Mutagenetix > Incidental Mutation

Incidental Mutation 'R8957:Pate2'

682108

Institutional Source

Beutler Lab

Gene Symbol

Pate2

Ensembl Gene

ENSMUSG00000074452

Gene Name

prostate and testis expressed 2

Synonyms

LOC330921, mANLP1

MMRRC Submission

068793-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8957 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

35580935-35584185 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 35596911 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 100 (W100R)

Ref Sequence

ENSEMBL: ENSMUSP00000096505 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098906] [ENSMUST00000170021]

AlphaFold

Q3UW31

Predicted Effect

probably benign
Transcript: ENSMUST00000098906
AA Change: W100R

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000096505
Gene: ENSMUSG00000074452
AA Change: W100R

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000170021

SMART Domains

Protein: ENSMUSP00000130484
Gene: ENSMUSG00000091215

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

100% (66/66)

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1500011B03Rik	A	G	5: 114,951,891 (GRCm39)	V28A	probably benign	Het
Abca12	T	A	1: 71,360,784 (GRCm39)	D503V	possibly damaging	Het
Aco2	A	T	15: 81,773,701 (GRCm39)		probably benign	Het
Aff1	A	G	5: 103,981,634 (GRCm39)	Q591R	possibly damaging	Het
Ankle2	G	A	5: 110,379,121 (GRCm39)	A7T	possibly damaging	Het
Ankrd12	T	C	17: 66,291,491 (GRCm39)	N1314S	probably benign	Het
Apeh	A	T	9: 107,969,572 (GRCm39)	M216K	probably benign	Het
Armh1	T	C	4: 117,087,104 (GRCm39)	Y187C	probably damaging	Het
Ascc3	C	A	10: 50,576,208 (GRCm39)	A821E	probably damaging	Het
Atf7ip	A	G	6: 136,543,701 (GRCm39)	D650G	probably null	Het
Cav1	T	A	6: 17,339,235 (GRCm39)	F107I	probably benign	Het
Ccdc146	A	G	5: 21,514,585 (GRCm39)		probably benign	Het
Ccdc57	A	G	11: 120,776,861 (GRCm39)	I513T	probably benign	Het
Ccrl2	T	C	9: 110,884,557 (GRCm39)	R314G	probably benign	Het
Cd1d1	T	C	3: 86,906,140 (GRCm39)	D45G	probably damaging	Het
Cfap74	G	A	4: 155,521,187 (GRCm39)	E620K		Het
Col4a1	T	A	8: 11,295,906 (GRCm39)		probably benign	Het
Cux2	C	T	5: 121,999,011 (GRCm39)	G1310R	probably benign	Het
Cyld	G	T	8: 89,432,410 (GRCm39)	R136L	probably damaging	Het
Cyp4v3	A	T	8: 45,760,018 (GRCm39)	N511K	probably benign	Het
Dchs2	G	A	3: 83,189,573 (GRCm39)	V1646M		Het
Des	A	T	1: 75,340,295 (GRCm39)	I401F	probably damaging	Het
Dis3	T	C	14: 99,337,027 (GRCm39)	D28G	probably damaging	Het
Dnai4	T	C	4: 102,953,950 (GRCm39)	D83G	probably damaging	Het
Ehd1	A	G	19: 6,344,439 (GRCm39)	Y233C	probably damaging	Het
Fcrlb	G	A	1: 170,735,536 (GRCm39)	A246V	probably benign	Het
Firrm	C	T	1: 163,792,335 (GRCm39)	R554H	probably damaging	Het
Fnta	T	C	8: 26,489,541 (GRCm39)	R357G	probably benign	Het
Fpgs	T	C	2: 32,575,354 (GRCm39)	D420G	probably damaging	Het
Hdac4	T	C	1: 91,873,757 (GRCm39)		probably null	Het
Hdhd5	C	T	6: 120,495,404 (GRCm39)		probably null	Het
Iqgap2	G	A	13: 95,772,154 (GRCm39)	R1342C	probably damaging	Het
Isyna1	T	G	8: 71,049,372 (GRCm39)	L428R	probably damaging	Het
Jmjd4	C	T	11: 59,340,884 (GRCm39)		probably benign	Het
Klra1	A	G	6: 130,357,609 (GRCm39)	V6A	possibly damaging	Het
Klrb1b	T	A	6: 128,795,522 (GRCm39)	K124N	probably benign	Het
Krtap19-3	T	C	16: 88,674,833 (GRCm39)		probably benign	Het
Lrrc74b	T	C	16: 17,378,976 (GRCm39)	T34A	probably benign	Het
Map9	A	G	3: 82,278,687 (GRCm39)	Y229C	probably benign	Het
Mmp28	T	C	11: 83,334,636 (GRCm39)	I373V	possibly damaging	Het
Mpdz	A	T	4: 81,251,216 (GRCm39)	Y1086*	probably null	Het
Myct1	C	T	10: 5,554,208 (GRCm39)	T25I	probably damaging	Het
Myh4	A	G	11: 67,141,780 (GRCm39)	K880E	possibly damaging	Het
Nav2	T	G	7: 49,220,964 (GRCm39)	V1656G	probably damaging	Het
Or12d13	A	G	17: 37,647,382 (GRCm39)	V247A	probably damaging	Het
Or1a1	T	A	11: 74,086,772 (GRCm39)	S148T	probably damaging	Het
Or5b101	T	A	19: 13,004,881 (GRCm39)	I271F	probably benign	Het
Pcdhb11	A	C	18: 37,554,692 (GRCm39)	K7N	probably benign	Het
Pcdhb11	A	G	18: 37,555,872 (GRCm39)	T401A	probably benign	Het
Pgam1	T	A	19: 41,905,215 (GRCm39)	I183N	possibly damaging	Het
Pou5f1	T	G	17: 35,821,366 (GRCm39)	L326R	possibly damaging	Het
Rbm34	A	C	8: 127,692,208 (GRCm39)	V178G	probably benign	Het
Rc3h2	A	G	2: 37,289,660 (GRCm39)	V384A	possibly damaging	Het
Sec62	T	A	3: 30,864,671 (GRCm39)	F178L	unknown	Het
Slco1a6	T	C	6: 142,091,493 (GRCm39)	N69S	probably damaging	Het
Smok2b	T	A	17: 13,453,873 (GRCm39)	L11Q	probably damaging	Het
Snai2	T	C	16: 14,526,113 (GRCm39)	S255P	probably damaging	Het
Spata31h1	A	G	10: 82,124,908 (GRCm39)	Y2701H	probably benign	Het
Tesk2	T	A	4: 116,659,910 (GRCm39)	F343I	probably benign	Het
Tmem106c	A	T	15: 97,867,481 (GRCm39)	I222F	probably benign	Het
Tmub1	G	T	5: 24,651,775 (GRCm39)	T63K	probably benign	Het
Tnip3	A	G	6: 65,582,843 (GRCm39)	T217A	probably benign	Het
Vmn2r10	T	G	5: 109,149,780 (GRCm39)	K421N	possibly damaging	Het
Zfp975	A	T	7: 42,311,157 (GRCm39)	H485Q	probably damaging	Het

Other mutations in Pate2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01475:Pate2	APN	9	35,580,998 (GRCm39)	start codon destroyed	probably null
IGL01729:Pate2	APN	9	35,581,888 (GRCm39)	missense	probably damaging	1.00
IGL03055:Pate2	APN	9	35,523,069 (GRCm39)	splice site	probably benign
foie_gras	UTSW	9	35,581,797 (GRCm39)	nonsense	probably null
PIT4576001:Pate2	UTSW	9	35,581,889 (GRCm39)	missense	probably damaging	1.00
R1229:Pate2	UTSW	9	35,580,991 (GRCm39)	missense	probably damaging	0.98
R1397:Pate2	UTSW	9	35,580,991 (GRCm39)	missense	probably damaging	0.98
R2393:Pate2	UTSW	9	35,581,036 (GRCm39)	splice site	probably benign
R2426:Pate2	UTSW	9	35,581,776 (GRCm39)	critical splice acceptor site	probably null
R3407:Pate2	UTSW	9	35,582,262 (GRCm39)	missense	probably damaging	0.99
R4323:Pate2	UTSW	9	35,581,767 (GRCm39)	splice site	probably benign
R4574:Pate2	UTSW	9	35,596,969 (GRCm39)	intron	probably benign
R4716:Pate2	UTSW	9	35,596,978 (GRCm39)	intron	probably benign
R5023:Pate2	UTSW	9	35,597,407 (GRCm39)	intron	probably benign
R5057:Pate2	UTSW	9	35,597,407 (GRCm39)	intron	probably benign
R5384:Pate2	UTSW	9	35,581,837 (GRCm39)	missense	probably damaging	0.98
R5574:Pate2	UTSW	9	35,597,411 (GRCm39)	intron	probably benign
R5593:Pate2	UTSW	9	35,581,778 (GRCm39)	missense	possibly damaging	0.76
R5851:Pate2	UTSW	9	35,581,797 (GRCm39)	nonsense	probably null
R6510:Pate2	UTSW	9	35,581,018 (GRCm39)	missense	probably null	0.99
R6800:Pate2	UTSW	9	35,596,941 (GRCm39)	intron	probably benign
R6819:Pate2	UTSW	9	35,581,801 (GRCm39)	missense	probably damaging	1.00
R7531:Pate2	UTSW	9	35,582,008 (GRCm39)	splice site	probably null
R7765:Pate2	UTSW	9	35,581,197 (GRCm39)	missense	probably benign	0.15
R7842:Pate2	UTSW	9	35,581,829 (GRCm39)	missense	probably damaging	1.00
R8015:Pate2	UTSW	9	35,581,814 (GRCm39)	missense	probably damaging	0.99
R9126:Pate2	UTSW	9	35,581,908 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCAACATGAGAGGCTTAAGTGC -3'
(R):5'- GGTAAAACCCATGATGCACTATGG -3'

Sequencing Primer
(F):5'- TGCACAAAGGATTACCACTGTG -3'
(R):5'- AATGGTGGTGGATGCTGAAGC -3'

Posted On

2021-08-31