Mutagenetix > Incidental Mutation

Incidental Mutation 'R7719:Cluap1'

628323

Institutional Source

Beutler Lab

Gene Symbol

Cluap1

Ensembl Gene

ENSMUSG00000014232

Gene Name

clusterin associated protein 1

Synonyms

2310030D15Rik, 2610111M03Rik

MMRRC Submission

045776-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7719 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

3726665-3759011 bp(+) (GRCm39)

Type of Mutation

splice site (450 bp from exon)

DNA Base Change (assembly)

C to T at 3727467 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000119490 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006138] [ENSMUST00000006139] [ENSMUST00000040881] [ENSMUST00000115859] [ENSMUST00000115860] [ENSMUST00000123235] [ENSMUST00000124849] [ENSMUST00000139294] [ENSMUST00000145150] [ENSMUST00000176233] [ENSMUST00000177221] [ENSMUST00000177323] [ENSMUST00000186375]

AlphaFold

Q8R3P7

Predicted Effect

probably benign
Transcript: ENSMUST00000006138

SMART Domains

Protein: ENSMUSP00000006138
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_7	50	157	4.2e-11	PFAM
Pfam:Acetyltransf_1	57	156	4.2e-15	PFAM
Pfam:FR47	77	164	8.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000006139

SMART Domains

Protein: ENSMUSP00000006139
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	16	139	7.3e-70	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000040881

SMART Domains

Protein: ENSMUSP00000043397
Gene: ENSMUSG00000014232

Domain	Start	End	E-Value	Type
Pfam:Cluap1	14	283	2.5e-121	PFAM
low complexity region	297	307	N/A	INTRINSIC
low complexity region	310	330	N/A	INTRINSIC
low complexity region	360	388	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000115859

SMART Domains

Protein: ENSMUSP00000111525
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	2	162	4.7e-89	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115860

SMART Domains

Protein: ENSMUSP00000111526
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_7	50	157	4.2e-11	PFAM
Pfam:Acetyltransf_1	57	156	4.2e-15	PFAM
Pfam:FR47	77	164	8.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000123235

SMART Domains

Protein: ENSMUSP00000135233
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	7	67	1.5e-38	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000124849

SMART Domains

Protein: ENSMUSP00000119490
Gene: ENSMUSG00000014232

Domain	Start	End	E-Value	Type
Pfam:Cluap1	3	206	8.7e-93	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000139294

Predicted Effect

probably benign
Transcript: ENSMUST00000145150

SMART Domains

Protein: ENSMUSP00000116855
Gene: ENSMUSG00000014232

Domain	Start	End	E-Value	Type
Pfam:Cluap1	3	188	9.9e-86	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176233

SMART Domains

Protein: ENSMUSP00000135826
Gene: ENSMUSG00000093575

Domain	Start	End	E-Value	Type
Pfam:Cluap1	119	282	2.8e-76	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000177221

SMART Domains

Protein: ENSMUSP00000134800
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	13	144	7.2e-75	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000177323

SMART Domains

Protein: ENSMUSP00000135766
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	6	166	1.5e-93	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000186375

SMART Domains

Protein: ENSMUSP00000140031
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_7	50	157	4.2e-11	PFAM
Pfam:Acetyltransf_1	57	156	4.2e-15	PFAM
Pfam:FR47	77	164	8.2e-9	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

99% (67/68)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a single coiled-coil region. Alternative splicing results in multiple transcript variants and protein isoforms. [provided by RefSeq, Jul 2012]
PHENOTYPE: Homozygous mutant mice exhibit mid-gestation lethality, failure of embryonic turning, enlarged pericardial sacs, neural tube defects and lack primary cilia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acbd6	T	A	1: 155,562,758 (GRCm39)	L253H	probably damaging	Het
Adam11	T	C	11: 102,663,303 (GRCm39)	V238A	probably benign	Het
Amer3	A	T	1: 34,628,083 (GRCm39)	H774L	possibly damaging	Het
Anapc15	T	C	7: 101,550,236 (GRCm39)	L150P	unknown	Het
Ano8	G	T	8: 71,935,784 (GRCm39)	T278K	possibly damaging	Het
Atg16l2	T	C	7: 100,939,074 (GRCm39)	K618E	probably damaging	Het
Casz1	C	T	4: 149,028,981 (GRCm39)	S1142L	probably damaging	Het
Ccdc30	T	A	4: 119,190,813 (GRCm39)	E471D	probably damaging	Het
Cks1b	T	C	3: 89,323,635 (GRCm39)	N45D	probably benign	Het
Clasrp	T	C	7: 19,321,769 (GRCm39)	T296A	probably damaging	Het
Cntn5	T	A	9: 9,704,903 (GRCm39)	D632V	probably damaging	Het
Cntnap3	G	A	13: 64,920,591 (GRCm39)	Q593*	probably null	Het
Col18a1	A	T	10: 76,913,846 (GRCm39)	I457K	probably benign	Het
Crybb3	G	T	5: 113,223,834 (GRCm39)	Q192K	probably damaging	Het
Cyb561d2	C	T	9: 107,417,383 (GRCm39)	A123T	probably benign	Het
Cyp2b13	C	T	7: 25,795,095 (GRCm39)	A442V	probably damaging	Het
Cyp2j9	G	A	4: 96,457,079 (GRCm39)	T464I	probably benign	Het
Cyp4a29	G	A	4: 115,108,137 (GRCm39)	G320R	possibly damaging	Het
Dbp	T	C	7: 45,359,174 (GRCm39)	I283T	probably damaging	Het
Efcab3	T	C	11: 105,002,674 (GRCm39)	I303T	probably benign	Het
Efcab8	T	A	2: 153,629,665 (GRCm39)	V166D		Het
Efhc1	A	T	1: 21,049,744 (GRCm39)	I535F	probably benign	Het
Epb41l3	A	G	17: 69,560,409 (GRCm39)	I319V	possibly damaging	Het
Ewsr1	T	C	11: 5,035,900 (GRCm39)	T193A	unknown	Het
Fam227a	T	C	15: 79,504,913 (GRCm39)	N510S	possibly damaging	Het
Frmpd1	T	C	4: 45,284,841 (GRCm39)	C1221R	possibly damaging	Het
Gm6741	A	C	17: 91,544,472 (GRCm39)	E78D	probably benign	Het
Gpam	C	T	19: 55,070,102 (GRCm39)	V385I	probably damaging	Het
Gpr55	A	G	1: 85,869,059 (GRCm39)	V174A	probably benign	Het
Gsdmc	T	C	15: 63,650,813 (GRCm39)		probably null	Het
Hmcn1	T	A	1: 150,441,080 (GRCm39)	D5509V	possibly damaging	Het
Hoxc13	A	T	15: 102,830,293 (GRCm39)	Q224L	possibly damaging	Het
Hunk	A	G	16: 90,293,554 (GRCm39)	D612G	probably benign	Het
Igsf3	G	A	3: 101,342,857 (GRCm39)	R478H	probably damaging	Het
Itgb5	A	G	16: 33,740,486 (GRCm39)	Q532R	probably benign	Het
Jph1	T	C	1: 17,162,215 (GRCm39)	Y149C	probably damaging	Het
Lztfl1	T	C	9: 123,544,395 (GRCm39)	D33G	probably null	Het
Mex3c	G	T	18: 73,723,061 (GRCm39)	A385S	possibly damaging	Het
Myo5a	T	A	9: 75,051,366 (GRCm39)	S320T	probably benign	Het
Nsun4	A	T	4: 115,909,617 (GRCm39)	N314K	possibly damaging	Het
Omg	T	A	11: 79,393,059 (GRCm39)	E266D	probably benign	Het
Or4b12	A	T	2: 90,096,603 (GRCm39)	M57K	probably damaging	Het
Paqr9	T	A	9: 95,442,829 (GRCm39)	V273E	possibly damaging	Het
Phkg1	G	A	5: 129,902,699 (GRCm39)		probably benign	Het
Plekhm3	T	C	1: 64,960,901 (GRCm39)	K452E	probably benign	Het
Plpbp	T	A	8: 27,535,974 (GRCm39)	I86N		Het
Prl2c1	G	T	13: 28,035,780 (GRCm39)	A51S	probably damaging	Het
Prmt8	A	T	6: 127,706,466 (GRCm39)	H108Q	probably damaging	Het
Prrc2b	T	A	2: 32,107,280 (GRCm39)	C1614*	probably null	Het
Ptpdc1	A	G	13: 48,739,766 (GRCm39)	V555A	probably benign	Het
Rassf9	A	G	10: 102,381,461 (GRCm39)	D281G	probably benign	Het
Resf1	T	C	6: 149,228,853 (GRCm39)	I633T	probably benign	Het
Rmnd1	T	C	10: 4,377,496 (GRCm39)	D61G	probably benign	Het
Rsf1	GGCG	GGCGACGGCCGCG	7: 97,229,113 (GRCm39)		probably benign	Het
Ryr2	A	G	13: 11,745,229 (GRCm39)	S2055P	possibly damaging	Het
Six5	G	A	7: 18,830,803 (GRCm39)	A477T	probably damaging	Het
Speg	A	G	1: 75,352,469 (GRCm39)	E129G	probably damaging	Het
Stard10	C	T	7: 100,995,320 (GRCm39)	A78V	not run	Het
Stard3	T	C	11: 98,266,502 (GRCm39)	V127A	probably benign	Het
Svep1	G	A	4: 58,068,523 (GRCm39)	P3088S	probably damaging	Het
Tbck	A	G	3: 132,440,489 (GRCm39)	D508G	probably damaging	Het
Tgm2	T	A	2: 157,985,038 (GRCm39)	T23S	probably damaging	Het
Ttll10	G	T	4: 156,131,665 (GRCm39)		probably null	Het
Vcan	A	T	13: 89,852,738 (GRCm39)	S741T	probably damaging	Het
Vmn2r13	T	C	5: 109,319,618 (GRCm39)	N454S	probably benign	Het
Vmn2r45	T	A	7: 8,486,460 (GRCm39)	E276V	probably damaging	Het
Wnt8a	T	C	18: 34,680,588 (GRCm39)	W318R	probably damaging	Het
Zer1	A	T	2: 30,001,243 (GRCm39)	L87H	probably damaging	Het
Zfp518a	T	A	19: 40,901,212 (GRCm39)	N380K	probably benign	Het
Zfp90	T	C	8: 107,145,725 (GRCm39)	V19A	probably damaging	Het
Zkscan5	A	C	5: 145,157,676 (GRCm39)	H726P	probably damaging	Het

Other mutations in Cluap1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0304:Cluap1	UTSW	16	3,747,782 (GRCm39)	unclassified	probably benign
R0545:Cluap1	UTSW	16	3,751,636 (GRCm39)	missense	probably damaging	0.96
R1459:Cluap1	UTSW	16	3,755,453 (GRCm39)	missense	probably damaging	1.00
R1511:Cluap1	UTSW	16	3,737,422 (GRCm39)	missense	probably benign
R2136:Cluap1	UTSW	16	3,751,636 (GRCm39)	missense	probably damaging	0.96
R3027:Cluap1	UTSW	16	3,729,396 (GRCm39)	nonsense	probably null
R3926:Cluap1	UTSW	16	3,729,398 (GRCm39)	missense	probably damaging	0.99
R4386:Cluap1	UTSW	16	3,751,586 (GRCm39)	missense	possibly damaging	0.70
R4587:Cluap1	UTSW	16	3,751,680 (GRCm39)	critical splice donor site	probably null
R5587:Cluap1	UTSW	16	3,733,348 (GRCm39)	missense	probably damaging	1.00
R6010:Cluap1	UTSW	16	3,755,437 (GRCm39)	missense	possibly damaging	0.91
R6169:Cluap1	UTSW	16	3,746,425 (GRCm39)	missense	possibly damaging	0.50
R6181:Cluap1	UTSW	16	3,751,608 (GRCm39)	missense	probably benign
R6194:Cluap1	UTSW	16	3,747,770 (GRCm39)	missense	probably benign
R6492:Cluap1	UTSW	16	3,746,476 (GRCm39)	missense	probably benign	0.03
R7091:Cluap1	UTSW	16	3,758,670 (GRCm39)	missense	probably benign	0.01
R7131:Cluap1	UTSW	16	3,758,639 (GRCm39)	missense	probably benign	0.00
R7248:Cluap1	UTSW	16	3,737,364 (GRCm39)	missense	possibly damaging	0.76
R7421:Cluap1	UTSW	16	3,758,657 (GRCm39)	missense	probably damaging	0.99
R7991:Cluap1	UTSW	16	3,746,485 (GRCm39)	missense	probably damaging	0.98
R8280:Cluap1	UTSW	16	3,729,017 (GRCm39)	unclassified	probably benign
R8459:Cluap1	UTSW	16	3,755,453 (GRCm39)	missense	probably damaging	1.00
R8790:Cluap1	UTSW	16	3,735,787 (GRCm39)	critical splice donor site	probably benign
R8964:Cluap1	UTSW	16	3,729,334 (GRCm39)	unclassified	probably benign
R9491:Cluap1	UTSW	16	3,758,732 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GGTCTTGCGGAAATGGAGAC -3'
(R):5'- GTGAACCAGGGGTAGCTATAC -3'

Sequencing Primer
(F):5'- CGGAAATGGAGACTTCTTCTGC -3'
(R):5'- GGATGTTTCCCCCAAAGAGTATAACG -3'

Posted On

2020-03-05