Incidental Mutation 'R0089:Prdm10'
| ID |
20071 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Prdm10
|
| Ensembl Gene |
ENSMUSG00000042496 |
| Gene Name |
PR domain containing 10 |
| Synonyms |
LOC382066, tristanin |
| MMRRC Submission |
038376-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R0089 (G1)
|
| Quality Score |
209 |
|
Status
|
Validated
(trace)
|
| Chromosome |
9 |
| Chromosomal Location |
31191834-31293019 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 31227526 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Cysteine
at position 44
(R44C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149699
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000074510]
[ENSMUST00000117389]
[ENSMUST00000215499]
[ENSMUST00000215847]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000074510
AA Change: R40C
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000074104
Gene: ENSMUSG00000042496
AA Change: R40C
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
low complexity region
|
111 |
117 |
N/A |
INTRINSIC |
|
PDB:3IHX|D
|
133 |
284 |
1e-104 |
PDB |
|
Blast:SET
|
165 |
277 |
3e-32 |
BLAST |
|
ZnF_C2H2
|
300 |
322 |
5.42e-2 |
SMART |
|
Pfam:Tristanin_u2
|
325 |
455 |
2.4e-49 |
PFAM |
|
ZnF_C2H2
|
471 |
493 |
7.78e-3 |
SMART |
|
ZnF_C2H2
|
501 |
523 |
1.95e-3 |
SMART |
|
ZnF_C2H2
|
529 |
551 |
3.83e-2 |
SMART |
|
ZnF_C2H2
|
557 |
580 |
8.34e-3 |
SMART |
|
ZnF_C2H2
|
585 |
607 |
3.21e-4 |
SMART |
|
ZnF_C2H2
|
613 |
636 |
3.69e-4 |
SMART |
|
ZnF_C2H2
|
668 |
691 |
8.22e-2 |
SMART |
|
ZnF_C2H2
|
801 |
824 |
1.25e-1 |
SMART |
|
low complexity region
|
904 |
916 |
N/A |
INTRINSIC |
|
low complexity region
|
956 |
964 |
N/A |
INTRINSIC |
|
low complexity region
|
988 |
1007 |
N/A |
INTRINSIC |
|
low complexity region
|
1110 |
1122 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000117389
AA Change: R44C
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000112588
Gene: ENSMUSG00000042496
AA Change: R44C
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
119 |
150 |
N/A |
INTRINSIC |
|
PDB:3IHX|D
|
182 |
317 |
2e-97 |
PDB |
|
Blast:SET
|
214 |
317 |
2e-25 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136144
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000215499
AA Change: R44C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000215847
AA Change: R44C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Meta Mutation Damage Score |
0.1692 |
| Coding Region Coverage |
- 1x: 98.9%
- 3x: 97.9%
- 10x: 95.6%
- 20x: 90.5%
|
| Validation Efficiency |
98% (82/84) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a transcription factor that contains C2H2-type zinc-fingers. It also contains a positive regulatory domain, which has been found in several other zinc-finger transcription factors including those involved in B cell differentiation and tumor suppression. Studies of the mouse counterpart suggest that this protein may be involved in the development of the central nerve system (CNS), as well as in the pathogenesis of neuronal storage disease. Multiple alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 78 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Aadacl4fm2 |
T |
A |
4: 144,282,303 (GRCm39) |
H163L |
probably benign |
Het |
| Abca13 |
T |
A |
11: 9,242,886 (GRCm39) |
V1583E |
possibly damaging |
Het |
| Ablim1 |
G |
T |
19: 57,031,463 (GRCm39) |
S654Y |
probably damaging |
Het |
| Acbd4 |
T |
C |
11: 102,994,819 (GRCm39) |
F59S |
probably damaging |
Het |
| Acot1 |
T |
C |
12: 84,063,708 (GRCm39) |
I272T |
probably damaging |
Het |
| Ankhd1 |
A |
G |
18: 36,773,409 (GRCm39) |
D1402G |
probably damaging |
Het |
| Birc6 |
T |
A |
17: 74,945,371 (GRCm39) |
F2800I |
possibly damaging |
Het |
| Brd1 |
T |
C |
15: 88,585,401 (GRCm39) |
E811G |
probably benign |
Het |
| Catspere2 |
C |
T |
1: 177,874,555 (GRCm39) |
P141S |
unknown |
Het |
| Ccdc106 |
A |
G |
7: 5,059,220 (GRCm39) |
|
probably null |
Het |
| Ccdc81 |
G |
T |
7: 89,542,324 (GRCm39) |
A184E |
possibly damaging |
Het |
| Cenpt |
T |
C |
8: 106,573,000 (GRCm39) |
T364A |
probably benign |
Het |
| Crybg2 |
T |
C |
4: 133,808,505 (GRCm39) |
S1060P |
probably damaging |
Het |
| Dnttip2 |
A |
G |
3: 122,069,111 (GRCm39) |
T109A |
possibly damaging |
Het |
| Dpy19l2 |
A |
G |
9: 24,607,089 (GRCm39) |
L124P |
probably benign |
Het |
| Eif1ad19 |
A |
T |
12: 87,740,283 (GRCm39) |
I92N |
probably damaging |
Het |
| Fat3 |
T |
C |
9: 15,849,501 (GRCm39) |
D3967G |
probably benign |
Het |
| Fbxo21 |
T |
A |
5: 118,146,208 (GRCm39) |
F610L |
probably benign |
Het |
| Fmo9 |
T |
C |
1: 166,494,878 (GRCm39) |
D341G |
probably benign |
Het |
| Frem3 |
A |
T |
8: 81,342,507 (GRCm39) |
H1600L |
possibly damaging |
Het |
| Fry |
A |
T |
5: 150,263,892 (GRCm39) |
K133N |
possibly damaging |
Het |
| Gm10647 |
A |
G |
9: 66,705,612 (GRCm39) |
|
probably benign |
Het |
| Gmps |
T |
C |
3: 63,906,119 (GRCm39) |
F472S |
probably benign |
Het |
| Grb10 |
T |
C |
11: 11,884,192 (GRCm39) |
|
probably benign |
Het |
| Grm6 |
G |
A |
11: 50,750,792 (GRCm39) |
G652S |
probably damaging |
Het |
| Heca |
G |
T |
10: 17,783,848 (GRCm39) |
D468E |
probably damaging |
Het |
| Heg1 |
C |
T |
16: 33,583,985 (GRCm39) |
S1033L |
probably damaging |
Het |
| Hepacam2 |
A |
G |
6: 3,487,094 (GRCm39) |
S12P |
probably damaging |
Het |
| Impdh1 |
G |
T |
6: 29,206,325 (GRCm39) |
H195N |
probably benign |
Het |
| Ipo7 |
T |
C |
7: 109,649,972 (GRCm39) |
|
probably benign |
Het |
| Itpr2 |
C |
T |
6: 146,251,520 (GRCm39) |
|
probably null |
Het |
| Kcnh6 |
G |
A |
11: 105,899,848 (GRCm39) |
C39Y |
probably benign |
Het |
| Kif26a |
T |
C |
12: 112,143,837 (GRCm39) |
S1364P |
probably damaging |
Het |
| Lins1 |
T |
A |
7: 66,361,796 (GRCm39) |
|
probably benign |
Het |
| Lrpap1 |
C |
T |
5: 35,252,232 (GRCm39) |
V328M |
possibly damaging |
Het |
| Lyn |
T |
G |
4: 3,748,768 (GRCm39) |
L249V |
probably benign |
Het |
| Mpp7 |
A |
G |
18: 7,439,555 (GRCm39) |
|
probably benign |
Het |
| Mtmr9 |
A |
G |
14: 63,765,696 (GRCm39) |
F400L |
possibly damaging |
Het |
| Mto1 |
G |
A |
9: 78,381,154 (GRCm39) |
S666N |
probably benign |
Het |
| Nanos3 |
C |
T |
8: 84,902,763 (GRCm39) |
R133Q |
probably damaging |
Het |
| Nsg1 |
T |
C |
5: 38,312,974 (GRCm39) |
E75G |
probably benign |
Het |
| Nsun4 |
A |
G |
4: 115,892,970 (GRCm39) |
M283T |
probably benign |
Het |
| Obscn |
A |
G |
11: 58,890,888 (GRCm39) |
S7215P |
unknown |
Het |
| Or11j4 |
T |
C |
14: 50,630,321 (GRCm39) |
I36T |
probably benign |
Het |
| Or13a20 |
T |
C |
7: 140,232,224 (GRCm39) |
S111P |
probably damaging |
Het |
| Or1j12 |
G |
A |
2: 36,343,107 (GRCm39) |
R170K |
probably benign |
Het |
| Or2y13 |
G |
A |
11: 49,415,033 (GRCm39) |
S161N |
possibly damaging |
Het |
| Or52e4 |
T |
A |
7: 104,706,297 (GRCm39) |
Y281* |
probably null |
Het |
| Or5al1 |
A |
C |
2: 85,989,918 (GRCm39) |
S265R |
possibly damaging |
Het |
| Or9m1b |
T |
C |
2: 87,836,331 (GRCm39) |
I264V |
probably damaging |
Het |
| Per1 |
T |
C |
11: 68,994,869 (GRCm39) |
F563S |
probably benign |
Het |
| Pik3c3 |
T |
A |
18: 30,436,131 (GRCm39) |
|
probably benign |
Het |
| Pitrm1 |
A |
T |
13: 6,605,675 (GRCm39) |
K207N |
probably damaging |
Het |
| Rab40c |
A |
T |
17: 26,104,122 (GRCm39) |
I90N |
probably damaging |
Het |
| Rbl1 |
A |
G |
2: 157,041,334 (GRCm39) |
|
probably null |
Het |
| Rnf17 |
G |
A |
14: 56,751,563 (GRCm39) |
G1467E |
probably damaging |
Het |
| Rpgrip1 |
A |
G |
14: 52,386,841 (GRCm39) |
|
probably benign |
Het |
| Sall1 |
A |
T |
8: 89,756,896 (GRCm39) |
N1069K |
probably benign |
Het |
| Scap |
T |
C |
9: 110,201,290 (GRCm39) |
I93T |
possibly damaging |
Het |
| Sez6 |
T |
C |
11: 77,865,170 (GRCm39) |
|
probably benign |
Het |
| Slc22a30 |
A |
T |
19: 8,347,561 (GRCm39) |
S280T |
probably benign |
Het |
| Slc26a5 |
A |
C |
5: 22,016,342 (GRCm39) |
|
probably null |
Het |
| St18 |
T |
C |
1: 6,919,172 (GRCm39) |
V901A |
probably benign |
Het |
| Syne2 |
T |
C |
12: 76,010,650 (GRCm39) |
L2519P |
probably damaging |
Het |
| Syne4 |
G |
A |
7: 30,018,344 (GRCm39) |
G362E |
probably damaging |
Het |
| Tmem51 |
T |
C |
4: 141,759,236 (GRCm39) |
T171A |
probably benign |
Het |
| Tns4 |
A |
T |
11: 98,966,024 (GRCm39) |
I453N |
probably damaging |
Het |
| Trank1 |
A |
T |
9: 111,221,978 (GRCm39) |
H2905L |
probably benign |
Het |
| Trim13 |
C |
T |
14: 61,842,166 (GRCm39) |
T61I |
possibly damaging |
Het |
| Trim75 |
T |
C |
8: 65,435,580 (GRCm39) |
Q290R |
possibly damaging |
Het |
| Ttn |
C |
A |
2: 76,559,544 (GRCm39) |
R29619L |
probably damaging |
Het |
| Ugt2b38 |
T |
A |
5: 87,568,417 (GRCm39) |
M293L |
probably benign |
Het |
| Vmn1r22 |
T |
A |
6: 57,877,513 (GRCm39) |
N155Y |
probably benign |
Het |
| Vmn2r18 |
T |
C |
5: 151,508,269 (GRCm39) |
Y285C |
probably benign |
Het |
| Vmn2r84 |
C |
T |
10: 130,222,588 (GRCm39) |
|
probably benign |
Het |
| Vwde |
A |
C |
6: 13,220,004 (GRCm39) |
L49R |
probably damaging |
Het |
| Yipf2 |
T |
A |
9: 21,503,262 (GRCm39) |
E68D |
possibly damaging |
Het |
| Zfand5 |
C |
A |
19: 21,257,122 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Prdm10 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00087:Prdm10
|
APN |
9 |
31,272,108 (GRCm39) |
splice site |
probably benign |
|
|
IGL00485:Prdm10
|
APN |
9 |
31,238,842 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
IGL00757:Prdm10
|
APN |
9 |
31,229,842 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
IGL00836:Prdm10
|
APN |
9 |
31,241,165 (GRCm39) |
splice site |
probably benign |
|
|
IGL01505:Prdm10
|
APN |
9 |
31,238,578 (GRCm39) |
missense |
probably benign |
|
|
IGL01594:Prdm10
|
APN |
9 |
31,258,149 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01894:Prdm10
|
APN |
9 |
31,227,557 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01927:Prdm10
|
APN |
9 |
31,246,694 (GRCm39) |
splice site |
probably benign |
|
|
IGL02053:Prdm10
|
APN |
9 |
31,272,144 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02068:Prdm10
|
APN |
9 |
31,248,646 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02295:Prdm10
|
APN |
9 |
31,273,664 (GRCm39) |
missense |
probably benign |
|
|
IGL02390:Prdm10
|
APN |
9 |
31,264,685 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
IGL02574:Prdm10
|
APN |
9 |
31,268,589 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02636:Prdm10
|
APN |
9 |
31,240,977 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
IGL02883:Prdm10
|
APN |
9 |
31,238,644 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03057:Prdm10
|
APN |
9 |
31,260,481 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4142001:Prdm10
|
UTSW |
9 |
31,237,063 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0149:Prdm10
|
UTSW |
9 |
31,227,455 (GRCm39) |
splice site |
probably benign |
|
|
R0306:Prdm10
|
UTSW |
9 |
31,227,520 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0386:Prdm10
|
UTSW |
9 |
31,227,596 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0390:Prdm10
|
UTSW |
9 |
31,260,564 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1512:Prdm10
|
UTSW |
9 |
31,248,697 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1528:Prdm10
|
UTSW |
9 |
31,268,582 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2409:Prdm10
|
UTSW |
9 |
31,260,418 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R3745:Prdm10
|
UTSW |
9 |
31,251,703 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R3929:Prdm10
|
UTSW |
9 |
31,258,432 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4295:Prdm10
|
UTSW |
9 |
31,227,590 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R4629:Prdm10
|
UTSW |
9 |
31,248,612 (GRCm39) |
nonsense |
probably null |
|
|
R4660:Prdm10
|
UTSW |
9 |
31,238,624 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4758:Prdm10
|
UTSW |
9 |
31,273,708 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4793:Prdm10
|
UTSW |
9 |
31,264,701 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4798:Prdm10
|
UTSW |
9 |
31,252,569 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4806:Prdm10
|
UTSW |
9 |
31,241,237 (GRCm39) |
makesense |
probably null |
|
|
R4865:Prdm10
|
UTSW |
9 |
31,258,376 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5068:Prdm10
|
UTSW |
9 |
31,270,343 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R5093:Prdm10
|
UTSW |
9 |
31,252,779 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5162:Prdm10
|
UTSW |
9 |
31,251,714 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R5656:Prdm10
|
UTSW |
9 |
31,264,713 (GRCm39) |
missense |
probably benign |
0.08 |
|
R5855:Prdm10
|
UTSW |
9 |
31,248,619 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6242:Prdm10
|
UTSW |
9 |
31,252,548 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R6396:Prdm10
|
UTSW |
9 |
31,229,842 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R6970:Prdm10
|
UTSW |
9 |
31,241,119 (GRCm39) |
nonsense |
probably null |
|
|
R7165:Prdm10
|
UTSW |
9 |
31,227,738 (GRCm39) |
splice site |
probably null |
|
|
R7177:Prdm10
|
UTSW |
9 |
31,279,003 (GRCm39) |
missense |
probably benign |
|
|
R7201:Prdm10
|
UTSW |
9 |
31,227,602 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R7313:Prdm10
|
UTSW |
9 |
31,268,456 (GRCm39) |
nonsense |
probably null |
|
|
R7337:Prdm10
|
UTSW |
9 |
31,227,537 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7511:Prdm10
|
UTSW |
9 |
31,289,777 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7711:Prdm10
|
UTSW |
9 |
31,268,528 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7855:Prdm10
|
UTSW |
9 |
31,238,770 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7965:Prdm10
|
UTSW |
9 |
31,258,302 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7997:Prdm10
|
UTSW |
9 |
31,264,721 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8168:Prdm10
|
UTSW |
9 |
31,258,263 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8717:Prdm10
|
UTSW |
9 |
31,252,695 (GRCm39) |
missense |
probably benign |
0.31 |
|
R8865:Prdm10
|
UTSW |
9 |
31,238,693 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8880:Prdm10
|
UTSW |
9 |
31,264,742 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9022:Prdm10
|
UTSW |
9 |
31,268,424 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9200:Prdm10
|
UTSW |
9 |
31,268,438 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9288:Prdm10
|
UTSW |
9 |
31,252,674 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R9607:Prdm10
|
UTSW |
9 |
31,260,486 (GRCm39) |
missense |
probably damaging |
1.00 |
|
RF004:Prdm10
|
UTSW |
9 |
31,270,422 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0064:Prdm10
|
UTSW |
9 |
31,273,747 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Prdm10
|
UTSW |
9 |
31,227,589 (GRCm39) |
nonsense |
probably null |
|
|
Z1176:Prdm10
|
UTSW |
9 |
31,227,464 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGCTCTAGCTCAGCATGGATGAAG -3'
(R):5'- GGTAACAAATTGCCAGCCACCTCAG -3'
Sequencing Primer
(F):5'- CATGGATGAAGGCTTCTTTTCC -3'
(R):5'- GGGGTTCTAACTCATTTCTGCAC -3'
|
| Posted On |
2013-04-11 |
Incidental Mutation