Mutagenetix > Incidental Mutation

Incidental Mutation 'R8448:Med17'

654610

Institutional Source

Beutler Lab

Gene Symbol

Med17

Ensembl Gene

ENSMUSG00000031935

Gene Name

mediator complex subunit 17

Synonyms

Crsp6, C330002H14Rik, Trap80

MMRRC Submission

067828-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.966) question?

Stock #

R8448 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

15171647-15191227 bp(-) (GRCm39)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

C to T at 15173735 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000034411 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034411] [ENSMUST00000034413] [ENSMUST00000213788]

AlphaFold

Q8VCD5

Predicted Effect

probably null
Transcript: ENSMUST00000034411

SMART Domains

Protein: ENSMUSP00000034411
Gene: ENSMUSG00000031935

Domain	Start	End	E-Value	Type
low complexity region	51	82	N/A	INTRINSIC
Pfam:Med17	123	452	8.5e-13	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000034413

SMART Domains

Protein: ENSMUSP00000034413
Gene: ENSMUSG00000031937

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
IG	39	138	2e-3	SMART
transmembrane domain	147	169	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000213788

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The activation of gene transcription is a multistep process that is triggered by factors that recognize transcriptional enhancer sites in DNA. These factors work with co-activators to direct transcriptional initiation by the RNA polymerase II apparatus. The protein encoded by this gene is a subunit of the CRSP (cofactor required for SP1 activation) complex, which, along with TFIID, is required for efficient activation by SP1. This protein is also a component of other multisubunit complexes e.g. thyroid hormone receptor-(TR-) associated proteins which interact with TR and facilitate TR function on DNA templates in conjunction with initiation factors and cofactors. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933430I17Rik	T	C	4: 62,461,022 (GRCm39)		probably null	Het
Adamts6	T	A	13: 104,616,027 (GRCm39)	C1030S	probably damaging	Het
Adamtsl3	C	A	7: 82,253,007 (GRCm39)	T1527K	possibly damaging	Het
Akap9	G	A	5: 3,998,897 (GRCm39)		probably null	Het
Ankle2	C	A	5: 110,389,909 (GRCm39)	P457T	possibly damaging	Het
Ankrd7	A	G	6: 18,868,007 (GRCm39)	N91S	probably damaging	Het
Ascc3	C	A	10: 50,494,173 (GRCm39)	Q203K	probably benign	Het
Baz2b	A	T	2: 59,742,137 (GRCm39)	D61E		Het
Bmpr1a	T	A	14: 34,136,759 (GRCm39)	K477N	probably benign	Het
Cacna1d	T	C	14: 29,824,364 (GRCm39)	I1040V	probably damaging	Het
Castor2	T	C	5: 134,166,955 (GRCm39)	F304L	possibly damaging	Het
Cdkn2a	C	A	4: 89,200,291 (GRCm39)	V20L	possibly damaging	Het
Chd5	A	G	4: 152,445,173 (GRCm39)	S385G	probably damaging	Het
Cntrob	A	G	11: 69,190,679 (GRCm39)	F46L	unknown	Het
Cth	T	C	3: 157,630,657 (GRCm39)	D4G	probably benign	Het
Cyld	C	T	8: 89,456,197 (GRCm39)	H416Y	probably damaging	Het
Dennd6a	C	A	14: 26,328,098 (GRCm39)	H264Q	possibly damaging	Het
Dnah1	T	C	14: 31,015,682 (GRCm39)	Y1672C	probably damaging	Het
Dnah8	A	G	17: 30,892,814 (GRCm39)	I800V	probably benign	Het
Esrp2	A	G	8: 106,858,853 (GRCm39)	Y595H	probably damaging	Het
F12	T	A	13: 55,566,301 (GRCm39)	Y497F	probably benign	Het
Fggy	A	G	4: 95,732,427 (GRCm39)	T473A	probably benign	Het
Garre1	A	T	7: 33,984,569 (GRCm39)	L18Q	probably damaging	Het
Gstt2	C	A	10: 75,668,526 (GRCm39)	R107L	probably damaging	Het
Hectd4	A	T	5: 121,358,319 (GRCm39)		probably benign	Het
Helb	A	G	10: 119,938,791 (GRCm39)	F561S	probably damaging	Het
Ints2	T	C	11: 86,146,249 (GRCm39)	T120A	probably benign	Het
Kdm5d	G	A	Y: 914,056 (GRCm39)	R331H	probably benign	Het
Krt6b	A	G	15: 101,586,455 (GRCm39)	Y345H	probably damaging	Het
Limch1	A	G	5: 67,159,825 (GRCm39)	K418E	probably damaging	Het
Lrrc37	T	A	11: 103,511,726 (GRCm39)	T81S	unknown	Het
Met	A	T	6: 17,571,799 (GRCm39)	I1373F	probably benign	Het
Naip6	T	A	13: 100,436,894 (GRCm39)	Q543L	possibly damaging	Het
Nat9	T	C	11: 115,075,902 (GRCm39)	T40A	probably damaging	Het
Notch4	A	T	17: 34,805,763 (GRCm39)		probably null	Het
Ogdh	A	G	11: 6,292,619 (GRCm39)	N455S	probably damaging	Het
Or52k2	C	A	7: 102,254,207 (GRCm39)	F215L	probably benign	Het
Pde4a	T	C	9: 21,117,534 (GRCm39)	F599L	probably benign	Het
Pga5	T	C	19: 10,649,173 (GRCm39)	Y249C	probably damaging	Het
Plekha8	A	T	6: 54,607,539 (GRCm39)	K382M	probably damaging	Het
Plekhd1	A	T	12: 80,753,149 (GRCm39)	E119V	probably damaging	Het
Pnp	A	T	14: 51,185,356 (GRCm39)	H20L	probably benign	Het
Polq	A	T	16: 36,837,559 (GRCm39)		probably null	Het
Psma3	T	G	12: 71,035,250 (GRCm39)	I177R	probably damaging	Het
Ptpn3	A	G	4: 57,240,784 (GRCm39)		probably null	Het
Ptprt	A	T	2: 161,400,806 (GRCm39)	L1077Q	probably damaging	Het
Ralgps2	A	T	1: 156,651,744 (GRCm39)		probably null	Het
Rbm47	A	T	5: 66,184,573 (GRCm39)	M10K	possibly damaging	Het
Rere	A	G	4: 150,703,653 (GRCm39)	D186G	probably damaging	Het
Rpl24	T	C	16: 55,787,453 (GRCm39)	S38P	probably damaging	Het
Slco1a1	A	T	6: 141,885,787 (GRCm39)	F79L	possibly damaging	Het
Sorl1	T	A	9: 41,903,041 (GRCm39)	D1551V	probably benign	Het
Sos1	C	A	17: 80,741,548 (GRCm39)	M412I	probably benign	Het
Spast	G	A	17: 74,666,293 (GRCm39)	V209I	probably benign	Het
Spindoc	G	T	19: 7,335,769 (GRCm39)	Q340K	possibly damaging	Het
Tlr6	T	C	5: 65,111,185 (GRCm39)	Y574C	probably damaging	Het
Tnrc6a	A	G	7: 122,791,346 (GRCm39)	N1748S	possibly damaging	Het
Trbv13-2	A	T	6: 41,098,474 (GRCm39)	K16N	probably benign	Het
Triobp	C	T	15: 78,878,326 (GRCm39)	H1750Y	possibly damaging	Het
Usp24	A	G	4: 106,225,933 (GRCm39)	D659G	possibly damaging	Het
Vmn2r88	T	A	14: 51,656,253 (GRCm39)	C821S	probably damaging	Het
Whamm	T	A	7: 81,224,295 (GRCm39)	V197D	probably damaging	Het
Zfp777	A	G	6: 48,006,101 (GRCm39)	F431S	probably damaging	Het

Other mutations in Med17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01062:Med17	APN	9	15,190,917 (GRCm39)	missense	probably benign	0.19
IGL02263:Med17	APN	9	15,178,772 (GRCm39)	missense	probably damaging	0.98
IGL02390:Med17	APN	9	15,188,963 (GRCm39)	nonsense	probably null
IGL02391:Med17	APN	9	15,188,963 (GRCm39)	nonsense	probably null
IGL02392:Med17	APN	9	15,188,963 (GRCm39)	nonsense	probably null
IGL02393:Med17	APN	9	15,188,963 (GRCm39)	nonsense	probably null
IGL02591:Med17	APN	9	15,181,657 (GRCm39)	missense	probably damaging	1.00
IGL02635:Med17	APN	9	15,185,845 (GRCm39)	missense	probably damaging	1.00
IGL02745:Med17	APN	9	15,176,642 (GRCm39)	splice site	probably benign
IGL02815:Med17	APN	9	15,173,563 (GRCm39)	missense	probably damaging	1.00
IGL02897:Med17	APN	9	15,178,830 (GRCm39)	missense	probably damaging	1.00
R1448:Med17	UTSW	9	15,187,139 (GRCm39)	splice site	probably null
R2912:Med17	UTSW	9	15,187,210 (GRCm39)	missense	probably damaging	1.00
R2937:Med17	UTSW	9	15,187,187 (GRCm39)	missense	probably damaging	0.99
R3715:Med17	UTSW	9	15,175,062 (GRCm39)	splice site	probably benign
R4175:Med17	UTSW	9	15,178,765 (GRCm39)	missense	possibly damaging	0.93
R4557:Med17	UTSW	9	15,182,993 (GRCm39)	missense	possibly damaging	0.86
R4701:Med17	UTSW	9	15,181,656 (GRCm39)	missense	probably damaging	1.00
R4865:Med17	UTSW	9	15,176,668 (GRCm39)	nonsense	probably null
R5169:Med17	UTSW	9	15,188,900 (GRCm39)	missense	probably benign	0.03
R5510:Med17	UTSW	9	15,181,700 (GRCm39)	missense	probably benign
R6326:Med17	UTSW	9	15,190,854 (GRCm39)	missense	probably benign	0.32
R6393:Med17	UTSW	9	15,185,879 (GRCm39)	missense	probably damaging	1.00
R6598:Med17	UTSW	9	15,182,996 (GRCm39)	missense	probably benign	0.29
R7722:Med17	UTSW	9	15,182,987 (GRCm39)	missense	probably benign	0.01
R8181:Med17	UTSW	9	15,188,928 (GRCm39)	missense	possibly damaging	0.75
R8348:Med17	UTSW	9	15,173,735 (GRCm39)	critical splice acceptor site	probably null
R8377:Med17	UTSW	9	15,173,655 (GRCm39)	missense	probably damaging	1.00
R8754:Med17	UTSW	9	15,188,896 (GRCm39)	missense	possibly damaging	0.73
R9409:Med17	UTSW	9	15,176,695 (GRCm39)	missense	probably benign	0.00
R9655:Med17	UTSW	9	15,176,719 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- TTGTTCTGGAGAAAATCACAGCAG -3'
(R):5'- TTACTATGCAGTCAGAAGCAGC -3'

Sequencing Primer
(F):5'- TCAGGGCAGACATAAGCAGCTC -3'
(R):5'- GTCAGAAGCAGCCTCGAACTC -3'

Posted On

2020-10-20