Mutagenetix > Incidental Mutation

Incidental Mutation 'R7851:Pamr1'

606913

Institutional Source

Beutler Lab

Gene Symbol

Pamr1

Ensembl Gene

ENSMUSG00000027188

Gene Name

peptidase domain containing associated with muscle regeneration 1

Synonyms

E430002G05Rik, RAMP

MMRRC Submission

045904-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.087) question?

Stock #

R7851 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

102380357-102473386 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 102416945 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 86 (T86S)

Ref Sequence

ENSEMBL: ENSMUSP00000028612 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028612]

AlphaFold

Q8BU25

Predicted Effect

probably benign
Transcript: ENSMUST00000028612
AA Change: T86S

PolyPhen 2 Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000028612
Gene: ENSMUSG00000027188
AA Change: T86S

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
EGF	84	126	1.18e1	SMART
CUB	128	236	1.07e-33	SMART
EGF	238	272	4.12e-7	SMART
CCP	280	342	1.3e-9	SMART
CCP	389	442	6.7e-3	SMART
Tryp_SPc	444	715	1.02e-34	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (62/62)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aarsd1	T	A	11: 101,300,838 (GRCm39)		probably null	Het
Abcc3	A	T	11: 94,250,486 (GRCm39)	L905*	probably null	Het
Adamts9	T	G	6: 92,885,687 (GRCm39)	D401A	probably damaging	Het
Ankmy1	T	C	1: 92,799,444 (GRCm39)	K918E	probably damaging	Het
Arfgef3	T	C	10: 18,468,034 (GRCm39)	N1722S	probably damaging	Het
Arhgef18	A	G	8: 3,498,409 (GRCm39)	I481V	possibly damaging	Het
Asxl3	T	C	18: 22,650,279 (GRCm39)	I756T	possibly damaging	Het
Atp6v0b	A	G	4: 117,743,062 (GRCm39)	F49S	probably damaging	Het
Baz2b	C	A	2: 59,767,060 (GRCm39)	E107D	probably damaging	Het
Calcoco2	GGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCC	GGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCC	11: 95,990,808 (GRCm39)		probably benign	Het
Cd2ap	A	G	17: 43,135,363 (GRCm39)		probably null	Het
Cnn3	T	A	3: 121,250,992 (GRCm39)	Y304N	possibly damaging	Het
Cnot2	G	A	10: 116,373,337 (GRCm39)	S22L	possibly damaging	Het
Coq6	A	T	12: 84,418,929 (GRCm39)	H311L	possibly damaging	Het
Csf2rb2	T	C	15: 78,173,137 (GRCm39)	N350S	probably benign	Het
Dhrs9	T	A	2: 69,231,600 (GRCm39)	N253K	probably benign	Het
Dok7	T	A	5: 35,214,280 (GRCm39)	M1K	probably null	Het
Eogt	T	A	6: 97,097,162 (GRCm39)	E313D	probably benign	Het
Etl4	T	C	2: 20,748,951 (GRCm39)	S430P	probably damaging	Het
Gfod2	T	A	8: 106,454,762 (GRCm39)	E39D	probably benign	Het
Gfral	T	C	9: 76,112,737 (GRCm39)	N65D	probably benign	Het
Gsdmc4	A	T	15: 63,774,595 (GRCm39)	L62*	probably null	Het
Gyg1	T	G	3: 20,176,911 (GRCm39)	M360L	probably benign	Het
Hsp90ab1	A	T	17: 45,881,378 (GRCm39)	S255T	probably benign	Het
Hyal6	T	A	6: 24,734,497 (GRCm39)	D143E	probably benign	Het
Ipp	C	T	4: 116,372,672 (GRCm39)	Q234*	probably null	Het
Ism1	A	T	2: 139,599,185 (GRCm39)	D386V	probably damaging	Het
Jrkl	T	C	9: 13,244,354 (GRCm39)	T436A	probably benign	Het
Mup3	A	C	4: 62,003,494 (GRCm39)	I125S	possibly damaging	Het
Myh6	T	A	14: 55,190,508 (GRCm39)	E1003V	possibly damaging	Het
Neb	T	A	2: 52,043,076 (GRCm39)	I6785F	probably benign	Het
Odad4	C	T	11: 100,436,655 (GRCm39)	T10I	probably damaging	Het
Or11g24	A	G	14: 50,662,827 (GRCm39)	T284A	probably damaging	Het
Or11h4b	A	G	14: 50,918,915 (GRCm39)	Y59H	probably damaging	Het
Or1j4	T	A	2: 36,740,428 (GRCm39)	Y123*	probably null	Het
Or2w25	T	C	11: 59,504,789 (GRCm39)	V333A	probably benign	Het
Or6c5c	G	T	10: 129,299,429 (GRCm39)	V295L	probably benign	Het
Pced1a	A	T	2: 130,264,236 (GRCm39)	M168K	probably damaging	Het
Pigs	T	C	11: 78,227,613 (GRCm39)	L259P	probably damaging	Het
Plch1	T	C	3: 63,605,855 (GRCm39)	S1350G	probably damaging	Het
Prickle1	G	A	15: 93,398,440 (GRCm39)	T796I	possibly damaging	Het
Ptcd3	T	C	6: 71,879,843 (GRCm39)	I138M	probably damaging	Het
Ptprs	T	C	17: 56,732,482 (GRCm39)	E958G	probably benign	Het
Rcn3	A	T	7: 44,736,236 (GRCm39)	D157E	probably benign	Het
Rft1	T	C	14: 30,412,540 (GRCm39)	S534P	probably benign	Het
Ryr3	T	C	2: 112,508,862 (GRCm39)	T3371A	probably benign	Het
Scn10a	A	T	9: 119,446,828 (GRCm39)	V1399D	probably damaging	Het
Sec61a1	T	C	6: 88,489,147 (GRCm39)	T185A	probably benign	Het
Sgsm3	G	A	15: 80,894,954 (GRCm39)	V607M	probably damaging	Het
Smurf2	T	C	11: 106,721,752 (GRCm39)	Y581C	probably damaging	Het
Snx8	C	A	5: 140,343,914 (GRCm39)	V101L	probably damaging	Het
Sp100	A	T	1: 85,634,647 (GRCm39)	K180M	probably benign	Het
Spire2	T	A	8: 124,083,438 (GRCm39)		probably null	Het
St6galnac2	A	G	11: 116,576,764 (GRCm39)	S86P	probably benign	Het
Sybu	G	A	15: 44,609,852 (GRCm39)	Q139*	probably null	Het
Tas2r114	T	A	6: 131,666,888 (GRCm39)	I47F	probably damaging	Het
Tcf21	T	C	10: 22,695,747 (GRCm39)	D19G	probably benign	Het
Terb2	T	C	2: 122,016,794 (GRCm39)	F9L	probably damaging	Het
Tlr1	T	C	5: 65,082,307 (GRCm39)	T757A	possibly damaging	Het
Tmco1	C	T	1: 167,136,255 (GRCm39)		probably benign	Het
Tshz3	T	C	7: 36,471,014 (GRCm39)	F1001S	probably damaging	Het
Vmn2r62	G	A	7: 42,438,539 (GRCm39)	T99I	probably benign	Het
Wdr7	A	T	18: 63,853,398 (GRCm39)	T33S	probably benign	Het

Other mutations in Pamr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00503:Pamr1	APN	2	102,472,617 (GRCm39)	missense	possibly damaging	0.80
IGL00741:Pamr1	APN	2	102,416,966 (GRCm39)	missense	possibly damaging	0.62
IGL00928:Pamr1	APN	2	102,469,686 (GRCm39)	missense	probably benign	0.01
IGL01328:Pamr1	APN	2	102,472,482 (GRCm39)	missense	probably benign	0.00
IGL02621:Pamr1	APN	2	102,464,688 (GRCm39)	missense	probably benign	0.03
IGL02732:Pamr1	APN	2	102,472,486 (GRCm39)	missense	probably benign	0.03
R0020:Pamr1	UTSW	2	102,472,423 (GRCm39)	missense	probably benign	0.19
R0743:Pamr1	UTSW	2	102,440,252 (GRCm39)	missense	probably damaging	1.00
R1068:Pamr1	UTSW	2	102,472,590 (GRCm39)	missense	probably damaging	1.00
R1127:Pamr1	UTSW	2	102,469,698 (GRCm39)	missense	possibly damaging	0.81
R1711:Pamr1	UTSW	2	102,471,197 (GRCm39)	missense	probably benign	0.28
R1912:Pamr1	UTSW	2	102,472,645 (GRCm39)	missense	probably damaging	1.00
R1926:Pamr1	UTSW	2	102,471,342 (GRCm39)	splice site	probably null
R1937:Pamr1	UTSW	2	102,472,617 (GRCm39)	missense	possibly damaging	0.80
R2021:Pamr1	UTSW	2	102,464,880 (GRCm39)	missense	probably benign	0.00
R2023:Pamr1	UTSW	2	102,464,880 (GRCm39)	missense	probably benign	0.00
R4718:Pamr1	UTSW	2	102,472,681 (GRCm39)	missense	probably damaging	1.00
R4934:Pamr1	UTSW	2	102,472,549 (GRCm39)	missense	probably benign	0.21
R5268:Pamr1	UTSW	2	102,417,029 (GRCm39)	missense	probably damaging	0.98
R5450:Pamr1	UTSW	2	102,469,662 (GRCm39)	missense	probably damaging	0.98
R5864:Pamr1	UTSW	2	102,464,693 (GRCm39)	missense	possibly damaging	0.91
R6112:Pamr1	UTSW	2	102,441,953 (GRCm39)	missense	probably damaging	1.00
R6286:Pamr1	UTSW	2	102,471,293 (GRCm39)	nonsense	probably null
R6327:Pamr1	UTSW	2	102,472,519 (GRCm39)	missense	probably damaging	1.00
R6831:Pamr1	UTSW	2	102,445,276 (GRCm39)	missense	probably damaging	0.97
R6834:Pamr1	UTSW	2	102,445,276 (GRCm39)	missense	probably damaging	0.97
R6980:Pamr1	UTSW	2	102,472,549 (GRCm39)	missense	probably benign	0.21
R7000:Pamr1	UTSW	2	102,441,968 (GRCm39)	missense	probably damaging	1.00
R7073:Pamr1	UTSW	2	102,471,280 (GRCm39)	missense	probably benign	0.00
R7255:Pamr1	UTSW	2	102,441,929 (GRCm39)	missense	probably damaging	1.00
R7357:Pamr1	UTSW	2	102,417,049 (GRCm39)	nonsense	probably null
R8745:Pamr1	UTSW	2	102,441,924 (GRCm39)	missense	probably damaging	1.00
R8766:Pamr1	UTSW	2	102,380,538 (GRCm39)	start codon destroyed	probably null	0.90
R8817:Pamr1	UTSW	2	102,464,766 (GRCm39)	missense	probably benign	0.05
R8964:Pamr1	UTSW	2	102,464,811 (GRCm39)	missense	possibly damaging	0.65
R8977:Pamr1	UTSW	2	102,441,963 (GRCm39)	missense	probably damaging	0.96
R9081:Pamr1	UTSW	2	102,441,933 (GRCm39)	missense	probably damaging	1.00
R9139:Pamr1	UTSW	2	102,464,766 (GRCm39)	missense	probably benign	0.19
X0067:Pamr1	UTSW	2	102,469,680 (GRCm39)	nonsense	probably null
Z1088:Pamr1	UTSW	2	102,464,791 (GRCm39)	missense	possibly damaging	0.84

Predicted Primers

PCR Primer
(F):5'- AATCTGGGTGAACCTCCTGC -3'
(R):5'- TTCCAAAACTGAGATTCCAACAAGG -3'

Sequencing Primer
(F):5'- CTCCTTGGTATGAGCAGGTTCAC -3'
(R):5'- CTAAGCTGAGACTTGGATGCTAAACC -3'

Posted On

2019-12-20