Mutagenetix > Incidental Mutation

Incidental Mutation 'R6365:Papolg'

512648

Institutional Source

Beutler Lab

Gene Symbol

Papolg

Ensembl Gene

ENSMUSG00000020273

Gene Name

poly(A) polymerase gamma

Synonyms

9630006B20Rik

MMRRC Submission

044515-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.939) question?

Stock #

R6365 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

23812646-23845253 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 23832290 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 166 (D166G)

Ref Sequence

ENSEMBL: ENSMUSP00000099927 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020513] [ENSMUST00000102863]

AlphaFold

Q6PCL9

Predicted Effect

probably damaging
Transcript: ENSMUST00000020513
AA Change: D166G

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000020513
Gene: ENSMUSG00000020273
AA Change: D166G

Domain	Start	End	E-Value	Type
Pfam:PAP_central	20	363	1.4e-118	PFAM
Pfam:NTP_transf_2	53	174	2.8e-15	PFAM
Pfam:PAP_RNA-bind	365	431	2.4e-22	PFAM
Pfam:PAP_RNA-bind	421	506	1.2e-8	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000102863
AA Change: D166G

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000099927
Gene: ENSMUSG00000020273
AA Change: D166G

Domain	Start	End	E-Value	Type
Pfam:PAP_central	16	364	1.5e-111	PFAM
Pfam:NTP_transf_2	89	174	9.2e-12	PFAM
Pfam:PAP_RNA-bind	365	429	6.6e-25	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150711

Meta Mutation Damage Score

0.9378

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 93.8%

Validation Efficiency

98% (57/58)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the poly(A) polymerase family which catalyzes template-independent extension of the 3' end of a DNA/RNA strand. This enzyme shares 60% identity to the well characterized poly(A) polymerase II (PAPII) at the amino acid level. These two enzymes have similar organization of structural and functional domains. This enzyme is exclusively localized in the nucleus and exhibits both nonspecific and CPSF (cleavage and polyadenylation specificity factor)/AAUAAA-dependent polyadenylation activity. This gene is located on chromosome 2 in contrast to the PAPII gene, which is located on chromosome 14. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900026A02Rik	G	T	5: 113,330,510 (GRCm39)	R1235S	probably benign	Het
Abca9	T	A	11: 110,036,481 (GRCm39)	I543F	possibly damaging	Het
Acot6	A	G	12: 84,156,186 (GRCm39)	E378G	probably benign	Het
Adam30	T	C	3: 98,068,350 (GRCm39)	L61S	probably damaging	Het
Agap3	T	A	5: 24,679,983 (GRCm39)	L227Q	probably benign	Het
Ap5m1	T	C	14: 49,316,285 (GRCm39)	I285T	probably benign	Het
Atp2a2	A	G	5: 122,599,979 (GRCm39)	Y497H	probably benign	Het
Bace1	C	T	9: 45,765,974 (GRCm39)	Q17*	probably null	Het
Calcr	T	C	6: 3,711,455 (GRCm39)	I189V	probably benign	Het
Cd48	A	T	1: 171,509,732 (GRCm39)	Q24L	probably null	Het
Cnga1	T	C	5: 72,762,288 (GRCm39)	I409V	probably benign	Het
Ctsd	G	A	7: 141,939,314 (GRCm39)	T37M	probably benign	Het
Cyp2c29	T	C	19: 39,296,198 (GRCm39)	S171P	probably damaging	Het
Dnaaf11	A	T	15: 66,325,983 (GRCm39)	S197R	probably benign	Het
Dnah8	G	A	17: 30,967,542 (GRCm39)	D2585N	probably benign	Het
Drd2	A	T	9: 49,318,249 (GRCm39)	N397I	probably damaging	Het
Dst	A	G	1: 34,231,008 (GRCm39)	E3045G	probably damaging	Het
Dzip3	T	A	16: 48,751,636 (GRCm39)	R764S	probably damaging	Het
Efcab3	A	G	11: 104,815,412 (GRCm39)	E3247G	unknown	Het
Exosc10	T	C	4: 148,645,562 (GRCm39)	V114A	probably benign	Het
Fam234a	C	A	17: 26,439,429 (GRCm39)	E32*	probably null	Het
Fbxw11	C	A	11: 32,670,623 (GRCm39)	D162E	possibly damaging	Het
Fcho2	A	T	13: 98,926,367 (GRCm39)	M72K	probably benign	Het
Fech	T	C	18: 64,591,251 (GRCm39)	N391S	probably benign	Het
Foxp2	T	C	6: 15,286,684 (GRCm39)	L58P	probably damaging	Het
Gdi2	A	G	13: 3,615,093 (GRCm39)	D430G	possibly damaging	Het
Grm8	C	T	6: 27,363,226 (GRCm39)	C763Y	probably damaging	Het
H2bc6	C	T	13: 23,769,641 (GRCm39)	R100H	probably benign	Het
Hibch	T	A	1: 52,908,096 (GRCm39)		probably null	Het
Ifi44l	C	T	3: 151,467,142 (GRCm39)	V63I	unknown	Het
Igf1r	G	T	7: 67,839,798 (GRCm39)	A702S	probably benign	Het
Kctd13	G	A	7: 126,529,862 (GRCm39)	R101Q	probably damaging	Het
Klhl33	T	C	14: 51,129,294 (GRCm39)	D645G	probably benign	Het
Mylk	A	G	16: 34,680,961 (GRCm39)	T74A	probably benign	Het
Myo1f	A	G	17: 33,805,090 (GRCm39)	S453G	probably benign	Het
Naxe	A	G	3: 87,965,298 (GRCm39)	V105A	probably damaging	Het
Nid2	A	G	14: 19,853,201 (GRCm39)	Y1140C	probably damaging	Het
Nlrp12	T	C	7: 3,288,518 (GRCm39)	T665A	probably benign	Het
Or51l4	T	A	7: 103,404,402 (GRCm39)	H130L	probably benign	Het
Otud7b	T	G	3: 96,062,567 (GRCm39)	I602S	probably benign	Het
Pakap	G	T	4: 57,709,675 (GRCm39)	G207*	probably null	Het
Pbx4	T	G	8: 70,324,857 (GRCm39)		probably null	Het
Pdcd4	T	C	19: 53,910,564 (GRCm39)		probably null	Het
Pde2a	C	T	7: 101,159,570 (GRCm39)	T800I	probably damaging	Het
Polk	A	T	13: 96,620,517 (GRCm39)	V582E	probably damaging	Het
Prss40	A	G	1: 34,591,598 (GRCm39)		probably benign	Het
Robo4	G	T	9: 37,322,008 (GRCm39)	R597L	probably benign	Het
Scg2	T	A	1: 79,413,017 (GRCm39)	I529F	probably benign	Het
Sema7a	T	C	9: 57,862,188 (GRCm39)	F180L	probably benign	Het
Sowahc	T	C	10: 59,059,349 (GRCm39)	L495P	probably damaging	Het
Trf	A	G	9: 103,099,327 (GRCm39)	V324A	possibly damaging	Het
Uox	C	T	3: 146,330,332 (GRCm39)	R163*	probably null	Het
Vip	C	T	10: 5,594,021 (GRCm39)	R125*	probably null	Het
Vmn1r159	T	A	7: 22,542,826 (GRCm39)	T69S	probably damaging	Het
Vmn1r202	A	T	13: 22,686,374 (GRCm39)	F14L	probably benign	Het
Vmn1r53	T	C	6: 90,201,241 (GRCm39)	N28D	probably damaging	Het
Vmn2r58	T	A	7: 41,513,607 (GRCm39)	K345N	probably benign	Het
Zbtb17	G	A	4: 141,190,694 (GRCm39)	G171S	probably benign	Het
Zbtb8os	A	T	4: 129,236,945 (GRCm39)	N120I	possibly damaging	Het
Zfp959	T	A	17: 56,204,785 (GRCm39)	L274H	probably damaging	Het

Other mutations in Papolg

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00987:Papolg	APN	11	23,826,377 (GRCm39)	missense	possibly damaging	0.93
IGL01016:Papolg	APN	11	23,835,570 (GRCm39)	missense	possibly damaging	0.58
IGL01394:Papolg	APN	11	23,817,235 (GRCm39)	missense	probably benign
IGL01710:Papolg	APN	11	23,814,026 (GRCm39)	missense	probably damaging	0.99
IGL01786:Papolg	APN	11	23,824,488 (GRCm39)	missense	probably damaging	1.00
IGL02008:Papolg	APN	11	23,829,898 (GRCm39)	missense	probably damaging	1.00
IGL02127:Papolg	APN	11	23,820,870 (GRCm39)	unclassified	probably benign
IGL02329:Papolg	APN	11	23,841,869 (GRCm39)	missense	probably damaging	0.98
IGL02535:Papolg	APN	11	23,840,245 (GRCm39)	missense	probably benign	0.00
IGL02588:Papolg	APN	11	23,840,252 (GRCm39)	missense	probably damaging	1.00
IGL03058:Papolg	APN	11	23,845,029 (GRCm39)	missense	probably benign	0.00
IGL03301:Papolg	APN	11	23,824,503 (GRCm39)	missense	probably benign	0.05
Runningback	UTSW	11	23,823,919 (GRCm39)	splice site	probably null
R0124:Papolg	UTSW	11	23,817,535 (GRCm39)	missense	probably benign	0.21
R0369:Papolg	UTSW	11	23,822,425 (GRCm39)	critical splice donor site	probably null
R0454:Papolg	UTSW	11	23,829,868 (GRCm39)	splice site	probably null
R0743:Papolg	UTSW	11	23,820,818 (GRCm39)	splice site	probably null
R0931:Papolg	UTSW	11	23,832,257 (GRCm39)	missense	probably damaging	0.96
R1856:Papolg	UTSW	11	23,817,379 (GRCm39)	missense	probably benign	0.06
R1940:Papolg	UTSW	11	23,817,279 (GRCm39)	missense	probably benign	0.00
R2239:Papolg	UTSW	11	23,826,378 (GRCm39)	missense	probably damaging	0.99
R3802:Papolg	UTSW	11	23,826,449 (GRCm39)	missense	probably damaging	1.00
R4275:Papolg	UTSW	11	23,818,378 (GRCm39)	missense	probably benign
R4989:Papolg	UTSW	11	23,823,919 (GRCm39)	splice site	probably null
R5074:Papolg	UTSW	11	23,817,331 (GRCm39)	missense	possibly damaging	0.78
R5122:Papolg	UTSW	11	23,817,501 (GRCm39)	critical splice donor site	probably null
R6048:Papolg	UTSW	11	23,841,815 (GRCm39)	missense	probably benign	0.04
R6577:Papolg	UTSW	11	23,829,857 (GRCm39)	critical splice donor site	probably benign
R7117:Papolg	UTSW	11	23,845,207 (GRCm39)	start gained	probably benign
R7283:Papolg	UTSW	11	23,817,394 (GRCm39)	missense	not run
R7372:Papolg	UTSW	11	23,816,439 (GRCm39)	missense	probably benign	0.16
R7761:Papolg	UTSW	11	23,841,884 (GRCm39)	missense	probably benign	0.05
R8503:Papolg	UTSW	11	23,820,292 (GRCm39)	missense	probably benign	0.01
R9212:Papolg	UTSW	11	23,823,817 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CCATTAACAATTCCATAAAAGGGCT -3'
(R):5'- CAAGATATTCAATGATTGCCCCA -3'

Sequencing Primer
(F):5'- CTGCTGCCAGGACAATCTTTAGAG -3'
(R):5'- CAATGATTGCCCCATATTAGGTCAC -3'

Posted On

2018-04-27