

probably benign
Transcript: ENSMUST00000154691

SMART Domains

Protein: ENSMUSP00000123496
Gene: ENSMUSG00000039048

Domain	Start	End	E-Value	Type
low complexity region	3	20	N/A	INTRINSIC
low complexity region	29	43	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000142595

SMART Domains

Protein: ENSMUSP00000117147
Gene: ENSMUSG00000039048

Domain	Start	End	E-Value	Type
low complexity region	3	20	N/A	INTRINSIC
Pfam:DAO	65	187	3.4e-15	PFAM

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that contains a FAD-dependent oxidoreductase domain. The encoded protein is localized to the mitochondria and may function as a chaperone protein required for the function of mitochondrial complex I. Mutations in this gene are associated with mitochondrial complex I deficiency. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Dec 2010]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alg2	T	A	4: 47,472,143 (GRCm39)	K94*	probably null	Het
Axl	A	G	7: 25,486,345 (GRCm39)	F120L	possibly damaging	Het
Baz2b	A	G	2: 59,792,571 (GRCm39)	V519A	probably benign	Het
Cdk2	A	T	10: 128,539,595 (GRCm39)	I99N	probably damaging	Het
Ces1b	C	A	8: 93,791,524 (GRCm39)	W358C	possibly damaging	Het
Cimap1b	T	G	15: 89,262,372 (GRCm39)	K82N	probably damaging	Het
Clca3b	A	G	3: 144,533,903 (GRCm39)		probably benign	Het
Col6a4	T	G	9: 105,874,355 (GRCm39)	T2211P	probably damaging	Het
Cyp4f14	C	T	17: 33,125,265 (GRCm39)	E438K	probably benign	Het
Dpy19l4	T	A	4: 11,267,720 (GRCm39)	T407S	possibly damaging	Het
Dtx3	G	A	10: 127,026,828 (GRCm39)		probably benign	Het
Eif1ad14	T	A	12: 87,886,377 (GRCm39)	Y84F	probably benign	Het
Fat3	A	T	9: 15,881,134 (GRCm39)	L3246H	possibly damaging	Het
Fat4	A	T	3: 38,941,779 (GRCm39)	D224V	probably damaging	Het
Fndc9	A	T	11: 46,129,122 (GRCm39)	I214F	probably benign	Het
Gkn1	T	C	6: 87,326,103 (GRCm39)	D29G	probably benign	Het
Gng11	T	A	6: 4,004,317 (GRCm39)	M1K	probably null	Het
Hdac7	T	C	15: 97,706,885 (GRCm39)	D237G	probably damaging	Het
Hgf	A	G	5: 16,777,600 (GRCm39)	Y199C	probably damaging	Het
Hgfac	A	T	5: 35,198,941 (GRCm39)	M1L	probably benign	Het
Hsd17b6	T	C	10: 127,833,777 (GRCm39)	T35A	probably damaging	Het
Htr3a	G	A	9: 48,815,927 (GRCm39)	P170L	probably damaging	Het
Ighv12-3	A	G	12: 114,330,421 (GRCm39)	S25P	probably damaging	Het
Jph2	A	T	2: 163,239,273 (GRCm39)	N58K	probably damaging	Het
Lama5	A	G	2: 179,836,275 (GRCm39)		probably benign	Het
Lpin3	T	A	2: 160,740,638 (GRCm39)	Y394*	probably null	Het
Macf1	G	T	4: 123,338,630 (GRCm39)	T2248K	probably damaging	Het
Map3k2	A	G	18: 32,351,553 (GRCm39)		probably benign	Het
Map4k5	G	A	12: 69,865,213 (GRCm39)	P524S	probably benign	Het
Mcf2l	C	T	8: 13,051,851 (GRCm39)	S359L	probably damaging	Het
Mdh1b	C	T	1: 63,750,273 (GRCm39)		probably null	Het
Mfhas1	G	A	8: 36,055,927 (GRCm39)	R134H	probably damaging	Het
Mogs	A	G	6: 83,095,036 (GRCm39)	T618A	probably benign	Het
Mybpc2	T	A	7: 44,171,812 (GRCm39)	Q39H	possibly damaging	Het
Myoc	C	T	1: 162,466,917 (GRCm39)	R29W	probably damaging	Het
Nae1	A	G	8: 105,252,938 (GRCm39)	M162T	probably damaging	Het
Nfatc3	A	G	8: 106,805,532 (GRCm39)	I126V	probably benign	Het
Nxnl2	C	A	13: 51,325,565 (GRCm39)	F69L	probably benign	Het
Oca2	T	A	7: 56,006,899 (GRCm39)	I662N	probably benign	Het
Or52b3	A	T	7: 102,204,318 (GRCm39)	I276F	probably damaging	Het
Or5w8	A	G	2: 87,688,400 (GRCm39)	N294D	probably damaging	Het
Or7c70	A	T	10: 78,683,099 (GRCm39)	S217T	probably damaging	Het
Or7e176	A	T	9: 20,171,774 (GRCm39)	I213L	probably benign	Het
Pcdhb14	G	A	18: 37,583,248 (GRCm39)	E785K	probably benign	Het
Plb1	A	C	5: 32,438,492 (GRCm39)	Y209S	possibly damaging	Het
Pramel24	T	C	4: 143,455,012 (GRCm39)	S437P	probably benign	Het
Rab44	C	A	17: 29,358,327 (GRCm39)	Q172K	probably benign	Het
Rnf214	A	T	9: 45,811,105 (GRCm39)	V186E	probably benign	Het
Rps6ka1	C	A	4: 133,578,065 (GRCm39)	G522W	probably damaging	Het
Samhd1	G	T	2: 156,976,948 (GRCm39)	T21K	probably damaging	Het
Scly	A	G	1: 91,246,763 (GRCm39)	Y358C	probably benign	Het
Sfxn2	A	G	19: 46,571,026 (GRCm39)	N29D	possibly damaging	Het
Shank2	A	G	7: 143,965,008 (GRCm39)	D1451G	probably benign	Het
Slc44a5	G	A	3: 153,962,156 (GRCm39)	S363N	probably damaging	Het
Smg1	A	G	7: 117,753,932 (GRCm39)		probably benign	Het
Tas1r3	A	T	4: 155,945,119 (GRCm39)	C701S	probably damaging	Het
Tmem87a	A	G	2: 120,234,502 (GRCm39)	S14P	possibly damaging	Het
Trmt6	G	A	2: 132,647,378 (GRCm39)	A486V	probably benign	Het
Ttn	G	A	2: 76,727,091 (GRCm39)	R1602*	probably null	Het
Ush2a	A	G	1: 188,365,826 (GRCm39)	M2227V	probably benign	Het
Vmn2r96	A	T	17: 18,804,221 (GRCm39)	Q490H	probably benign	Het
Wdr19	G	T	5: 65,414,463 (GRCm39)	A1279S	probably benign	Het
Zbtb7c	G	A	18: 76,278,937 (GRCm39)	R465H	probably damaging	Het
Zfp473	T	C	7: 44,383,353 (GRCm39)	S326G	probably benign	Het

Other mutations in Foxred1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02163:Foxred1	APN	9	35,117,192 (GRCm39)	missense	probably damaging	1.00
IGL02379:Foxred1	APN	9	35,121,282 (GRCm39)	missense	probably benign	0.44
IGL02558:Foxred1	APN	9	35,121,429 (GRCm39)	missense	probably damaging	1.00
PIT4494001:Foxred1	UTSW	9	35,120,355 (GRCm39)	missense	possibly damaging	0.95
R0220:Foxred1	UTSW	9	35,120,749 (GRCm39)	missense	probably damaging	1.00
R0605:Foxred1	UTSW	9	35,116,178 (GRCm39)	missense	possibly damaging	0.68
R0763:Foxred1	UTSW	9	35,118,769 (GRCm39)	splice site	probably null
R1136:Foxred1	UTSW	9	35,116,333 (GRCm39)	missense	probably benign	0.25
R1449:Foxred1	UTSW	9	35,120,738 (GRCm39)	missense	probably damaging	1.00
R1757:Foxred1	UTSW	9	35,122,130 (GRCm39)	missense	probably benign	0.16
R2157:Foxred1	UTSW	9	35,116,659 (GRCm39)	missense	probably damaging	1.00
R2434:Foxred1	UTSW	9	35,116,954 (GRCm39)	missense	probably damaging	0.99
R3713:Foxred1	UTSW	9	35,122,186 (GRCm39)	start codon destroyed	probably null
R4012:Foxred1	UTSW	9	35,117,571 (GRCm39)	missense	possibly damaging	0.48
R4666:Foxred1	UTSW	9	35,122,151 (GRCm39)	intron	probably benign
R4934:Foxred1	UTSW	9	35,121,210 (GRCm39)	intron	probably benign
R5488:Foxred1	UTSW	9	35,121,266 (GRCm39)	missense	probably damaging	1.00
R5489:Foxred1	UTSW	9	35,121,266 (GRCm39)	missense	probably damaging	1.00
R5828:Foxred1	UTSW	9	35,121,492 (GRCm39)	intron	probably benign
R5840:Foxred1	UTSW	9	35,121,435 (GRCm39)	missense	probably damaging	0.99
R7037:Foxred1	UTSW	9	35,118,844 (GRCm39)	missense	probably benign	0.04
R7599:Foxred1	UTSW	9	35,116,932 (GRCm39)	missense	probably damaging	1.00
R9722:Foxred1	UTSW	9	35,117,300 (GRCm39)	missense	possibly damaging	0.95
R9795:Foxred1	UTSW	9	35,122,152 (GRCm39)	frame shift	probably null

Posted On

2015-04-16